3fcc - Revision history

OCA at 06:44, 6 September 2023

OCA — Wed, 06 Sep 2023 06:44:30 GMT

←Older revision		Revision as of 06:44, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3fcc' size='340' side='right'caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>		<StructureSection load='3fcc' size='340' side='right'caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Baccr Baccr~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FCC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_14579 Bacillus cereus ATCC 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FCC FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ATP:ADENOSINE~~-~~5-TRIPHOSPHATE'>ATP</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.32Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[3dhv\|3dhv]], [[3fce\|3fce]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>BC_1372, dltA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~226900 BACCR])</td~~><~~/tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>[https://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [https://pdbe.org/3fcc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [https://www.ebi.ac.uk/pdbsum/3fcc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fcc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [https://pdbe.org/3fcc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [https://www.ebi.ac.uk/pdbsum/3fcc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fcc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR]] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).	+	[https://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Baccr~~]]	+	[[Category: Bacillus cereus ATCC 14579]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Du, L]]	+	[[Category: Du L]]
-	[[Category: He, Y]]	+	[[Category: He Y]]
-	[[Category: Luo, Y]]	+	[[Category: Luo Y]]
-	[[Category: Osman~~, K T]]~~	+	[[Category: Osman KT]]
-	~~[[Category: Adenylation]]~~	+
-	~~[[Category: Amp-forming domain]]~~	+
-	~~[[Category: Atp complex]]~~	+
-	~~[[Category: D-alanine]]~~	+
-	~~[[Category: D-alanine carrier protein ligase]]~~	+
-	~~[[Category: Dlta]]~~	+
-	~~[[Category: Ligase~~]]	+

OCA at 07:57, 2 March 2022

OCA — Wed, 02 Mar 2022 07:57:34 GMT

←Older revision		Revision as of 07:57, 2 March 2022
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM==		==CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM==
-	<StructureSection load='3fcc' size='340' side='right' caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>	+	<StructureSection load='3fcc' size='340' side='right'caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Baccr Baccr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3FCC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Baccr Baccr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FCC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dhv\|3dhv]], [[3fce\|3fce]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dhv\|3dhv]], [[3fce\|3fce]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BC_1372, dltA ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 BACCR])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BC_1372, dltA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 BACCR])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [~~http~~://pdbe.org/3fcc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3fcc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3fcc ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [https://pdbe.org/3fcc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [https://www.ebi.ac.uk/pdbsum/3fcc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fcc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR]] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).	+	[[https://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR]] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Baccr]]		[[Category: Baccr]]
		+	[[Category: Large Structures]]
	[[Category: Du, L]]		[[Category: Du, L]]
	[[Category: He, Y]]		[[Category: He, Y]]

OCA at 07:29, 5 December 2018

OCA — Wed, 05 Dec 2018 07:29:37 GMT

←Older revision		Revision as of 07:29, 5 December 2018
Line 16:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/3fcc_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/3fcc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 00:12, 5 August 2016

OCA — Fri, 05 Aug 2016 00:12:21 GMT

←Older revision		Revision as of 00:12, 5 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM==		==CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM==
	<StructureSection load='3fcc' size='340' side='right' caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>		<StructureSection load='3fcc' size='340' side='right' caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_cereus Bacillus cereus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FCC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baccr Baccr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FCC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dhv\|3dhv]], [[3fce\|3fce]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dhv\|3dhv]], [[3fce\|3fce]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BC_1372, dltA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1396 Bacillus cereus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BC_1372, dltA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 BACCR])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [http://www.ebi.ac.uk/pdbsum/3fcc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [http://pdbe.org/3fcc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [http://www.ebi.ac.uk/pdbsum/3fcc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fcc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fcc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 29:		Line 30:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3fcc" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus cereus~~]]	+	[[Category: Baccr]]
	[[Category: Du, L]]		[[Category: Du, L]]
	[[Category: He, Y]]		[[Category: He, Y]]

OCA at 14:16, 25 December 2014

OCA — Thu, 25 Dec 2014 14:16:55 GMT

←Older revision		Revision as of 14:16, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [http://www.ebi.ac.uk/pdbsum/3fcc PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [http://www.ebi.ac.uk/pdbsum/3fcc PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR]] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:47, 26 November 2014

OCA — Wed, 26 Nov 2014 08:47:55 GMT

←Older revision		Revision as of 08:47, 26 November 2014
Line 1:		Line 1:
-	[[~~Image:~~3fcc.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM==
		+	<StructureSection load='3fcc' size='340' side='right' caption='[[3fcc]], [[Resolution\|resolution]] 2.32Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3fcc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FCC FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3dhv\|3dhv]], [[3fce\|3fce]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BC_1372, dltA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-alanine--poly(phosphoribitol)_ligase D-alanine--poly(phosphoribitol) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.13 6.1.1.13] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fcc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fcc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fcc RCSB], [http://www.ebi.ac.uk/pdbsum/3fcc PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/3fcc_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	D-alanylation of lipoteichoic acids modulates the surface charge and ligand binding of the Gram-positive cell wall. Disruption of the bacterial dlt operon involved in teichoic acid alanylation, as well as inhibition of the DltA (D-alanyl carrier protein ligase) protein, has been shown to render the bacterium more susceptible to conventional antibiotics and host defense responses. The DltA catalyzes the adenylation and thiolation reactions of d-alanine. This enzyme belongs to a superfamily of AMP-forming domains such as the ubiquitous acetyl-coenzyme A synthetase. We have determined the 1.9-A-resolution crystal structure of a DltA protein from Bacillus cereus in complex with ATP. This structure sheds light on the geometry of the bound ATP. The invariant catalytic residue Lys492 appears to be mobile, suggesting a molecular mechanism of catalysis for this superfamily of enzymes. Specific roles are also revealed for two other invariant residues: the divalent cation-stabilizing Glu298 and the beta-phosphate-interacting Arg397. Mutant proteins with a glutamine substitution at position 298 or 397 are inactive.

