3f5w - Revision history

OCA at 00:28, 28 December 2023

OCA — Thu, 28 Dec 2023 00:28:47 GMT

←Older revision		Revision as of 00:28, 28 December 2023
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	<StructureSection load='3f5w' size='340' side='right'caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='3f5w' size='340' side='right'caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"actinomyces_lividans"_krasil'nikov_et_al._1965 "actinomyces lividans" krasil'nikov et al. 1965~~] and [https://en.wikipedia.org/wiki/~~Mus_musculus Mus musculus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F5W FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=K:POTASSIUM+ION'>K</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.3Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [https://pdbe.org/3f5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [https://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [https://pdbe.org/3f5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [https://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/KCSA_STRLI KCSA_STRLI]] Acts as a pH-gated potassium ion channel; changing the cytosolic pH from 7 to 4 opens the channel, although it is not clear if this is the physiological stimulus for channel opening. Monovalent cation preference is K(+) > Rb(+) > NH4(+) >> Na(+) > Li(+).<ref>PMID:7489706</ref>	+	[https://www.uniprot.org/uniprot/KCSA_STRLI KCSA_STRLI] Acts as a pH-gated potassium ion channel; changing the cytosolic pH from 7 to 4 opens the channel, although it is not clear if this is the physiological stimulus for channel opening. Monovalent cation preference is K(+) > Rb(+) > NH4(+) >> Na(+) > Li(+).<ref>PMID:7489706</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Actinomyces lividans krasil'nikov et al. 1965]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
-	[[Category: ~~Cortes, D M~~]]	+	[[Category: Streptomyces lividans]]
-	[[Category: ~~Cuello, L G~~]]	+	[[Category: Cortes DM]]
-	[[Category: ~~Jogini, V~~]]	+	[[Category: Cuello LG]]
-	[[Category: ~~Perozo, E~~]]	+	[[Category: Jogini V]]
-	[[Category: ~~Cell membrane]]~~	+	[[Category: Perozo E]]
-	~~[[Category: Inactivated]]~~	+
-	~~[[Category: Ion transport]]~~	+
-	~~[[Category: Ionic channel]]~~	+
-	~~[[Category: Kcsa]]~~	+
-	~~[[Category: Membrane]]~~	+
-	~~[[Category: Membrane protein-metal transport complex]]~~	+
-	~~[[Category: Open]]~~	+
-	~~[[Category: Potassium channel]]~~	+
-	~~[[Category: Transmembrane]]~~	+
-	~~[[Category: Transport]]~~	+
-	~~[[Category: Voltage-gated channel~~]]	+

OCA at 19:49, 20 October 2021

OCA — Wed, 20 Oct 2021 19:49:57 GMT

←Older revision		Revision as of 19:49, 20 October 2021
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	<StructureSection load='3f5w' size='340' side='right'caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='3f5w' size='340' side='right'caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"actinomyces_lividans"_krasil'nikov_et_al._1965 "actinomyces lividans" krasil'nikov et al. 1965] and [~~http~~://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3F5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_lividans"_krasil'nikov_et_al._1965 "actinomyces lividans" krasil'nikov et al. 1965] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F5W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [~~http~~://pdbe.org/3f5w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [https://pdbe.org/3f5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [https://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/KCSA_STRLI KCSA_STRLI]] Acts as a pH-gated potassium ion channel; changing the cytosolic pH from 7 to 4 opens the channel, although it is not clear if this is the physiological stimulus for channel opening. Monovalent cation preference is K(+) > Rb(+) > NH4(+) >> Na(+) > Li(+).<ref>PMID:7489706</ref>	+	[[https://www.uniprot.org/uniprot/KCSA_STRLI KCSA_STRLI]] Acts as a pH-gated potassium ion channel; changing the cytosolic pH from 7 to 4 opens the channel, although it is not clear if this is the physiological stimulus for channel opening. Monovalent cation preference is K(+) > Rb(+) > NH4(+) >> Na(+) > Li(+).<ref>PMID:7489706</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	*[[Antibody 3D structures\|Antibody 3D structures]]		*[[Antibody 3D structures\|Antibody 3D structures]]
	*[[Potassium channel 3D structures\|Potassium channel 3D structures]]		*[[Potassium channel 3D structures\|Potassium channel 3D structures]]
		+	*[[3D structures of non-human antibody\|3D structures of non-human antibody]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:01, 3 June 2020

