3exm - Revision history

OCA at 06:36, 6 September 2023

OCA — Wed, 06 Sep 2023 06:36:55 GMT

←Older revision		Revision as of 06:36, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3exm' size='340' side='right'caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3exm' size='340' side='right'caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Strco Strco~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.65Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3cbt\|3cbt]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></~~td><td class="sblockDat"~~>~~SCO5041~~, ~~SCK7.14, SCK7.14c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Nucleoside_diphosphate_phosphatase Nucleoside diphosphate phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [https://pdbe.org/3exm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [https://www.ebi.ac.uk/pdbsum/3exm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [https://pdbe.org/3exm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [https://www.ebi.ac.uk/pdbsum/3exm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9FBN7_STRCO Q9FBN7_STRCO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Nucleoside diphosphate phosphatase]]~~	+	[[Category: Edwards AM]]
-	~~[[Category: Strco]]~~	+	[[Category: Joachimiak A]]
-	[[Category: Edwards~~, A M~~]]	+	[[Category: Savchenko A]]
-	[[Category: Joachimiak, A]]	+	[[Category: Singer AU]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Xu X]]
-	[[Category: Savchenko, A]]	+	[[Category: Yakunin AF]]
-	[[Category: Singer~~, A U~~]]	+	[[Category: Zheng H]]
-	[[Category: Xu, X]]	+
-	[[Category: Yakunin~~, A F~~]]	+
-	[[Category: Zheng, H]]	+
-	~~[[Category: Gdp/udp'ase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Lipocalcin fold]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Metalloprotein]]~~	+
-	~~[[Category: Non-hydrolysable gdp analogue]]~~	+
-	~~[[Category: Nucleoside diphosphatase]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Streptomyce~~]]	+

OCA at 09:18, 23 February 2022

OCA — Wed, 23 Feb 2022 09:18:55 GMT

←Older revision		Revision as of 09:18, 23 February 2022
Line 1:		Line 1:

	==Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP==		==Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP==
-	<StructureSection load='3exm' size='340' side='right' caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>	+	<StructureSection load='3exm' size='340' side='right'caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Strco Strco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3EXM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strco Strco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cbt\|3cbt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3cbt\|3cbt]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Nucleoside_diphosphate_phosphatase Nucleoside diphosphate phosphatase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nucleoside_diphosphate_phosphatase Nucleoside diphosphate phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [~~http~~://pdbe.org/3exm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3exm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3exm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [https://pdbe.org/3exm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [https://www.ebi.ac.uk/pdbsum/3exm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nucleoside diphosphate phosphatase]]		[[Category: Nucleoside diphosphate phosphatase]]
	[[Category: Strco]]		[[Category: Strco]]

OCA at 21:50, 2 December 2018

OCA — Sun, 02 Dec 2018 21:50:45 GMT

←Older revision		Revision as of 21:50, 2 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP==		==Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP==
	<StructureSection load='3exm' size='340' side='right' caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3exm' size='340' side='right' caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside_diphosphate_phosphatase Nucleoside diphosphate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside_diphosphate_phosphatase Nucleoside diphosphate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [http://pdbe.org/3exm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [http://www.ebi.ac.uk/pdbsum/3exm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [http://pdbe.org/3exm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [http://www.ebi.ac.uk/pdbsum/3exm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3exm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:38, 10 February 2016

OCA — Wed, 10 Feb 2016 01:38:50 GMT

←Older revision		Revision as of 01:38, 10 February 2016
Line 2:		Line 2:
	<StructureSection load='3exm' size='340' side='right' caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='3exm' size='340' side='right' caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_coelicolor_a3(2) Streptomyces coelicolor a3(2)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Strco Strco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cbt\|3cbt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cbt\|3cbt]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 ~~Streptomyces coelicolor A3(2)~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 STRCO])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside~~-diphosphatase Nucleoside-diphosphatase~~], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside_diphosphate_phosphatase Nucleoside diphosphate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [http://www.ebi.ac.uk/pdbsum/3exm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [http://pdbe.org/3exm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [http://www.ebi.ac.uk/pdbsum/3exm PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3exm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Nucleoside~~-diphosphatase~~]]	+	[[Category: Nucleoside diphosphate phosphatase]]
		+	[[Category: Strco]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 08:34, 26 November 2014

