3djc - Revision history

OCA at 09:41, 21 February 2024

OCA — Wed, 21 Feb 2024 09:41:40 GMT

←Older revision		Revision as of 09:41, 21 February 2024
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==		==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==
-	<StructureSection load='3djc' size='340' side='right'caption='[[3djc]]' scene=''>	+	<StructureSection load='3djc' size='340' side='right'caption='[[3djc]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DJC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3djc]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DJC FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [https://pdbe.org/3djc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [https://www.ebi.ac.uk/pdbsum/3djc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3djc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [https://pdbe.org/3djc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [https://www.ebi.ac.uk/pdbsum/3djc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3djc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/COAX_LEGPH COAX_LEGPH] Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
	[[Category: Almo SC]]		[[Category: Almo SC]]
	[[Category: Bonanno JB]]		[[Category: Bonanno JB]]

OCA at 07:59, 9 February 2022

OCA — Wed, 09 Feb 2022 07:59:52 GMT

←Older revision		Revision as of 07:59, 9 February 2022
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==		==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==
-	<StructureSection load='3djc' size='340' side='right' caption='[[3djc]]~~, [[Resolution\|resolution]] 2.40Å~~' scene=''>	+	<StructureSection load='3djc' size='340' side='right'caption='[[3djc]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Legph Legph].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DJC FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DJC FirstGlance]. <br>
-	</td></tr>~~<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [https://pdbe.org/3djc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [https://www.ebi.ac.uk/pdbsum/3djc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3djc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaX, lpg0911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [~~http~~://pdbe.org/3djc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3djc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3djc ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>	+
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/COAX_LEGPH COAX_LEGPH]] Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 18:

	==See Also==		==See Also==
-	*[[Pantothenate kinase\|Pantothenate kinase]]	+	*[[Pantothenate kinase 3D structures\|Pantothenate kinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Legph]]~~	+	[[Category: Large Structures]]
-	~~[[Category: Pantothenate kinase~~]]	+	[[Category: Almo SC]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Bonanno JB]]
-	[[Category: Bonanno~~, J B~~]]	+	[[Category: Burley SK]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Dickey M]]
-	[[Category: Dickey, M]]	+	[[Category: Koss J]]
-	[[Category: Koss, J]]	+	[[Category: Logan C]]
-	[[Category: Logan, C]]	+	[[Category: Maletic M]]
-	[[Category: Maletic, M]]	+	[[Category: Patskovsky Y]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Romero R]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Sauder JM]]
-	[[Category: Romero, R]]	+	[[Category: Wasserman S]]
-	[[Category: Sauder~~, J M~~]]	+
-	[[Category: Wasserman, S]]	+
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Coenzyme a biosynthesis]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Putative transferase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 08:40, 14 November 2018

OCA — Wed, 14 Nov 2018 08:40:34 GMT

←Older revision		Revision as of 08:40, 14 November 2018
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/3djc_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/3djc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 10:39, 5 August 2016

OCA — Fri, 05 Aug 2016 10:39:21 GMT

←Older revision		Revision as of 10:39, 5 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==		==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==
	<StructureSection load='3djc' size='340' side='right' caption='[[3djc]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='3djc' size='340' side='right' caption='[[3djc]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DJC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Legph Legph]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DJC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaX, lpg0911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 ~~Legionella pneumophila subsp. pneumophila str. Philadelphia 1~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaX, lpg0911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://pdbe.org/3djc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3djc ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3djc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Legionella pneumophila subsp. pneumophila str. philadelphia 1~~]]	+	[[Category: Legph]]
	[[Category: Pantothenate kinase]]		[[Category: Pantothenate kinase]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 18:06, 25 December 2014

OCA — Thu, 25 Dec 2014 18:06:04 GMT

←Older revision		Revision as of 18:06, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COAX_LEGPH COAX_LEGPH]] Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:24, 6 November 2014

OCA — Thu, 06 Nov 2014 12:24:21 GMT

←Older revision		Revision as of 12:24, 6 November 2014
Line 25:		Line 25:
	[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]		[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
	[[Category: Pantothenate kinase]]		[[Category: Pantothenate kinase]]
		+	[[Category: Almo, S C]]
		+	[[Category: Bonanno, J B]]
		+	[[Category: Burley, S K]]
		+	[[Category: Dickey, M]]
		+	[[Category: Koss, J]]
	[[Category: Logan, C]]		[[Category: Logan, C]]
	[[Category: Maletic, M]]		[[Category: Maletic, M]]
		+	[[Category: Structural genomic]]
		+	[[Category: Patskovsky, Y]]
		+	[[Category: Romero, R]]
		+	[[Category: Sauder, J M]]
		+	[[Category: Wasserman, S]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
	[[Category: Coenzyme a biosynthesis]]		[[Category: Coenzyme a biosynthesis]]
		+	[[Category: Kinase]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
	[[Category: Nucleotide-binding]]		[[Category: Nucleotide-binding]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Putative transferase]]		[[Category: Putative transferase]]
		+	[[Category: Transferase]]

