3dlc - Revision history

OCA at 04:34, 30 September 2022

OCA — Fri, 30 Sep 2022 04:34:31 GMT

←Older revision		Revision as of 04:34, 30 September 2022
Line 3:		Line 3:
	<StructureSection load='3dlc' size='340' side='right'caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='3dlc' size='340' side='right'caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DLC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DLC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=~~SAM~~:~~S-ADENOSYLMETHIONINE~~'>~~SAM~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [https://pdbe.org/3dlc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [https://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [https://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [https://pdbe.org/3dlc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [https://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [https://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6LY14_METMP Q6LY14_METMP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Methanococcus maripaludis]]
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 08:01, 9 February 2022

OCA — Wed, 09 Feb 2022 08:01:42 GMT

←Older revision		Revision as of 08:01, 9 February 2022
Line 3:		Line 3:
	<StructureSection load='3dlc' size='340' side='right'caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='3dlc' size='340' side='right'caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DLC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DLC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [~~http~~://pdbe.org/3dlc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [https://pdbe.org/3dlc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [https://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [https://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:58, 24 July 2019

OCA — Wed, 24 Jul 2019 07:58:10 GMT

←Older revision		Revision as of 07:58, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution==		==Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution==
-	<StructureSection load='3dlc' size='340' side='right' caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>	+	<StructureSection load='3dlc' size='340' side='right'caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Atcc_43000~~ Atcc ~~43000~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DLC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35294_[[methanococcus_deltae_corder_et_al._1988]] Atcc 35294 [[methanococcus deltae corder et al. 1988]]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DLC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC ~~43000~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 35294 [[Methanococcus deltae Corder et al. 1988]]])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://pdbe.org/3dlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://pdbe.org/3dlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>
	</table>		</table>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dlc_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dlc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 43000~~]]	+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 08:52, 25 October 2017

OCA — Wed, 25 Oct 2017 08:52:35 GMT

←Older revision		Revision as of 08:52, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution==		==Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution==
	<StructureSection load='3dlc' size='340' side='right' caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='3dlc' size='340' side='right' caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 43000])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 43000])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://pdbe.org/3dlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://pdbe.org/3dlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dlc ProSAT], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:36, 8 February 2016

OCA — Mon, 08 Feb 2016 06:36:04 GMT

←Older revision		Revision as of 06:36, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3dlc' size='340' side='right' caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='3dlc' size='340' side='right' caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanococcus_maripaludis Methanococcus maripaludis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DLC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43000 Atcc 43000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DLC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ~~Methanococcus maripaludis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 ATCC 43000])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://pdbe.org/3dlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dlc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanococcus maripaludis~~]]	+	[[Category: Atcc 43000]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 08:09, 12 November 2014

OCA — Wed, 12 Nov 2014 08:09:06 GMT

←Older revision		Revision as of 08:09, 12 November 2014
Line 1:		Line 1:
-	~~[[Image:3dlc.png\|left\|200px]]~~	+	==Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution==
-		+	<StructureSection load='3dlc' size='340' side='right' caption='[[3dlc]], [[Resolution\|resolution]] 1.15Å' scene=''>
-	~~{{STRUCTURE_3dlc\| PDB=3dlc \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DLC FirstGlance]. <br>
-	===Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_988299.1, MMP1179 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39152 Methanococcus maripaludis])</td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dlc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dlc RCSB], [http://www.ebi.ac.uk/pdbsum/3dlc PDBsum], [http://www.topsan.org/Proteins/JCSG/3dlc TOPSAN]</span></td></tr>
-	[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dlc_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
-	[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Jcsg]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 13:33, 6 February 2013

OCA — Wed, 06 Feb 2013 13:33:30 GMT

←Older revision		Revision as of 13:33, 6 February 2013
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	[[Image:3dlc.png\|left\|200px]]		[[Image:3dlc.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3dlc", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3dlc\| PDB=3dlc \| SCENE= }}		{{STRUCTURE_3dlc\| PDB=3dlc \| SCENE= }}

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	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transferase]]

OCA: Protected "3dlc" [edit=sysop:move=sysop]

OCA — Wed, 23 Mar 2011 06:11:13 GMT

Protected "3dlc" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:11, 23 March 2011

OCA at 06:11, 23 March 2011

OCA — Wed, 23 Mar 2011 06:11:11 GMT

←Older revision		Revision as of 06:11, 23 March 2011
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-	{{Seed}}
	[[Image:3dlc.png\|left\|200px]]		[[Image:3dlc.png\|left\|200px]]

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	{{STRUCTURE_3dlc\| PDB=3dlc \| SCENE= }}		{{STRUCTURE_3dlc\| PDB=3dlc \| SCENE= }}

-	===Crystal structure of a ~~Putative S~~-adenosyl-L-methionine-dependent ~~Methyltransferase~~ (~~NP_988299.1~~) from ~~Methanococcus~~ maripaludis ~~JJ (DSM 2067)~~ at 1.15 A resolution===	+	===Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution===


	==About this Structure==		==About this Structure==
-	~~3DLC~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA].	+	[[3dlc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA].
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: A putative s-adenosyl-l-methionine-dependent methyltransferase]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Methyltransferase]]
-	[[Category: Methyltransferase domain]]
-	[[Category: Np_988299 1]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
-	[[Category: Structural genomic]]
-	[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:42:44 2008''

OCA at 15:42, 16 November 2008

OCA — Sun, 16 Nov 2008 15:42:47 GMT

←Older revision		Revision as of 15:42, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3DLC is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA].	+	3DLC is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLC OCA].
	[[Category: Methanococcus maripaludis]]		[[Category: Methanococcus maripaludis]]
-	[[Category: Single protein]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: A putative s-adenosyl-l-methionine-dependent methyltransferase]]		[[Category: A putative s-adenosyl-l-methionine-dependent methyltransferase]]
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	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 05~~:40:22 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:42:44 2008''