3cyn - Revision history

OCA at 12:35, 30 August 2023

OCA — Wed, 30 Aug 2023 12:35:24 GMT

←Older revision		Revision as of 12:35, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3cyn' size='340' side='right'caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3cyn' size='340' side='right'caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>LOC493869 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~9606 HUMAN])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [https://pdbe.org/3cyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [https://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [https://pdbe.org/3cyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [https://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/GPX8_HUMAN GPX8_HUMAN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Glutathione peroxidase]]~~	+	[[Category: Homo sapiens]]
-	~~[[Category: Human~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arrowsmith~~, C H~~]]	+	[[Category: Arrowsmith CH]]
-	[[Category: Bountra, C]]	+	[[Category: Bountra C]]
-	~~[[Category: Delft, F von~~]]	+	[[Category: Edwards AM]]
-	[[Category: Edwards~~, A M~~]]	+	[[Category: Filippakopoulos P]]
-	[[Category: Filippakopoulos, P]]	+	[[Category: Johansson C]]
-	[[Category: Johansson, C]]	+	[[Category: Kavanagh KL]]
-	[[Category: Kavanagh~~, K L~~]]	+	[[Category: Kochan G]]
-	[[Category: Kochan, G]]	+	[[Category: Murray J]]
-	[[Category: Murray, J]]	+	[[Category: Oppermann U]]
-	[[Category: Oppermann, U]]	+	[[Category: Pike ACW]]
-	[[Category: Pike~~, A C.W~~]]	+	[[Category: Roos AK]]
-	[[Category: Roos~~, A K]]~~	+	[[Category: Wikstrom M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Yue WW]]
-	[[Category: Wikstrom, M]]	+	[[Category: Von Delft F]]
-	[[Category: Yue~~, W W~~]]	+
-	[[Category: ~~Membrane]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Sgc]]~~	+
-	~~[[Category: Thioredoxin fold]]~~	+
-	~~[[Category: Transmembrane~~]]	+

OCA at 07:48, 2 February 2022

OCA — Wed, 02 Feb 2022 07:48:13 GMT

←Older revision		Revision as of 07:48, 2 February 2022
Line 1:		Line 1:

	==The structure of human GPX8==		==The structure of human GPX8==
-	<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3cyn' size='340' side='right'caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3CYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [~~http~~://pdbe.org/3cyn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [https://pdbe.org/3cyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [https://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Glutathione peroxidase\|Glutathione peroxidase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Glutathione peroxidase]]		[[Category: Glutathione peroxidase]]
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]
	[[Category: Bountra, C]]		[[Category: Bountra, C]]

OCA at 06:41, 31 January 2018

OCA — Wed, 31 Jan 2018 06:41:30 GMT

←Older revision		Revision as of 06:41, 31 January 2018
Line 3:		Line 3:
	<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://pdbe.org/3cyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://pdbe.org/3cyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cyn_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cyn_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Glutathione peroxidase]]		[[Category: Glutathione peroxidase]]
		+	[[Category: Human]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]
	[[Category: Bountra, C]]		[[Category: Bountra, C]]
-	[[Category: Delft, F ~~Von~~]]	+	[[Category: Delft, F von]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]
	[[Category: Filippakopoulos, P]]		[[Category: Filippakopoulos, P]]

OCA at 08:38, 25 October 2017

OCA — Wed, 25 Oct 2017 08:38:59 GMT

←Older revision		Revision as of 08:38, 25 October 2017
Line 3:		Line 3:
	<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://pdbe.org/3cyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://pdbe.org/3cyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
Line 19:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Glutathione peroxidase\|Glutathione peroxidase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Glutathione peroxidase]]		[[Category: Glutathione peroxidase]]
-	[[Category: Homo sapiens]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]
	[[Category: Bountra, C]]		[[Category: Bountra, C]]

