3d4r - Revision history

OCA at 04:34, 30 September 2022

OCA — Fri, 30 Sep 2022 04:34:28 GMT

←Older revision		Revision as of 04:34, 30 September 2022
Line 3:		Line 3:
	<StructureSection load='3d4r' size='340' side='right'caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3d4r' size='340' side='right'caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D4R FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=~~PEG~~:~~DI(HYDROXYETHYL)ETHER~~'>~~PEG~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [https://pdbe.org/3d4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [https://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [https://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [https://pdbe.org/3d4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [https://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [https://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6M171_METMP Q6M171_METMP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Methanococcus maripaludis]]
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:53, 2 February 2022

OCA — Wed, 02 Feb 2022 07:53:39 GMT

←Older revision		Revision as of 07:53, 2 February 2022
Line 3:		Line 3:
	<StructureSection load='3d4r' size='340' side='right'caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3d4r' size='340' side='right'caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3D4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D4R FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [~~http~~://pdbe.org/3d4r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [https://pdbe.org/3d4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [https://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [https://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:56, 24 July 2019

OCA — Wed, 24 Jul 2019 07:56:00 GMT

←Older revision		Revision as of 07:56, 24 July 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION==		==CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION==
-	<StructureSection load='3d4r' size='340' side='right' caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='3d4r' size='340' side='right'caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Atcc_43000~~ Atcc ~~43000~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D4R FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC ~~43000~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://pdbe.org/3d4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://pdbe.org/3d4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>
	</table>		</table>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/3d4r_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/3d4r_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 43000~~]]	+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 08:42, 25 October 2017

OCA — Wed, 25 Oct 2017 08:42:21 GMT

←Older revision		Revision as of 08:42, 25 October 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION==		==CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION==
	<StructureSection load='3d4r' size='340' side='right' caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3d4r' size='340' side='right' caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 43000])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 43000])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://pdbe.org/3d4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://pdbe.org/3d4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d4r ProSAT], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 14:06, 7 February 2016

OCA — Sun, 07 Feb 2016 14:06:00 GMT

←Older revision		Revision as of 14:06, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3d4r' size='340' side='right' caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='3d4r' size='340' side='right' caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanococcus_maripaludis Methanococcus maripaludis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43000 Atcc 43000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D4R FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ~~Methanococcus maripaludis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 43000])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://pdbe.org/3d4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d4r ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanococcus maripaludis~~]]	+	[[Category: Atcc 43000]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 08:22, 12 November 2014

OCA — Wed, 12 Nov 2014 08:22:10 GMT

←Older revision		Revision as of 08:22, 12 November 2014
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-	~~[[Image:3d4r.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION==
-		+	<StructureSection load='3d4r' size='340' side='right' caption='[[3d4r]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_3d4r\| PDB=3d4r \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D4R FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_987166.1, MMP0046 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 Methanococcus maripaludis])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d4r RCSB], [http://www.ebi.ac.uk/pdbsum/3d4r PDBsum], [http://www.topsan.org/Proteins/JCSG/3d4r TOPSAN]</span></td></tr>
-	[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d4/3d4r_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
-	[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Jcsg]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "3d4r" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:49:55 GMT

Protected "3d4r" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:49, 7 January 2013

OCA at 21:49, 7 January 2013

OCA — Mon, 07 Jan 2013 21:49:53 GMT

←Older revision		Revision as of 21:49, 7 January 2013
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-	{{Seed}}
	[[Image:3d4r.png\|left\|200px]]		[[Image:3d4r.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3d4r", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3d4r\| PDB=3d4r \| SCENE= }}		{{STRUCTURE_3d4r\| PDB=3d4r \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3D4R~~ is a 6 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].	+	[[3d4r]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:16:29 2010''

OCA at 08:09, 28 July 2010

OCA — Wed, 28 Jul 2010 08:09:46 GMT

←Older revision		Revision as of 08:09, 28 July 2010
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	{{STRUCTURE_3d4r\| PDB=3d4r \| SCENE= }}		{{STRUCTURE_3d4r\| PDB=3d4r \| SCENE= }}

-	===~~Crystal structure of Domain of Unknown Function from the Pfam-B_34464 Family~~ (~~NP_987166.1) from Methanococcus maripaludis JJ (DSM 2067~~) at 2.20 A ~~resolution~~===	+	===CRYSTAL STRUCTURE OF a DUF2118 family protein (MMP0046) FROM METHANOCOCCUS MARIPALUDIS AT 2.20 A RESOLUTION===


	==About this Structure==		==About this Structure==
-	3D4R is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].	+	3D4R is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Domain of unknown function from the pfam-b_34464 family]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Joint center for structural genomic]]		[[Category: Joint center for structural genomic]]
-	[[Category: Np_987166 1]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi-2]]		[[Category: Psi-2]]
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	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Feb 16 14~~:19:~~01 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 12:16:29 2010''

OCA at 12:19, 16 February 2009

OCA — Mon, 16 Feb 2009 12:19:02 GMT

←Older revision		Revision as of 12:19, 16 February 2009
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	{{Seed}}		{{Seed}}
-	[[Image:3d4r.~~jpg~~\|left\|200px]]	+	[[Image:3d4r.png\|left\|200px]]

	<!--		<!--
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	==About this Structure==		==About this Structure==
-	3D4R is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].	+	3D4R is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D4R OCA].
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Domain of unknown function from the pfam-b_34464 family]]		[[Category: Domain of unknown function from the pfam-b_34464 family]]
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	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 9 10~~:47:~~05 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 14:19:01 2009''