3dyb - Revision history

OCA at 12:54, 30 August 2023

OCA — Wed, 30 Aug 2023 12:54:57 GMT

←Older revision		Revision as of 12:54, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='3dyb' size='340' side='right'caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>		<StructureSection load='3dyb' size='340' side='right'caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Engyodontium_album Engyodontium~~ album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DYB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DYB FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-~~1~~-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.32Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https:~~/~~/en.wikipedia.org/wiki/Peptidase_K Peptidase K]~~, ~~with EC number [https~~:/~~/www.brenda-enzymes.info/php/result_flat.php4?ecno~~=3.4~~.21.64 3.4.21.64]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [https://pdbe.org/3dyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [https://www.ebi.ac.uk/pdbsum/3dyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dyb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [https://pdbe.org/3dyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [https://www.ebi.ac.uk/pdbsum/3dyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dyb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~PRTK_TRIAL PRTK_TRIAL]~~] Hydrolyzes keratin at aromatic and hydrophobic residues.	+	[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ] Hydrolyzes keratin at aromatic and hydrophobic residues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Proteinase\|Proteinase]]
	*[[Proteinase 3D structures\|Proteinase 3D structures]]		*[[Proteinase 3D structures\|Proteinase 3D structures]]
	== References ==		== References ==
Line 37:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Engyodontium album]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Peptidase K]]~~	+	[[Category: Parengyodontium album]]
-	~~[[Category: CHTSB, Center for High-Throughput Structural Biology~~]]	+	[[Category: Cudney R]]
-	[[Category: Cudney, R]]	+	[[Category: Day JS]]
-	[[Category: Day~~, J S~~]]	+	[[Category: Larson SB]]
-	[[Category: Larson~~, S B~~]]	+	[[Category: McPherson A]]
-	[[Category: McPherson, A]]	+	[[Category: Nguyen C]]
-	[[Category: Nguyen, C]]	+
-	~~[[Category: Center for high-throughput structural biology]]~~	+
-	~~[[Category: Chtsb]]~~	+
-	~~[[Category: Digalacturonic acid]]~~	+
-	~~[[Category: Hepe]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Protease]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Proteinase k]]~~	+
-	~~[[Category: Serine protease]]~~	+
-	~~[[Category: Silverbullet]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Zymogen~~]]	+

OCA at 13:40, 17 November 2021

OCA — Wed, 17 Nov 2021 13:40:34 GMT

←Older revision		Revision as of 13:40, 17 November 2021
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	<StructureSection load='3dyb' size='340' side='right'caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>		<StructureSection load='3dyb' size='340' side='right'caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3DYB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DYB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=AD0:DIGALACTURONIC+ACID'~~>~~AD0</scene>,~~ <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [~~http~~://pdbe.org/3dyb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3dyb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3dyb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [https://pdbe.org/3dyb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [https://www.ebi.ac.uk/pdbsum/3dyb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dyb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PRTK_TRIAL PRTK_TRIAL]] Hydrolyzes keratin at aromatic and hydrophobic residues.	+	[[https://www.uniprot.org/uniprot/PRTK_TRIAL PRTK_TRIAL]] Hydrolyzes keratin at aromatic and hydrophobic residues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	==See Also==		==See Also==
	*[[Proteinase\|Proteinase]]		*[[Proteinase\|Proteinase]]
		+	*[[Proteinase 3D structures\|Proteinase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 51:		Line 52:
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
-	[[Category: Porteinase k]]
	[[Category: Protease]]		[[Category: Protease]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
		+	[[Category: Proteinase k]]
	[[Category: Serine protease]]		[[Category: Serine protease]]
	[[Category: Silverbullet]]		[[Category: Silverbullet]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Zymogen]]		[[Category: Zymogen]]

OCA at 07:48, 31 July 2019

OCA — Wed, 31 Jul 2019 07:48:05 GMT

←Older revision		Revision as of 07:48, 31 July 2019
Line 1:		Line 1:

	==proteinase K- digalacturonic acid complex==		==proteinase K- digalacturonic acid complex==
-	<StructureSection load='3dyb' size='340' side='right' caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>	+	<StructureSection load='3dyb' size='340' side='right'caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DYB FirstGlance]. <br>		<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DYB FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/3dyb_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/3dyb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Engyodontium album]]		[[Category: Engyodontium album]]
		+	[[Category: Large Structures]]
	[[Category: Peptidase K]]		[[Category: Peptidase K]]
	[[Category: CHTSB, Center for High-Throughput Structural Biology]]		[[Category: CHTSB, Center for High-Throughput Structural Biology]]

OCA at 08:58, 25 October 2017

OCA — Wed, 25 Oct 2017 08:58:33 GMT

←Older revision		Revision as of 08:58, 25 October 2017
Line 1:		Line 1:
		+
	==proteinase K- digalacturonic acid complex==		==proteinase K- digalacturonic acid complex==
	<StructureSection load='3dyb' size='340' side='right' caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>		<StructureSection load='3dyb' size='340' side='right' caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AD0:DIGALACTURONIC+ACID'>AD0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AD0:DIGALACTURONIC+ACID'>AD0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://pdbe.org/3dyb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://pdbe.org/3dyb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dyb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 19:19, 7 February 2016

OCA — Sun, 07 Feb 2016 19:19:51 GMT

←Older revision		Revision as of 19:19, 7 February 2016
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AD0:DIGALACTURONIC+ACID'>AD0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AD0:DIGALACTURONIC+ACID'>AD0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://pdbe.org/3dyb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dyb ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3dyb" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 17:40, 24 December 2014

OCA — Wed, 24 Dec 2014 17:40:55 GMT

←Older revision		Revision as of 17:40, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PRTK_TRIAL PRTK_TRIAL]] Hydrolyzes keratin at aromatic and hydrophobic residues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 13:22, 19 November 2014

OCA — Wed, 19 Nov 2014 13:22:53 GMT

←Older revision		Revision as of 13:22, 19 November 2014
Line 1:		Line 1:
-	[[~~Image~~:3dyb.~~png\|left~~\|200px]]	+	==proteinase K- digalacturonic acid complex==
		+	<StructureSection load='3dyb' size='340' side='right' caption='[[3dyb]], [[Resolution\|resolution]] 1.32Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3dyb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DYB FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AD0:DIGALACTURONIC+ACID'>AD0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dyb RCSB], [http://www.ebi.ac.uk/pdbsum/3dyb PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/3dyb_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Proteinase K, a subtilisin-like fungal protease, was crystallized from a cocktail of small molecules containing digalacturonic acid (DGA). The crystal structure was determined to 1.32 A resolution and refined to an R factor of 0.158. The final model contained, beside the protein, two calcium ions, 379 water molecules, a molecule of DGA and a partially occupied HEPES molecule. The DGA molecule has one sugar moiety disposed exactly on a crystallographic twofold axis; the second ring was not observed. The DGA molecule is bound to two protein molecules across the twofold axis through hydrogen-bonding networks involving Ser150 and water molecules. One of the calcium-ion sites has not been reported previously. This study further illustrates the involvement of small molecules in the crystallization of macromolecules through their ability to form intermolecular lattice interactions.

-	~~{{STRUCTURE_3dyb\| PDB=3dyb \| SCENE= }}~~	+	High-resolution structure of proteinase K cocrystallized with digalacturonic acid.,Larson SB, Day JS, Nguyen C, Cudney R, McPherson A Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt, 3):192-8. Epub 2009 Feb 12. PMID:19255463<ref>PMID:19255463</ref>