-	~~{{STRUCTURE_3fcc\| PDB=3fcc \| SCENE= }}~~	+	Crystal structure of Bacillus cereus D-alanyl carrier protein ligase (DltA) in complex with ATP.,Osman KT, Du L, He Y, Luo Y J Mol Biol. 2009 May 1;388(2):345-55. Epub 2009 Mar 24. PMID:19324056<ref>PMID:19324056</ref>

-	~~===CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19324056}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3fcc]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacillus_cereus Bacillus cereus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019324056<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bacillus cereus]]		[[Category: Bacillus cereus]]
-	[[Category: Du, L.]]	+	[[Category: Du, L]]
-	[[Category: He, Y.]]	+	[[Category: He, Y]]
-	[[Category: Luo, Y.]]	+	[[Category: Luo, Y]]
-	[[Category: Osman, K T.]]	+	[[Category: Osman, K T]]
	[[Category: Adenylation]]		[[Category: Adenylation]]
	[[Category: Amp-forming domain]]		[[Category: Amp-forming domain]]

OCA: Protected "3fcc" [edit=sysop:move=sysop]

OCA — Wed, 13 Feb 2013 11:09:13 GMT

Protected "3fcc" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:09, 13 February 2013

OCA at 11:09, 13 February 2013

OCA — Wed, 13 Feb 2013 11:09:10 GMT

←Older revision		Revision as of 11:09, 13 February 2013
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-	{{Seed}}
	[[Image:3fcc.png\|left\|200px]]		[[Image:3fcc.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3fcc", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3fcc\| PDB=3fcc \| SCENE= }}		{{STRUCTURE_3fcc\| PDB=3fcc \| SCENE= }}

	===CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM===		===CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19324056}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19324056 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19324056}}		{{ABSTRACT_PUBMED_19324056}}

	==About this Structure==		==About this Structure==
-	~~3FCC~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Bacillus_cereus_atcc_14579~~ Bacillus cereus ~~atcc 14579~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA].	+	[[3fcc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19324056~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019324056</ref><references group="xtra"/>
-	[[Category: Bacillus cereus ~~atcc 14579~~]]	+	[[Category: Bacillus cereus]]
	[[Category: Du, L.]]		[[Category: Du, L.]]
	[[Category: He, Y.]]		[[Category: He, Y.]]
Line 32:		Line 20:
	[[Category: Amp-forming domain]]		[[Category: Amp-forming domain]]
	[[Category: Atp complex]]		[[Category: Atp complex]]
-	[[Category: Cytoplasm]]
	[[Category: D-alanine]]		[[Category: D-alanine]]
	[[Category: D-alanine carrier protein ligase]]		[[Category: D-alanine carrier protein ligase]]
	[[Category: Dlta]]		[[Category: Dlta]]
	[[Category: Ligase]]		[[Category: Ligase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 10:11:33 2009''

OCA at 07:11, 6 May 2009

OCA — Wed, 06 May 2009 07:11:34 GMT

←Older revision		Revision as of 07:11, 6 May 2009
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	{{Seed}}		{{Seed}}
-	[[Image:3fcc.~~jpg~~\|left\|200px]]	+	[[Image:3fcc.png\|left\|200px]]

	<!--		<!--
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	[[Category: Ligase]]		[[Category: Ligase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Apr 15~~ 10:14:41 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 10:11:33 2009''

OCA at 07:14, 15 April 2009

OCA — Wed, 15 Apr 2009 07:14:42 GMT

←Older revision		Revision as of 07:14, 15 April 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3fcc.jpg\|left\|200px]]

-	The ~~entry 3fcc~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3fcc", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3fcc\| PDB=3fcc \| SCENE= }}

-	~~Authors: Osman, K.T., Du, L., He, Y., Luo, Y.~~	+	===CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM===

-	Description: CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Dec 31 09~~:46:~~53 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19324056}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19324056 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19324056}}
		+
		+	==About this Structure==
		+	3FCC is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_14579 Bacillus cereus atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FCC OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19324056</ref><references group="xtra"/>
		+	[[Category: Bacillus cereus atcc 14579]]
		+	[[Category: Du, L.]]
		+	[[Category: He, Y.]]
		+	[[Category: Luo, Y.]]
		+	[[Category: Osman, K T.]]
		+	[[Category: Adenylation]]
		+	[[Category: Amp-forming domain]]
		+	[[Category: Atp complex]]
		+	[[Category: Cytoplasm]]
		+	[[Category: D-alanine]]
		+	[[Category: D-alanine carrier protein ligase]]
		+	[[Category: Dlta]]
		+	[[Category: Ligase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 10:14:41 2009''