OCA at 17:19, 11 August 2016

OCA — Thu, 11 Aug 2016 17:19:37 GMT

←Older revision		Revision as of 17:19, 11 August 2016
Line 1:		Line 1:
		+
	==The structure of human GPX8==		==The structure of human GPX8==
	<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://pdbe.org/3cyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 11:36, 20 January 2015

OCA — Tue, 20 Jan 2015 11:36:59 GMT

←Older revision		Revision as of 11:36, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>		<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	[[Category: Glutathione peroxidase]]		[[Category: Glutathione peroxidase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Arrowsmith, C H.]]	+	[[Category: Arrowsmith, C H]]
-	[[Category: Bountra, C.]]	+	[[Category: Bountra, C]]
-	[[Category: Delft, F Von.]]	+	[[Category: Delft, F Von]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Filippakopoulos, P.]]	+	[[Category: Filippakopoulos, P]]
-	[[Category: Johansson, C.]]	+	[[Category: Johansson, C]]
-	[[Category: Kavanagh, K L.]]	+	[[Category: Kavanagh, K L]]
-	[[Category: Kochan, G.]]	+	[[Category: Kochan, G]]
-	[[Category: Murray, J.]]	+	[[Category: Murray, J]]
-	[[Category: Oppermann, U.]]	+	[[Category: Oppermann, U]]
-	[[Category: Pike, A C.W.]]	+	[[Category: Pike, A C.W]]
-	[[Category: Roos, A K.]]	+	[[Category: Roos, A K]]
-	[[Category: ~~SGC,~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Wikstrom, M.]]	+	[[Category: Wikstrom, M]]
-	[[Category: Yue, W W~~.]]~~	+	[[Category: Yue, W W]]
-	~~[[Category: Glutathione peroxidase~~]]	+
	[[Category: Membrane]]		[[Category: Membrane]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Sgc]]		[[Category: Sgc]]
-	[[Category: Structural genomic]]
-	[[Category: Structural genomics consortium]]
	[[Category: Thioredoxin fold]]		[[Category: Thioredoxin fold]]
	[[Category: Transmembrane]]		[[Category: Transmembrane]]

OCA at 10:11, 29 September 2014

OCA — Mon, 29 Sep 2014 10:11:27 GMT

←Older revision		Revision as of 10:11, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3cyn.png\|left\|200px]]~~	+	==The structure of human GPX8==
-		+	<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_3cyn\| PDB=3cyn \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
-	===The structure of human GPX8===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum]</span></td></tr>
-	[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cyn_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Glutathione peroxidase\|Glutathione peroxidase]]		*[[Glutathione peroxidase\|Glutathione peroxidase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Glutathione peroxidase]]		[[Category: Glutathione peroxidase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]

OCA at 21:24, 20 October 2012

OCA — Sat, 20 Oct 2012 21:24:23 GMT

←Older revision		Revision as of 21:24, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3cyn]] is a 3 chain structure ~~of [[Glutathione peroxidase]]~~ with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA].	+	[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA].

	==See Also==		==See Also==

OCA: Protected "3cyn" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 13:09:19 GMT

Protected "3cyn" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:09, 27 July 2012

OCA at 13:09, 27 July 2012

OCA — Fri, 27 Jul 2012 13:09:18 GMT

←Older revision		Revision as of 13:09, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3cyn.png\|left\|200px]]		[[Image:3cyn.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3cyn", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3cyn\| PDB=3cyn \| SCENE= }}		{{STRUCTURE_3cyn\| PDB=3cyn \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3CYN~~ is a 3 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA].	+	[[3cyn]] is a 3 chain structure of [[Glutathione peroxidase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA].
		+
		+	==See Also==
		+	*[[Glutathione peroxidase\|Glutathione peroxidase]]
	[[Category: Glutathione peroxidase]]		[[Category: Glutathione peroxidase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
Line 40:		Line 36:
	[[Category: Thioredoxin fold]]		[[Category: Thioredoxin fold]]
	[[Category: Transmembrane]]		[[Category: Transmembrane]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:39:47 2009''