3ero - Revision history

OCA at 06:32, 6 September 2023

OCA — Wed, 06 Sep 2023 06:32:08 GMT

←Older revision		Revision as of 06:32, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3ero' size='340' side='right'caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3ero' size='340' side='right'caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus~~ aureus~~" (rosenbach 1884) zopf 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE~~-3,~~5-DIPHOSPHATE'>THP</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>nuc ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1280~~ "~~Micrococcus aureus~~" ~~(Rosenbach 1884) Zopf 1885])</td~~><~~/tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[https~~:~~//en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease]~~, ~~with EC number [https://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [https://pdbe.org/3ero PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [https://www.ebi.ac.uk/pdbsum/3ero PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ero ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [https://pdbe.org/3ero PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [https://www.ebi.ac.uk/pdbsum/3ero PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ero ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.	+	[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Micrococcal nuclease~~]]	+	[[Category: Staphylococcus aureus]]
-	[[Category: Garcia-Moreno~~, E B~~]]	+	[[Category: Garcia-Moreno EB]]
-	[[Category: Robinson~~, A C~~]]	+	[[Category: Robinson AC]]
-	[[Category: Schlessman~~, J L]]~~	+	[[Category: Schlessman JL]]
-	~~[[Category: Calcium]]~~	+
-	~~[[Category: Endonuclease]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Hyperstable variant]]~~	+
-	~~[[Category: Membrane]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Nuclease]]~~	+
-	~~[[Category: Pdtp]]~~	+
-	~~[[Category: Secreted]]~~	+
-	~~[[Category: Staphylococcal nuclease]]~~	+
-	~~[[Category: Zymogen~~]]	+

OCA at 19:45, 20 October 2021

OCA — Wed, 20 Oct 2021 19:45:22 GMT

←Older revision		Revision as of 19:45, 20 October 2021
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	==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature==		==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature==
-	<StructureSection load='3ero' size='340' side='right' caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='3ero' size='340' side='right'caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ERO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [~~http~~://pdbe.org/3ero PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ero PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ero ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [https://pdbe.org/3ero PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [https://www.ebi.ac.uk/pdbsum/3ero PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ero ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.	+	[[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]	+	*[[Staphylococcal nuclease 3D structures\|Staphylococcal nuclease 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Garcia-Moreno, E B]]		[[Category: Garcia-Moreno, E B]]

OCA at 21:36, 2 December 2018

OCA — Sun, 02 Dec 2018 21:36:00 GMT

←Older revision		Revision as of 21:36, 2 December 2018
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3ero_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3ero_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:
	[[Category: Robinson, A C]]		[[Category: Robinson, A C]]
	[[Category: Schlessman, J L]]		[[Category: Schlessman, J L]]
		+	[[Category: Calcium]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 21:33, 4 August 2016

OCA — Thu, 04 Aug 2016 21:33:56 GMT

←Older revision		Revision as of 21:33, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature==		==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature==
	<StructureSection load='3ero' size='340' side='right' caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3ero' size='340' side='right' caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Staphylococcus_aureus Staphylococcus~~ aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 ~~Staphylococcus~~ aureus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [http://www.ebi.ac.uk/pdbsum/3ero PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [http://pdbe.org/3ero PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [http://www.ebi.ac.uk/pdbsum/3ero PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ero ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ero ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 27:		Line 28:
	</StructureSection>		</StructureSection>
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
-	[[Category: Staphylococcus aureus]]
	[[Category: Garcia-Moreno, E B]]		[[Category: Garcia-Moreno, E B]]
	[[Category: Robinson, A C]]		[[Category: Robinson, A C]]

OCA at 13:19, 25 December 2014

OCA — Thu, 25 Dec 2014 13:19:55 GMT

←Older revision		Revision as of 13:19, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERO FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [http://www.ebi.ac.uk/pdbsum/3ero PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [http://www.ebi.ac.uk/pdbsum/3ero PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 28:
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]
-	[[Category: Garcia-Moreno, E B.]]	+	[[Category: Garcia-Moreno, E B]]
-	[[Category: Robinson, A C.]]	+	[[Category: Robinson, A C]]
-	[[Category: Schlessman, J L.]]	+	[[Category: Schlessman, J L]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 10:58, 29 September 2014

