3ere - Revision history

OCA at 06:32, 6 September 2023

OCA — Wed, 06 Sep 2023 06:32:01 GMT

←Older revision		Revision as of 06:32, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3ere' size='340' side='right'caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3ere' size='340' side='right'caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Myctu Myctu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERE FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [https://pdbe.org/3ere PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [https://www.ebi.ac.uk/pdbsum/3ere PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ere ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [https://pdbe.org/3ere PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [https://www.ebi.ac.uk/pdbsum/3ere PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ere ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/ARGR_MYCTU ARGR_MYCTU]] Regulates arginine biosynthesis genes (By similarity).	+	[https://www.uniprot.org/uniprot/ARGR_MYCTU ARGR_MYCTU] Regulates arginine biosynthesis genes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 39:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Myctu~~]]	+	[[Category: Mycobacterium tuberculosis H37Rv]]
-	[[Category: Cherney~~, L T~~]]	+	[[Category: Cherney LT]]
-	[[Category: Cherney~~, M M~~]]	+	[[Category: Cherney MM]]
-	[[Category: Garen~~, C R~~]]	+	[[Category: Garen CR]]
-	[[Category: James~~, M N~~]]	+	[[Category: James MN]]
-	[[Category: Lu~~, G J]]~~	+	[[Category: Lu GJ]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Amino-acid biosynthesis]]~~	+
-	~~[[Category: Arginine biosynthesis]]~~	+
-	~~[[Category: Arginine repressor protein]]~~	+
-	~~[[Category: Argr-operator complex]]~~	+
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Dna binding protein-dna complex]]~~	+
-	~~[[Category: Dna-binding]]~~	+
-	~~[[Category: Mycobacterium tuberculosis]]~~	+
-	~~[[Category: Tbsgc]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription regulation~~]]	+

OCA at 09:14, 23 February 2022

OCA — Wed, 23 Feb 2022 09:14:19 GMT

←Older revision		Revision as of 09:14, 23 February 2022
Line 1:		Line 1:

	==Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator==		==Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator==
-	<StructureSection load='3ere' size='340' side='right' caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='3ere' size='340' side='right'caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ERE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [~~http~~://pdbe.org/3ere PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ere PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ere ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [https://pdbe.org/3ere PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [https://www.ebi.ac.uk/pdbsum/3ere PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ere ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/ARGR_MYCTU ARGR_MYCTU]] Regulates arginine biosynthesis genes (By similarity).	+	[[https://www.uniprot.org/uniprot/ARGR_MYCTU ARGR_MYCTU]] Regulates arginine biosynthesis genes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:

	==See Also==		==See Also==
-	*[[Arginine repressor\|Arginine repressor]]	+	*[[Arginine repressor 3D structures\|Arginine repressor 3D structures]]
	*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing\|Tomato aspermy virus protein 2b Suppression of RNA Silencing]]		*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing\|Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
-	*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing\|User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Myctu]]		[[Category: Myctu]]
	[[Category: Cherney, L T]]		[[Category: Cherney, L T]]

OCA at 21:46, 2 December 2018

OCA — Sun, 02 Dec 2018 21:46:18 GMT

←Older revision		Revision as of 21:46, 2 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator==		==Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator==
	<StructureSection load='3ere' size='340' side='right' caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3ere' size='340' side='right' caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://pdbe.org/3ere PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://pdbe.org/3ere PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ere ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3ere_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3ere_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 13:07, 7 February 2016

OCA — Sun, 07 Feb 2016 13:07:10 GMT

←Older revision		Revision as of 13:07, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3ere' size='340' side='right' caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='3ere' size='340' side='right' caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mycobacterium_tuberculosis Mycobacterium tuberculosis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1773 Mycobacterium tuberculosis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://pdbe.org/3ere PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ere ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3ere" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 37:		Line 38:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mycobacterium tuberculosis~~]]	+	[[Category: Myctu]]
	[[Category: Cherney, L T]]		[[Category: Cherney, L T]]
	[[Category: Cherney, M M]]		[[Category: Cherney, M M]]
Line 51:		Line 52:
	[[Category: Dna binding protein-dna complex]]		[[Category: Dna binding protein-dna complex]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
		+	[[Category: Mycobacterium tuberculosis]]
	[[Category: Tbsgc]]		[[Category: Tbsgc]]
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]

OCA at 15:17, 24 December 2014

OCA — Wed, 24 Dec 2014 15:17:47 GMT

←Older revision		Revision as of 15:17, 24 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ARGR_MYCTU ARGR_MYCTU]] Regulates arginine biosynthesis genes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 14:16, 17 December 2014

OCA — Wed, 17 Dec 2014 14:16:35 GMT

←Older revision		Revision as of 14:16, 17 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3ere\| PDB=3ere \| SCENE= }}~~	+	==Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator==
-	===Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator===	+	<StructureSection load='3ere' size='340' side='right' caption='[[3ere]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{ABSTRACT_PUBMED_18952097}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3ere]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERE FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bue\|3bue]], [[2zfz\|2zfz]], [[3cag\|3cag]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, ahrC, Rv1657, MT1695, MTCY06H11.22 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ere FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ere OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ere RCSB], [http://www.ebi.ac.uk/pdbsum/3ere PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3ere_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The arginine repressor (ArgR) from Mycobacterium tuberculosis (Mtb) is a gene product encoded by the open reading frame Rv1657. It regulates the L-arginine concentration in cells by interacting with ARG boxes in the promoter regions of the arginine biosynthesis and catabolism operons. Here we present a 2.5-A structure of MtbArgR in complex with a 16-bp DNA operator in the absence of arginine. A biological trimer of the protein-DNA complex is formed via the crystallographic 3-fold symmetry axis. The N-terminal domain of MtbArgR has a winged helix-turn-helix motif that binds to the major groove of the DNA. This structure shows that, in the absence of arginine, the ArgR trimer can bind three ARG box half-sites. It also reveals the structure of the whole MtbArgR molecule itself containing both N-terminal and C-terminal domains.