OCA — Wed, 03 Jun 2020 07:01:12 GMT

←Older revision		Revision as of 07:01, 3 June 2020
Line 1:		Line 1:

	==KcsA Potassium channel in the open-inactivated state with 32 A opening at T112==		==KcsA Potassium channel in the open-inactivated state with 32 A opening at T112==
-	<StructureSection load='3f5w' size='340' side='right' caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>	+	<StructureSection load='3f5w' size='340' side='right'caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_lividans"_krasil'nikov_et_al._1965 "actinomyces lividans" krasil'nikov et al. 1965] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3F5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_lividans"_krasil'nikov_et_al._1965 "actinomyces lividans" krasil'nikov et al. 1965] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3F5W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://pdbe.org/3f5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://pdbe.org/3f5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	==See Also==		==See Also==
	*[[Antibody 3D structures\|Antibody 3D structures]]		*[[Antibody 3D structures\|Antibody 3D structures]]
-	*[[Potassium ~~Channel~~\|Potassium ~~Channel~~]]	+	*[[Potassium channel 3D structures\|Potassium channel 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Actinomyces lividans krasil'nikov et al. 1965]]		[[Category: Actinomyces lividans krasil'nikov et al. 1965]]
		+	[[Category: Large Structures]]
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Cortes, D M]]		[[Category: Cortes, D M]]

OCA at 07:42, 29 August 2018

OCA — Wed, 29 Aug 2018 07:42:57 GMT

←Older revision		Revision as of 07:42, 29 August 2018
Line 3:		Line 3:
	<StructureSection load='3f5w' size='340' side='right' caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='3f5w' size='340' side='right' caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mus_musculus Mus musculus~~] and [http://en.wikipedia.org/wiki/~~Streptomyces_lividans Streptomyces lividans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F5W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_lividans"_krasil'nikov_et_al._1965 "actinomyces lividans" krasil'nikov et al. 1965] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F5W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/3f5w_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/3f5w_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:

	==See Also==		==See Also==
		+	*[[Antibody 3D structures\|Antibody 3D structures]]
	*[[Potassium Channel\|Potassium Channel]]		*[[Potassium Channel\|Potassium Channel]]
-	*[[3D structures of antibody\|3D structures of antibody]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Actinomyces lividans krasil'nikov et al. 1965]]
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
-	[[Category: Streptomyces lividans]]
	[[Category: Cortes, D M]]		[[Category: Cortes, D M]]
	[[Category: Cuello, L G]]		[[Category: Cuello, L G]]

OCA at 22:47, 5 August 2016

OCA — Fri, 05 Aug 2016 22:47:00 GMT

←Older revision		Revision as of 22:47, 5 August 2016
Line 1:		Line 1:
		+
	==KcsA Potassium channel in the open-inactivated state with 32 A opening at T112==		==KcsA Potassium channel in the open-inactivated state with 32 A opening at T112==
	<StructureSection load='3f5w' size='340' side='right' caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='3f5w' size='340' side='right' caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://pdbe.org/3f5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f5w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f5w ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

	==See Also==		==See Also==
-	*[[Antibody\|Antibody]]
	*[[Potassium Channel\|Potassium Channel]]		*[[Potassium Channel\|Potassium Channel]]
		+	*[[3D structures of antibody\|3D structures of antibody]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 22:35, 25 December 2014

OCA — Thu, 25 Dec 2014 22:35:47 GMT

←Older revision		Revision as of 22:35, 25 December 2014
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/KCSA_STRLI KCSA_STRLI]] Acts as a pH-gated potassium ion channel; changing the cytosolic pH from 7 to 4 opens the channel, although it is not clear if this is the physiological stimulus for channel opening. Monovalent cation preference is K(+) > Rb(+) > NH4(+) >> Na(+) > Li(+).<ref>PMID:7489706</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	*[[Antibody\|Antibody]]		*[[Antibody\|Antibody]]
	*[[Potassium Channel\|Potassium Channel]]		*[[Potassium Channel\|Potassium Channel]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:55, 26 November 2014