OCA at 11:21, 6 November 2014

OCA — Thu, 06 Nov 2014 11:21:38 GMT

←Older revision		Revision as of 11:21, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DJC FirstGlance]. <br>		<table><tr><td colspan='2'>[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DJC FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaX, lpg0911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaX, lpg0911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]		[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
	[[Category: Pantothenate kinase]]		[[Category: Pantothenate kinase]]
-	~~[[Category: Almo, S C.]]~~	+	[[Category: Logan, C]]
-	~~[[Category: Bonanno, J B.]]~~	+	[[Category: Maletic, M]]
-	~~[[Category: Burley, S K.]]~~	+
-	~~[[Category: Dickey, M.]]~~	+
-	~~[[Category: Koss, J.]]~~	+
-	[[Category: Logan, C.]]	+
-	[[Category: Maletic, M~~.]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Patskovsky, Y.]]~~	+
-	~~[[Category: Romero, R.]]~~	+
-	~~[[Category: Sauder, J M.]]~~	+
-	~~[[Category: Wasserman, S.~~]]	+
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
	[[Category: Coenzyme a biosynthesis]]		[[Category: Coenzyme a biosynthesis]]
-	[[Category: Kinase]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
-	[[Category: New york sgx research center for structural genomic]]
-	[[Category: New york structural genomix research consortium]]
	[[Category: Nucleotide-binding]]		[[Category: Nucleotide-binding]]
-	[[Category: Nysgxrc]]
-	[[Category: Pantothenate kinase]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
	[[Category: Putative transferase]]		[[Category: Putative transferase]]
-	[[Category: Structural genomic]]
-	[[Category: Transferase]]

OCA at 12:11, 29 September 2014

OCA — Mon, 29 Sep 2014 12:11:51 GMT

←Older revision		Revision as of 12:11, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3djc.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA==
		+	<StructureSection load='3djc' size='340' side='right' caption='[[3djc]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DJC FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaX, lpg0911 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantothenate_kinase Pantothenate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.33 2.7.1.33] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3djc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3djc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3djc RCSB], [http://www.ebi.ac.uk/pdbsum/3djc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3djc TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dj/3djc_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

-	~~{{STRUCTURE_3djc\| PDB~~=~~3djc \| SCENE= }}~~	+	==See Also==
-		+	*[[Pantothenate kinase\|Pantothenate kinase]]
-	~~===CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA~~===	+	__TOC__
-		+	</StructureSection>
-		+
-	~~==About this Structure==~~	+
-	[[~~3djc~~]] ~~is a 12 chain structure with sequence from [http:~~//en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA].	+
	[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]		[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
	[[Category: Pantothenate kinase]]		[[Category: Pantothenate kinase]]

OCA: Protected "3djc" [edit=sysop:move=sysop]

OCA — Wed, 24 Oct 2012 06:29:56 GMT

Protected "3djc" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:29, 24 October 2012

OCA at 06:29, 24 October 2012

OCA — Wed, 24 Oct 2012 06:29:53 GMT

←Older revision		Revision as of 06:29, 24 October 2012
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-	{{Seed}}
	[[Image:3djc.png\|left\|200px]]		[[Image:3djc.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3djc", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_3djc\| PDB=3djc \| SCENE= }}		{{STRUCTURE_3djc\| PDB=3djc \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3DJC~~ is a 12 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA].	+	[[3djc]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DJC OCA].
	[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]		[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
	[[Category: Pantothenate kinase]]		[[Category: Pantothenate kinase]]
Line 27:		Line 20:
	[[Category: Patskovsky, Y.]]		[[Category: Patskovsky, Y.]]
	[[Category: Romero, R.]]		[[Category: Romero, R.]]
-	[[Category: Sauder, M J.]]	+	[[Category: Sauder, J M.]]
	[[Category: Wasserman, S.]]		[[Category: Wasserman, S.]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
	[[Category: Coenzyme a biosynthesis]]		[[Category: Coenzyme a biosynthesis]]
-	[[Category: Cytoplasm]]
	[[Category: Kinase]]		[[Category: Kinase]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
Line 44:		Line 36:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:56:04 2008''