OCA — Mon, 29 Sep 2014 10:58:33 GMT

←Older revision		Revision as of 10:58, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3ero.png\|left\|200px]]~~	+	==Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature==
-		+	<StructureSection load='3ero' size='340' side='right' caption='[[3ero]], [[Resolution\|resolution]] 1.85Å' scene=''>
-	~~{{STRUCTURE_3ero\| PDB=3ero \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ERO FirstGlance]. <br>
-	===Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rbm\|2rbm]], [[3bdc\|3bdc]], [[3c1e\|3c1e]], [[3c1f\|3c1f]], [[3d4d\|3d4d]], [[3d6c\|3d6c]], [[3dmu\|3dmu]], [[3e5s\|3e5s]], [[3eji\|3eji]], [[3erq\|3erq]], [[3evq\|3evq]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ero FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ero OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ero RCSB], [http://www.ebi.ac.uk/pdbsum/3ero PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3ero_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]		*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]

OCA: Protected "3ero" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 17:09:56 GMT

Protected "3ero" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:09, 20 October 2012

OCA at 17:09, 20 October 2012

OCA — Sat, 20 Oct 2012 17:09:55 GMT

←Older revision		Revision as of 17:09, 20 October 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3ero.png\|left\|200px]]		[[Image:3ero.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ero", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ero\| PDB=3ero \| SCENE= }}		{{STRUCTURE_3ero\| PDB=3ero \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3ERO~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA].	+	[[3ero]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA].
		+
		+	==See Also==
		+	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]
Line 20:		Line 16:
	[[Category: Robinson, A C.]]		[[Category: Robinson, A C.]]
	[[Category: Schlessman, J L.]]		[[Category: Schlessman, J L.]]
-	[[Category: Calcium]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
Line 31:		Line 26:
	[[Category: Staphylococcal nuclease]]		[[Category: Staphylococcal nuclease]]
	[[Category: Zymogen]]		[[Category: Zymogen]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:14:50 2009''

OCA at 15:14, 17 February 2009

OCA — Tue, 17 Feb 2009 15:14:51 GMT

←Older revision		Revision as of 15:14, 17 February 2009
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3ero.~~jpg~~\|left\|200px]]	+	[[Image:3ero.png\|left\|200px]]

	<!--		<!--
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3ERO is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA].	+	3ERO is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA].
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
-	[[Category: Single protein]]
	[[Category: Staphylococcus aureus]]		[[Category: Staphylococcus aureus]]
	[[Category: Garcia-Moreno, E B.]]		[[Category: Garcia-Moreno, E B.]]
Line 33:		Line 32:
	[[Category: Zymogen]]		[[Category: Zymogen]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Nov 5 13~~:00:~~48 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:14:50 2009''

OCA at 11:00, 5 November 2008

OCA — Wed, 05 Nov 2008 11:00:49 GMT

←Older revision		Revision as of 11:00, 5 November 2008
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3ero.jpg\|left\|200px]]

-	The ~~entry 3ero~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ero", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ero\| PDB=3ero \| SCENE= }}

-	~~Authors: Robinson, A.C., Schlessman, J.L., Garcia-Moreno E., B.~~	+	===Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature===

-	Description: Crystal structure of Staphylococcal nuclease variant Delta+PHS I72E at cryogenic temperature

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Oct 22 10~~:17:53 2008''	+	==About this Structure==
		+	3ERO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERO OCA].
		+	[[Category: Micrococcal nuclease]]
		+	[[Category: Single protein]]
		+	[[Category: Staphylococcus aureus]]
		+	[[Category: Garcia-Moreno, E B.]]
		+	[[Category: Robinson, A C.]]
		+	[[Category: Schlessman, J L.]]
		+	[[Category: Calcium]]
		+	[[Category: Endonuclease]]
		+	[[Category: Hydrolase]]
		+	[[Category: Hyperstable variant]]
		+	[[Category: Membrane]]
		+	[[Category: Metal-binding]]
		+	[[Category: Nuclease]]
		+	[[Category: Pdtp]]
		+	[[Category: Secreted]]
		+	[[Category: Staphylococcal nuclease]]
		+	[[Category: Zymogen]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 5 13:00:48 2008''