-	~~===proteinase K- digalacturonic acid complex===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_19255463}}~~	+	==See Also==
-		+	*[[Proteinase\|Proteinase]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~3dyb~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:019255463<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Engyodontium album]]		[[Category: Engyodontium album]]
	[[Category: Peptidase K]]		[[Category: Peptidase K]]
-	[[Category: CHTSB, Center for High-Throughput Structural Biology.]]	+	[[Category: CHTSB, Center for High-Throughput Structural Biology]]
-	[[Category: Cudney, R.]]	+	[[Category: Cudney, R]]
-	[[Category: Day, J S.]]	+	[[Category: Day, J S]]
-	[[Category: Larson, S B.]]	+	[[Category: Larson, S B]]
-	[[Category: McPherson, A.]]	+	[[Category: McPherson, A]]
-	[[Category: Nguyen, C.]]	+	[[Category: Nguyen, C]]
	[[Category: Center for high-throughput structural biology]]		[[Category: Center for high-throughput structural biology]]
	[[Category: Chtsb]]		[[Category: Chtsb]]
Line 28:		Line 48:
	[[Category: Porteinase k]]		[[Category: Porteinase k]]
	[[Category: Protease]]		[[Category: Protease]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2~~]]	+
	[[Category: Serine protease]]		[[Category: Serine protease]]
	[[Category: Silverbullet]]		[[Category: Silverbullet]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Zymogen]]		[[Category: Zymogen]]

OCA: Protected "3dyb" [edit=sysop:move=sysop]

OCA — Wed, 09 Jan 2013 08:48:41 GMT

Protected "3dyb" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:48, 9 January 2013

OCA at 08:48, 9 January 2013

OCA — Wed, 09 Jan 2013 08:48:39 GMT

←Older revision		Revision as of 08:48, 9 January 2013
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-	{{Seed}}
	[[Image:3dyb.png\|left\|200px]]		[[Image:3dyb.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3dyb", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3dyb\| PDB=3dyb \| SCENE= }}		{{STRUCTURE_3dyb\| PDB=3dyb \| SCENE= }}

	===proteinase K- digalacturonic acid complex===		===proteinase K- digalacturonic acid complex===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19255463}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19255463 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19255463}}		{{ABSTRACT_PUBMED_19255463}}

	==About this Structure==		==About this Structure==
-	~~3DYB~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA].	+	[[3dyb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19255463~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019255463</ref><references group="xtra"/>
	[[Category: Engyodontium album]]		[[Category: Engyodontium album]]
	[[Category: Peptidase K]]		[[Category: Peptidase K]]
Line 32:		Line 20:
	[[Category: McPherson, A.]]		[[Category: McPherson, A.]]
	[[Category: Nguyen, C.]]		[[Category: Nguyen, C.]]
-	[[Category: Calcium]]
	[[Category: Center for high-throughput structural biology]]		[[Category: Center for high-throughput structural biology]]
	[[Category: Chtsb]]		[[Category: Chtsb]]
Line 47:		Line 34:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Zymogen]]		[[Category: Zymogen]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 10:30:07 2009''

OCA at 08:30, 22 March 2009

OCA — Sun, 22 Mar 2009 08:30:09 GMT

←Older revision		Revision as of 08:30, 22 March 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	3DYB is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA].	+	3DYB is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYB OCA].

	==Reference==		==Reference==
-	High-resolution structure of proteinase K cocrystallized with digalacturonic acid., Larson SB, Day JS, Nguyen C, Cudney R, McPherson A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt, 3):192-8. Epub 2009 Feb 12. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/19255463 19255463]~~	+	<ref group="xtra">PMID:19255463</ref><references group="xtra"/>
	[[Category: Engyodontium album]]		[[Category: Engyodontium album]]
	[[Category: Peptidase K]]		[[Category: Peptidase K]]
-	[[Category: ~~Single protein~~]]	+	[[Category: CHTSB, Center for High-Throughput Structural Biology.]]
-	[[Category: ~~Pdbx_ordinal=~~, ~~<PDBx~~:~~audit_author~~.]]	+	[[Category: Cudney, R.]]
		+	[[Category: Day, J S.]]
		+	[[Category: Larson, S B.]]
		+	[[Category: McPherson, A.]]
		+	[[Category: Nguyen, C.]]
	[[Category: Calcium]]		[[Category: Calcium]]
	[[Category: Center for high-throughput structural biology]]		[[Category: Center for high-throughput structural biology]]
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	[[Category: Zymogen]]		[[Category: Zymogen]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed~~ Mar ~~18 20~~:34:16 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 22 10:30:07 2009''