OCA — Wed, 26 Nov 2014 08:34:37 GMT

←Older revision		Revision as of 08:34, 26 November 2014
Line 1:		Line 1:
-	~~[[Image:3exm.png\|left\|200px]]~~	+	==Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP==
-		+	<StructureSection load='3exm' size='340' side='right' caption='[[3exm]], [[Resolution\|resolution]] 1.65Å' scene=''>
-	~~{{STRUCTURE_3exm\| PDB=3exm \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor_a3(2) Streptomyces coelicolor a3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXM FirstGlance]. <br>
-	===Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cbt\|3cbt]]</td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SCO5041, SCK7.14, SCK7.14c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=100226 Streptomyces coelicolor A3(2)])</td></tr>
-	==~~About this Structure~~==	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphatase Nucleoside-diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.6 3.6.1.6] </span></td></tr>
-	[[3exm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor_a3(2) Streptomyces coelicolor a3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA].	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [http://www.ebi.ac.uk/pdbsum/3exm PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Nucleoside-diphosphatase]]		[[Category: Nucleoside-diphosphatase]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Singer, A U.]]	+	[[Category: Singer, A U]]
-	[[Category: Xu, X.]]	+	[[Category: Xu, X]]
-	[[Category: Yakunin, A F.]]	+	[[Category: Yakunin, A F]]
-	[[Category: Zheng, H.]]	+	[[Category: Zheng, H]]
	[[Category: Gdp/udp'ase]]		[[Category: Gdp/udp'ase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
Line 22:		Line 35:
	[[Category: Mcsg]]		[[Category: Mcsg]]
	[[Category: Metalloprotein]]		[[Category: Metalloprotein]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Non-hydrolysable gdp analogue]]		[[Category: Non-hydrolysable gdp analogue]]
	[[Category: Nucleoside diphosphatase]]		[[Category: Nucleoside diphosphatase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2~~]]	+
	[[Category: Streptomyce]]		[[Category: Streptomyce]]
-	[[Category: Structural genomic]]

OCA: Protected "3exm" [edit=sysop:move=sysop]

OCA — Wed, 06 Feb 2013 13:18:04 GMT

Protected "3exm" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:18, 6 February 2013

OCA at 13:18, 6 February 2013

OCA — Wed, 06 Feb 2013 13:18:00 GMT

←Older revision		Revision as of 13:18, 6 February 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3exm.png\|left\|200px]]
-	[[Image:3exm.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3exm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3exm\| PDB=3exm \| SCENE= }}		{{STRUCTURE_3exm\| PDB=3exm \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3EXM~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA].	+	[[3exm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor_a3(2) Streptomyces coelicolor a3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA].
-	~~[[Category: Bacteria]]~~	+
	[[Category: Nucleoside-diphosphatase]]		[[Category: Nucleoside-diphosphatase]]
	[[Category: Edwards, A M.]]		[[Category: Edwards, A M.]]
Line 37:		Line 29:
	[[Category: Streptomyce]]		[[Category: Streptomyce]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:08:06 2008''

OCA at 13:08, 10 December 2008

OCA — Wed, 10 Dec 2008 13:08:06 GMT

←Older revision		Revision as of 13:08, 10 December 2008
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3exm.jpg\|left\|200px]]

-	The ~~entry 3exm~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3exm", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3exm\| PDB=3exm \| SCENE= }}

-	~~Authors: Singer, A.U., Xu, X., Zheng, H., Savchenko, A., Yakunin, A.F.~~	+	===Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP===

-	Description: Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Nov 20 07~~:40:14 2008''	+	==About this Structure==
		+	3EXM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA].
		+	[[Category: Bacteria]]
		+	[[Category: Nucleoside-diphosphatase]]
		+	[[Category: Edwards, A M.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Savchenko, A.]]
		+	[[Category: Singer, A U.]]
		+	[[Category: Xu, X.]]
		+	[[Category: Yakunin, A F.]]
		+	[[Category: Zheng, H.]]
		+	[[Category: Gdp/udp'ase]]
		+	[[Category: Hydrolase]]
		+	[[Category: Lipocalcin fold]]
		+	[[Category: Mcsg]]
		+	[[Category: Metalloprotein]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Non-hydrolysable gdp analogue]]
		+	[[Category: Nucleoside diphosphatase]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Streptomyce]]
		+	[[Category: Structural genomic]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:08:06 2008''

OCA at 05:40, 20 November 2008

OCA — Thu, 20 Nov 2008 05:40:14 GMT

←Older revision		Revision as of 05:40, 20 November 2008
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3exm is ON HOLD	+	The entry 3exm is ON HOLD until Paper Publication

	Authors: Singer, A.U., Xu, X., Zheng, H., Savchenko, A., Yakunin, A.F.		Authors: Singer, A.U., Xu, X., Zheng, H., Savchenko, A., Yakunin, A.F.
Line 7:		Line 7:
	Description: Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP		Description: Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Oct 29 10~~:30:04 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 20 07:40:14 2008''

OCA at 08:30, 29 October 2008

OCA — Wed, 29 Oct 2008 08:30:05 GMT

←Older revision		Revision as of 08:30, 29 October 2008
Line 3:		Line 3:
	The entry 3exm is ON HOLD		The entry 3exm is ON HOLD

-	Authors: ~~Proudfoot, M., Brown, M.,~~ Singer, A.U~~., Jobin, M.-C~~., Xu, X., Zheng, H~~., Chang, C., Edwards, A.M., Joachimiak, A~~., Savchenko, A., Yakunin, A.F.	+	Authors: Singer, A.U., Xu, X., Zheng, H., Savchenko, A., Yakunin, A.F.

-	Description: ~~The~~ structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP.	+	Description: Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 10:21:03 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 29 10:30:04 2008''