3fnd - Revision history

OCA at 06:48, 6 September 2023

OCA — Wed, 06 Sep 2023 06:48:56 GMT

←Older revision		Revision as of 06:48, 6 September 2023
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	==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==		==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==
-	<StructureSection load='3fnd' size='340' side='right'caption='[[3fnd]]' scene=''>	+	<StructureSection load='3fnd' size='340' side='right'caption='[[3fnd]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FND FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fnd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FND FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [https://pdbe.org/3fnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [https://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fnd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [https://pdbe.org/3fnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [https://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fnd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8A3X9_BACTN Q8A3X9_BACTN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacteroides thetaiotaomicron]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Burley SK]]		[[Category: Burley SK]]
	[[Category: Damodharan L]]		[[Category: Damodharan L]]
	[[Category: Swaminathan S]]		[[Category: Swaminathan S]]

OCA at 08:05, 2 March 2022

OCA — Wed, 02 Mar 2022 08:05:53 GMT

←Older revision		Revision as of 08:05, 2 March 2022
Line 1:		Line 1:

	==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==		==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==
-	<StructureSection load='3fnd' size='340' side='right' caption='[[3fnd]]~~, [[Resolution\|resolution]] 1.90Å~~' scene=''>	+	<StructureSection load='3fnd' size='340' side='right'caption='[[3fnd]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3FND FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FND FirstGlance]. <br>
-	</td></tr>~~<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [https://pdbe.org/3fnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [https://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fnd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [~~http~~://pdbe.org/3fnd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3fnd ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 18:

	==See Also==		==See Also==
-	*[[Chitinase\|Chitinase]]	+	*[[Chitinase 3D structures\|Chitinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus thetaiotaomicron distaso 1912~~]]	+	[[Category: Large Structures]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Damodharan, L]]	+	[[Category: Damodharan L]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Swaminathan S]]
-	[[Category: Swaminathan, S]]	+
-	~~[[Category: Chitinase]]~~	+
-	~~[[Category: Glycosidase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Tim-barrel~~]]	+

OCA at 08:09, 5 December 2018

OCA — Wed, 05 Dec 2018 08:09:16 GMT

←Older revision		Revision as of 08:09, 5 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==		==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==
	<StructureSection load='3fnd' size='340' side='right' caption='[[3fnd]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3fnd' size='340' side='right' caption='[[3fnd]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://pdbe.org/3fnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://pdbe.org/3fnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fnd ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/3fnd_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/3fnd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 10:26, 8 February 2016

OCA — Mon, 08 Feb 2016 10:26:48 GMT

←Older revision		Revision as of 10:26, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3fnd' size='340' side='right' caption='[[3fnd]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3fnd' size='340' side='right' caption='[[3fnd]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacteroides_thetaiotaomicron Bacteroides~~ thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FND FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FND FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 ~~Bacteroides~~ thetaiotaomicron])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://pdbe.org/3fnd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fnd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacteroides~~ thetaiotaomicron]]	+	[[Category: Bacillus thetaiotaomicron distaso 1912]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Damodharan, L]]		[[Category: Damodharan, L]]

OCA at 13:06, 6 November 2014

OCA — Thu, 06 Nov 2014 13:06:43 GMT

←Older revision		Revision as of 13:06, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FND FirstGlance]. <br>		<table><tr><td colspan='2'>[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FND FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 Bacteroides thetaiotaomicron])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 Bacteroides thetaiotaomicron])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Bacteroides thetaiotaomicron]]		[[Category: Bacteroides thetaiotaomicron]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Damodharan, L.]]	+	[[Category: Damodharan, L]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Swaminathan, S~~.]]~~	+	[[Category: Swaminathan, S]]
-	~~[[Category: 11092m~~]]	+
	[[Category: Chitinase]]		[[Category: Chitinase]]
	[[Category: Glycosidase]]		[[Category: Glycosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+	[[Category: PSI, Protein structure initiative]]
-	[[Category: Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Tim-barrel]]		[[Category: Tim-barrel]]

OCA at 11:23, 29 September 2014

OCA — Mon, 29 Sep 2014 11:23:18 GMT

←Older revision		Revision as of 11:23, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3fnd.png\|left\|200px]]~~	+	==Crystal structure of a chitinase from Bacteroides thetaiotaomicron==
-		+	<StructureSection load='3fnd' size='340' side='right' caption='[[3fnd]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{STRUCTURE_3fnd\| PDB=3fnd \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FND FirstGlance]. <br>
-	===Crystal structure of a chitinase from Bacteroides thetaiotaomicron===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3co4\|3co4]]</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_2825 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 Bacteroides thetaiotaomicron])</td></tr>
-	[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fnd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fnd RCSB], [http://www.ebi.ac.uk/pdbsum/3fnd PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3fnd TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/3fnd_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Chitinase\|Chitinase]]		*[[Chitinase\|Chitinase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacteroides thetaiotaomicron]]		[[Category: Bacteroides thetaiotaomicron]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA at 09:51, 20 October 2012

OCA — Sat, 20 Oct 2012 09:51:38 GMT

←Older revision		Revision as of 09:51, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3fnd]] is a 1 chain structure ~~of [[Chitinase]]~~ with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA].	+	[[3fnd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA].

	==See Also==		==See Also==

OCA: Protected "3fnd" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 00:11:04 GMT

Protected "3fnd" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:11, 26 July 2012

OCA at 00:11, 26 July 2012

OCA — Thu, 26 Jul 2012 00:11:02 GMT

←Older revision		Revision as of 00:11, 26 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3fnd.png\|left\|200px]]
-	[[Image:3fnd.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3fnd", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3fnd\| PDB=3fnd \| SCENE= }}		{{STRUCTURE_3fnd\| PDB=3fnd \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3FND~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA].	+	[[3fnd]] is a 1 chain structure of [[Chitinase]] with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA].
		+
		+	==See Also==
		+	*[[Chitinase\|Chitinase]]
	[[Category: Bacteroides thetaiotaomicron]]		[[Category: Bacteroides thetaiotaomicron]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
Line 30:		Line 26:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Tim-barrel]]		[[Category: Tim-barrel]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 11 12:43:57 2009''

OCA at 10:43, 11 February 2009

OCA — Wed, 11 Feb 2009 10:43:58 GMT

←Older revision		Revision as of 10:43, 11 February 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3fnd.jpg\|left\|200px]]

-	The ~~entry 3fnd~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3fnd", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3fnd\| PDB=3fnd \| SCENE= }}

-	~~Authors: Damodharan, L., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)~~	+	===Crystal structure of a chitinase from Bacteroides thetaiotaomicron===

-	Description: Crystal structure of a chitinase from Bacteroides thetaiotaomicron

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 14~~ 12:54:53 2009''	+	==About this Structure==
		+	3FND is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FND OCA].
		+	[[Category: Bacteroides thetaiotaomicron]]
		+	[[Category: Burley, S K.]]
		+	[[Category: Damodharan, L.]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
		+	[[Category: Swaminathan, S.]]
		+	[[Category: 11092m]]
		+	[[Category: Chitinase]]
		+	[[Category: Glycosidase]]
		+	[[Category: Hydrolase]]
		+	[[Category: New york sgx research center for structural genomic]]
		+	[[Category: Nysgxrc]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]
		+	[[Category: Tim-barrel]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 11 12:43:57 2009''