3exy - Revision history

OCA at 06:36, 6 September 2023

OCA — Wed, 06 Sep 2023 06:36:58 GMT

←Older revision		Revision as of 06:36, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3exy' size='340' side='right'caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>		<StructureSection load='3exy' size='340' side='right'caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXY FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.48Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]<~~/b></td>~~<td class="sblockDat">fdx ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [https://pdbe.org/3exy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [https://www.ebi.ac.uk/pdbsum/3exy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [https://pdbe.org/3exy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [https://www.ebi.ac.uk/pdbsum/3exy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/FER_ALLVD FER_ALLVD]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	+	[https://www.uniprot.org/uniprot/FER_ALLVD FER_ALLVD] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 37:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Allochromatium vinosum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Giastas, P]]	+	[[Category: Giastas P]]
-	[[Category: Mavridis~~, I M~~]]	+	[[Category: Mavridis IM]]
-	[[Category: Saridakis, E]]	+	[[Category: Saridakis E]]
-	~~[[Category: 4fe-4]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Ferredoxin]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Iron-sulfur]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 19:48, 20 October 2021

OCA — Wed, 20 Oct 2021 19:48:00 GMT

←Older revision		Revision as of 19:48, 20 October 2021
Line 1:		Line 1:

	==Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum==		==Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum==
-	<StructureSection load='3exy' size='340' side='right' caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>	+	<StructureSection load='3exy' size='340' side='right'caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3EXY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [~~http~~://pdbe.org/3exy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3exy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3exy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [https://pdbe.org/3exy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [https://www.ebi.ac.uk/pdbsum/3exy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/FER_ALLVD FER_ALLVD]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	+	[[https://www.uniprot.org/uniprot/FER_ALLVD FER_ALLVD]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:

	==See Also==		==See Also==
-	*[[Ferredoxin\|Ferredoxin]]	+	*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Giastas, P]]		[[Category: Giastas, P]]
	[[Category: Mavridis, I M]]		[[Category: Mavridis, I M]]

OCA at 21:45, 2 December 2018

OCA — Sun, 02 Dec 2018 21:45:42 GMT

←Older revision		Revision as of 21:45, 2 December 2018
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exy_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 40:		Line 40:
	[[Category: Mavridis, I M]]		[[Category: Mavridis, I M]]
	[[Category: Saridakis, E]]		[[Category: Saridakis, E]]
		+	[[Category: 4fe-4]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Ferredoxin]]		[[Category: Ferredoxin]]

OCA at 00:26, 5 August 2016

OCA — Fri, 05 Aug 2016 00:26:57 GMT

←Older revision		Revision as of 00:26, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum==		==Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum==
	<StructureSection load='3exy' size='340' side='right' caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>		<StructureSection load='3exy' size='340' side='right' caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Allochromatium_vinosum Allochromatium vinosum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 ~~Allochromatium vinosum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [http://www.ebi.ac.uk/pdbsum/3exy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [http://pdbe.org/3exy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [http://www.ebi.ac.uk/pdbsum/3exy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3exy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~FER_CHRVI FER_CHRVI~~]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	+	[[http://www.uniprot.org/uniprot/FER_ALLVD FER_ALLVD]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3exy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 29:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3exy" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 37:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Allochromatium vinosum]]
	[[Category: Giastas, P]]		[[Category: Giastas, P]]
	[[Category: Mavridis, I M]]		[[Category: Mavridis, I M]]

OCA at 14:21, 25 December 2014

OCA — Thu, 25 Dec 2014 14:21:43 GMT

←Older revision		Revision as of 14:21, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXY FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 Allochromatium vinosum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 Allochromatium vinosum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [http://www.ebi.ac.uk/pdbsum/3exy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [http://www.ebi.ac.uk/pdbsum/3exy PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FER_CHRVI FER_CHRVI]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
-	[[Category: Giastas, P.]]	+	[[Category: Giastas, P]]
-	[[Category: Mavridis, I M.]]	+	[[Category: Mavridis, I M]]
-	[[Category: Saridakis, E.]]	+	[[Category: Saridakis, E]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Ferredoxin]]		[[Category: Ferredoxin]]