OCA — Wed, 26 Nov 2014 08:55:43 GMT

←Older revision		Revision as of 08:55, 26 November 2014
Line 1:		Line 1:
-	~~[[Image:3f5w.png\|left\|200px]]~~	+	==KcsA Potassium channel in the open-inactivated state with 32 A opening at T112==
-		+	<StructureSection load='3f5w' size='340' side='right' caption='[[3f5w]], [[Resolution\|resolution]] 3.30Å' scene=''>
-	~~{{STRUCTURE_3f5w\| PDB=3f5w \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F5W FirstGlance]. <br>
-	===KcsA Potassium channel in the open-inactivated state with 32 A opening at T112===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3f7v\|3f7v]], [[3f7y\|3f7y]], [[3fb5\|3fb5]], [[3fb6\|3fb6]], [[3fb7\|3fb7]], [[3fb8\|3fb8]]</td></tr>
-	~~{{ABSTRACT_PUBMED_020613835}}~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f5w RCSB], [http://www.ebi.ac.uk/pdbsum/3f5w PDBsum]</span></td></tr>
-		+	</table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/3f5w_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
		+	*[[Antibody\|Antibody]]
	*[[Potassium Channel\|Potassium Channel]]		*[[Potassium Channel\|Potassium Channel]]
-		+	__TOC__
-	~~==Reference==~~	+	</StructureSection>
-	~~<ref group="xtra">PMID:020613835</ref>~~<~~references group="xtra"~~/>	+
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Streptomyces lividans]]		[[Category: Streptomyces lividans]]
-	[[Category: Cortes, D M.]]	+	[[Category: Cortes, D M]]
-	[[Category: Cuello, L G.]]	+	[[Category: Cuello, L G]]
-	[[Category: Jogini, V.]]	+	[[Category: Jogini, V]]
-	[[Category: Perozo, E.]]	+	[[Category: Perozo, E]]
	[[Category: Cell membrane]]		[[Category: Cell membrane]]
	[[Category: Inactivated]]		[[Category: Inactivated]]

OCA at 22:27, 20 October 2012

OCA — Sat, 20 Oct 2012 22:27:23 GMT

←Older revision		Revision as of 22:27, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3f5w]] is a 3 chain structure ~~of [[Potassium Channel]]~~ with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA].	+	[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA].

	==See Also==		==See Also==

OCA at 16:21, 27 July 2012

OCA — Fri, 27 Jul 2012 16:21:23 GMT

←Older revision		Revision as of 16:21, 27 July 2012
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	[[Image:3f5w.png\|left\|200px]]		[[Image:3f5w.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3f5w", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3f5w\| PDB=3f5w \| SCENE= }}		{{STRUCTURE_3f5w\| PDB=3f5w \| SCENE= }}

	===KcsA Potassium channel in the open-inactivated state with 32 A opening at T112===		===KcsA Potassium channel in the open-inactivated state with 32 A opening at T112===

		+	{{ABSTRACT_PUBMED_020613835}}

	==About this Structure==		==About this Structure==
-	[[3f5w]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA].	+	[[3f5w]] is a 3 chain structure of [[Potassium Channel]] with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Streptomyces_lividans Streptomyces lividans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F5W OCA].
		+
		+	==See Also==
		+	*[[Potassium Channel\|Potassium Channel]]
		+
		+	==Reference==
		+	<ref group="xtra">PMID:020613835</ref><references group="xtra"/>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Streptomyces lividans]]		[[Category: Streptomyces lividans]]
Line 20:		Line 21:
	[[Category: Jogini, V.]]		[[Category: Jogini, V.]]
	[[Category: Perozo, E.]]		[[Category: Perozo, E.]]
		+	[[Category: Cell membrane]]
		+	[[Category: Inactivated]]
		+	[[Category: Ion transport]]
		+	[[Category: Ionic channel]]
		+	[[Category: Kcsa]]
		+	[[Category: Membrane]]
		+	[[Category: Membrane protein-metal transport complex]]
		+	[[Category: Open]]
		+	[[Category: Potassium channel]]
		+	[[Category: Transmembrane]]
		+	[[Category: Transport]]
		+	[[Category: Voltage-gated channel]]

OCA: Protected "3f5w" [edit=sysop:move=sysop]

OCA — Wed, 09 Feb 2011 05:31:52 GMT

Protected "3f5w" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:31, 9 February 2011