-	~~==About this Structure==~~	+	Crystal structure of the arginine repressor protein in complex with the DNA operator from Mycobacterium tuberculosis.,Cherney LT, Cherney MM, Garen CR, Lu GJ, James MN J Mol Biol. 2008 Dec 31;384(5):1330-40. Epub 2008 Oct 15. PMID:18952097<ref>PMID:18952097</ref>
-	~~[[3ere]] is a 3 chain~~ structure with ~~sequence~~ from ~~[http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis~~ Mycobacterium tuberculosis]. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3ERE OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
		+	*[[Arginine repressor\|Arginine repressor]]
	*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing\|Tomato aspermy virus protein 2b Suppression of RNA Silencing]]		*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing\|Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
	*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing\|User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]		*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing\|User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:018952097<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Mycobacterium tuberculosis]]		[[Category: Mycobacterium tuberculosis]]
-	[[Category: Cherney, L T.]]	+	[[Category: Cherney, L T]]
-	[[Category: Cherney, M M.]]	+	[[Category: Cherney, M M]]
-	[[Category: Garen, C R.]]	+	[[Category: Garen, C R]]
-	[[Category: James, M N.]]	+	[[Category: James, M N]]
-	[[Category: Lu, G J.]]	+	[[Category: Lu, G J]]
-	[[Category: ~~TBSGC, TB~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
	[[Category: Amino-acid biosynthesis]]		[[Category: Amino-acid biosynthesis]]
	[[Category: Arginine biosynthesis]]		[[Category: Arginine biosynthesis]]
Line 26:		Line 49:
	[[Category: Dna binding protein-dna complex]]		[[Category: Dna binding protein-dna complex]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
-	[[Category: Mycobacterium tuberculosis]]
-	[[Category: Structural genomic]]
-	[[Category: Tb structural genomic]]
-	[[Category: Tb structural genomics consortium]]
	[[Category: Tbsgc]]		[[Category: Tbsgc]]
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]

OCA at 09:54, 11 March 2013

OCA — Mon, 11 Mar 2013 09:54:26 GMT

←Older revision		Revision as of 09:54, 11 March 2013
Line 1:		Line 1:
-	[[Image:3ere.png\|left\|200px]]
-
	{{STRUCTURE_3ere\| PDB=3ere \| SCENE= }}		{{STRUCTURE_3ere\| PDB=3ere \| SCENE= }}
-
	===Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator===		===Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator===
-
	{{ABSTRACT_PUBMED_18952097}}		{{ABSTRACT_PUBMED_18952097}}

OCA at 06:44, 20 October 2012

OCA — Sat, 20 Oct 2012 06:44:11 GMT

←Older revision		Revision as of 06:44, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3ere]] is a 3 chain structure ~~of [[Tomato aspermy virus protein 2b Suppression of RNA Silencing]]~~ with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA].	+	[[3ere]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA].

	==See Also==		==See Also==

OCA at 14:08, 25 July 2012

OCA — Wed, 25 Jul 2012 14:08:26 GMT

←Older revision		Revision as of 14:08, 25 July 2012
Line 1:		Line 1:
	[[Image:3ere.png\|left\|200px]]		[[Image:3ere.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ere", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ere\| PDB=3ere \| SCENE= }}		{{STRUCTURE_3ere\| PDB=3ere \| SCENE= }}

	===Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator===		===Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18952097}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18952097 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18952097}}		{{ABSTRACT_PUBMED_18952097}}

	==About this Structure==		==About this Structure==
-	[[3ere]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mycobacterium_tuberculosis_h37rv~~ Mycobacterium tuberculosis ~~h37rv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA].	+	[[3ere]] is a 3 chain structure of [[Tomato aspermy virus protein 2b Suppression of RNA Silencing]] with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERE OCA].

	==See Also==		==See Also==
-	*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing]]	+	*[[Tomato aspermy virus protein 2b Suppression of RNA Silencing\|Tomato aspermy virus protein 2b Suppression of RNA Silencing]]
-	*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]	+	*[[User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing\|User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18952097~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018952097</ref><references group="xtra"/>
-	[[Category: Mycobacterium tuberculosis ~~h37rv~~]]	+	[[Category: Mycobacterium tuberculosis]]
	[[Category: Cherney, L T.]]		[[Category: Cherney, L T.]]
	[[Category: Cherney, M M.]]		[[Category: Cherney, M M.]]
Line 38:		Line 27:
	[[Category: Arginine repressor protein]]		[[Category: Arginine repressor protein]]
	[[Category: Argr-operator complex]]		[[Category: Argr-operator complex]]
-	[[Category: Cytoplasm]]
	[[Category: Dna binding]]		[[Category: Dna binding]]
-	[[Category: Dna binding protein/dna complex]]	+	[[Category: Dna binding protein-dna complex]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
	[[Category: Mycobacterium tuberculosis]]		[[Category: Mycobacterium tuberculosis]]
Line 49:		Line 37:
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
-	[[Category: X-ray crystallography]]

OCA: Protected "3ere" [edit=sysop:move=sysop]

OCA — Sun, 09 Jan 2011 10:49:14 GMT

Protected "3ere" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:49, 9 January 2011