OCA at 12:24, 29 September 2014

OCA — Mon, 29 Sep 2014 12:24:08 GMT

←Older revision		Revision as of 12:24, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3exy.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum==
		+	<StructureSection load='3exy' size='340' side='right' caption='[[3exy]], [[Resolution\|resolution]] 1.48Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3exy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXY FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1blu\|1blu]], [[3eun\|3eun]], [[1fdn\|1fdn]], [[2fdn\|2fdn]], [[2fgo\|2fgo]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fdx ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 Allochromatium vinosum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3exy RCSB], [http://www.ebi.ac.uk/pdbsum/3exy PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exy_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of the C57A and V13G molecular variants of Allochromatium vinosum 2[4Fe-4S] ferredoxin (AlvinFd) and that of the homologous ferredoxin from Escherichia coli (EcFd) have been determined at 1.05-, 1.48-, and 1.65-A resolution, respectively. The present structures combined with cyclic voltammetry studies establish clear effects of the degree of exposure of the cluster with the lowest reduction potential (cluster I) towards less negative reduction potentials (E degrees ). This is better illustrated by V13G AlvinFd (high exposure, E degrees = -594 mV) and EcFd (low exposure, E degrees = -675 mV). In C57A AlvinFd, the movement of the protein backbone, as a result of replacing the noncoordinating Cys57 by Ala, leads to a +50-mV upshift of the potential of the nearby cluster I, by removal of polar interactions involving the thiolate group and adjustment of the hydrogen-bond network involving the cluster atoms. In addition, the present structures and other previously reported accurate structures of this family of ferredoxins indicate that polar interactions of side chains and water molecules with cluster II sulfur atoms, which are absent in the environment of cluster I, are correlated to the approximately 180-250 mV difference between the reduction potentials of clusters I and II. These findings provide insight into the significant effects of subtle structural differences of the protein and solvent environment around the clusters of [4Fe-4S] ferredoxins on their electrochemical properties.

-	~~{{STRUCTURE_3exy\| PDB=3exy \| SCENE= }}~~	+	Insight into the protein and solvent contributions to the reduction potentials of [4Fe-4S](2+/+) clusters: crystal structures of the Allochromatium vinosum ferredoxin variants C57A and V13G and the homologous Escherichia coli ferredoxin.,Saridakis E, Giastas P, Efthymiou G, Thoma V, Moulis JM, Kyritsis P, Mavridis IM J Biol Inorg Chem. 2009 Mar 17. PMID:19290553<ref>PMID:19290553</ref>

-	~~===Crystal structure~~ of the ~~2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19290553}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3exy]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Allochromatium_vinosum Allochromatium vinosum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA].~~	+

	==See Also==		==See Also==
	*[[Ferredoxin\|Ferredoxin]]		*[[Ferredoxin\|Ferredoxin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019290553<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
	[[Category: Giastas, P.]]		[[Category: Giastas, P.]]

OCA at 17:45, 20 October 2012

OCA — Sat, 20 Oct 2012 17:45:50 GMT

←Older revision		Revision as of 17:45, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[3exy]] is a 1 chain structure ~~of [[Ferredoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA].	+	[[3exy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA].

	==See Also==		==See Also==

OCA: Protected "3exy" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 01:54:49 GMT

Protected "3exy" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:54, 27 July 2012

OCA at 01:54, 27 July 2012

OCA — Fri, 27 Jul 2012 01:54:47 GMT

←Older revision		Revision as of 01:54, 27 July 2012
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-	{{Seed}}
	[[Image:3exy.png\|left\|200px]]		[[Image:3exy.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3exy", creates the "Structure Box" on the page.
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	{{STRUCTURE_3exy\| PDB=3exy \| SCENE= }}		{{STRUCTURE_3exy\| PDB=3exy \| SCENE= }}

	===Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum===		===Crystal structure of the 2[4Fe-4S] ferredoxin V13G variant from allochromatium vinosum===

-
-	<!--
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	{{ABSTRACT_PUBMED_19290553}}		{{ABSTRACT_PUBMED_19290553}}

	==About this Structure==		==About this Structure==
-	~~3EXY~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA].	+	[[3exy]] is a 1 chain structure of [[Ferredoxin]] with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXY OCA].
		+
		+	==See Also==
		+	*[[Ferredoxin\|Ferredoxin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19290553~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019290553</ref><references group="xtra"/>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
	[[Category: Giastas, P.]]		[[Category: Giastas, P.]]
	[[Category: Mavridis, I M.]]		[[Category: Mavridis, I M.]]
	[[Category: Saridakis, E.]]		[[Category: Saridakis, E.]]
-	[[Category: 4fe-4]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Ferredoxin]]		[[Category: Ferredoxin]]
Line 35:		Line 25:
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 24 20:30:13 2009''

OCA at 17:25, 24 June 2009

OCA — Wed, 24 Jun 2009 17:25:35 GMT

←Older revision		Revision as of 17:25, 24 June 2009
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	{{Seed}}		{{Seed}}
-	[[Image:3exy.~~jpg~~\|left\|200px]]	+	[[Image:3exy.png\|left\|200px]]

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-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~May 6 10~~:23:00 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 24 20:30:13 2009''