3das - Revision history

OCA at 06:57, 19 August 2020

OCA — Wed, 19 Aug 2020 06:57:27 GMT

←Older revision		Revision as of 06:57, 19 August 2020
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	==Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor==		==Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor==
-	<StructureSection load='3das' size='340' side='right' caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='3das' size='340' side='right'caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DAS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3DAS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://pdbe.org/3das PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3das ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://pdbe.org/3das PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3das ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Doel, J J]]		[[Category: Doel, J J]]
	[[Category: Oubrie, A]]		[[Category: Oubrie, A]]

OCA at 09:32, 14 November 2018

OCA — Wed, 14 Nov 2018 09:32:16 GMT

←Older revision		Revision as of 09:32, 14 November 2018
Line 1:		Line 1:
		+
	==Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor==		==Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor==
	<StructureSection load='3das' size='340' side='right' caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3das' size='340' side='right' caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://pdbe.org/3das PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://pdbe.org/3das PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3das ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/3das_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/3das_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:12, 8 February 2016

OCA — Mon, 08 Feb 2016 04:12:49 GMT

←Older revision		Revision as of 04:12, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3das' size='340' side='right' caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3das' size='340' side='right' caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_coelicolor Streptomyces~~ coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DAS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DAS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://pdbe.org/3das PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3das ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptomyces coelicolor]]
	[[Category: Doel, J J]]		[[Category: Doel, J J]]
	[[Category: Oubrie, A]]		[[Category: Oubrie, A]]

OCA at 08:16, 12 November 2014

OCA — Wed, 12 Nov 2014 08:16:39 GMT

←Older revision		Revision as of 08:16, 12 November 2014
Line 1:		Line 1:
-	~~[[Image:3das.png\|left\|200px]]~~	+	==Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor==
-		+	<StructureSection load='3das' size='340' side='right' caption='[[3das]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_3das\| PDB=3das \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DAS FirstGlance]. <br>
-	===Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARA:ALPHA-L-ARABINOSE'>ARA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3das OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3das RCSB], [http://www.ebi.ac.uk/pdbsum/3das PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	</table>
-	[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/3das_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptomyces coelicolor]]		[[Category: Streptomyces coelicolor]]
-	[[Category: Doel, J J.]]	+	[[Category: Doel, J J]]
-	[[Category: Oubrie, A.]]	+	[[Category: Oubrie, A]]
-	[[Category: Richardson, D J.]]	+	[[Category: Richardson, D J]]
-	[[Category: Southall, S M.]]	+	[[Category: Southall, S M]]
	[[Category: Aldose sugar dehydrogenase]]		[[Category: Aldose sugar dehydrogenase]]
	[[Category: Beta propellor]]		[[Category: Beta propellor]]

OCA: Protected "3das" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 21:26:04 GMT

Protected "3das" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:26, 7 January 2013

OCA at 21:26, 7 January 2013

OCA — Mon, 07 Jan 2013 21:26:00 GMT

←Older revision		Revision as of 21:26, 7 January 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3das.png\|left\|200px]]
-	[[Image:3das.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3das", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3das\| PDB=3das \| SCENE= }}		{{STRUCTURE_3das\| PDB=3das \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3DAS~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA].	+	[[3das]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA].
	[[Category: Streptomyces coelicolor]]		[[Category: Streptomyces coelicolor]]
	[[Category: Doel, J J.]]		[[Category: Doel, J J.]]
Line 25:		Line 18:
	[[Category: Pqq]]		[[Category: Pqq]]
	[[Category: Sgdh]]		[[Category: Sgdh]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 4 07:33:43 2009''

OCA at 04:33, 4 June 2009

OCA — Thu, 04 Jun 2009 04:33:46 GMT

←Older revision		Revision as of 04:33, 4 June 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3das.jpg\|left\|200px]]

-	The ~~entry 3das~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3das", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3das\| PDB=3das \| SCENE= }}

-	~~Authors: Southall, S.M., Doel, J.J., Oubrie, A., Richardson, D.J.~~	+	===Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor===

-	Description: Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Fri Jul 11 13~~:05:~~56 2008~~''	+	==About this Structure==
		+	3DAS is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAS OCA].
		+	[[Category: Streptomyces coelicolor]]
		+	[[Category: Doel, J J.]]
		+	[[Category: Oubrie, A.]]
		+	[[Category: Richardson, D J.]]
		+	[[Category: Southall, S M.]]
		+	[[Category: Aldose sugar dehydrogenase]]
		+	[[Category: Beta propellor]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Pqq]]
		+	[[Category: Sgdh]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 4 07:33:43 2009''

OCA: New page: '''Unreleased structure''' The entry 3das is ON HOLD until Paper Publication Authors: Southall, S.M., Doel, J.J., Oubrie, A., Richardson, D.J. Description: Structure of the PQQ-bound f...

OCA — Fri, 11 Jul 2008 10:05:56 GMT

New page: '''Unreleased structure''' The entry 3das is ON HOLD until Paper Publication Authors: Southall, S.M., Doel, J.J., Oubrie, A., Richardson, D.J. Description: Structure of the PQQ-bound f...

New page

'''Unreleased structure'''

The entry 3das is ON HOLD until Paper Publication

Authors: Southall, S.M., Doel, J.J., Oubrie, A., Richardson, D.J.

Description: Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Jul 11 13:05:56 2008''