3foh - Revision history

OCA at 09:50, 21 February 2024

OCA — Wed, 21 Feb 2024 09:50:09 GMT

←Older revision		Revision as of 09:50, 21 February 2024
Line 3:		Line 3:
	<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>		<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpt4 Bpt4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FOH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 15Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">18, GB AAA32541 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=10665 BPT4])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [https://pdbe.org/3foh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [https://www.ebi.ac.uk/pdbsum/3foh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [https://pdbe.org/3foh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [https://www.ebi.ac.uk/pdbsum/3foh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~VG18_BPT4 VG18_BPT4~~]~~] The contractile tail~~ of bacteriophage T4 consists of a contractile sheath, a tube and a baseplate. ~~144 protomers~~ of ~~Gp18~~, ~~arranged in 24 annuli~~, ~~form~~ the contractile ~~tail~~ sheath ~~which participates in viral~~ DNA ~~injection~~ into host ~~cytoplasm~~.	+	[https://www.uniprot.org/uniprot/TSP_BPT4 TSP_BPT4] Structural component of the bacteriophage tail which consists of a contractile sheath, a tube and a baseplate. The central cylindrical segment of the tail consists of a rigid tube, composed of multiple copies of gp19, surrounded by the outer contractile sheath assembled from gp18 subunits. A total of 138 copies of gp18 arranged into 23 hexameric rings constitutes the sheath. During infection, contraction of the sheath drives the central tube through the host outer membrane, creating a channel for DNA ejection from the capsid into the host cell.<ref>PMID:14625682</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3foh ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3foh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The contractile tail of bacteriophage T4 is a molecular machine that facilitates very high viral infection efficiency. Its major component is a tail sheath, which contracts during infection to less than half of its initial length. The sheath consists of 138 copies of the tail sheath protein, gene product (gp) 18, which surrounds the central non-contractile tail tube. The contraction of the sheath drives the tail tube through the outer membrane, creating a channel for the viral genome delivery. A crystal structure of about three quarters of gp18 has been determined and was fitted into cryo-electron microscopy reconstructions of the tail sheath before and after contraction. It was shown that during contraction, gp18 subunits slide over each other with no apparent change in their structure.
-
-	The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria.,Aksyuk AA, Leiman PG, Kurochkina LP, Shneider MM, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG EMBO J. 2009 Apr 8;28(7):821-9. Epub 2009 Feb 19. PMID:19229296<ref>PMID:19229296</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3foh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: ~~Bpt4~~]]	+	[[Category: Escherichia virus T4]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Aksyuk~~, A A~~]]	+	[[Category: Aksyuk AA]]
-	[[Category: Kostyuchenko~~, V A~~]]	+	[[Category: Kostyuchenko VA]]
-	[[Category: Kurochkina~~, L P~~]]	+	[[Category: Kurochkina LP]]
-	[[Category: Leiman~~, P G~~]]	+	[[Category: Leiman PG]]
-	[[Category: Mesyanzhinov~~, V V~~]]	+	[[Category: Mesyanzhinov VV]]
-	[[Category: Rossmann~~, M G~~]]	+	[[Category: Rossmann MG]]
-	[[Category: Shneider~~, M M]]~~	+	[[Category: Shneider MM]]
-	~~[[Category: Alpha-beta]]~~	+
-	~~[[Category: Bacteriophage t4]]~~	+
-	~~[[Category: Tail sheath]]~~	+
-	~~[[Category: Viral protein]]~~	+
-	~~[[Category: Viral structural protein~~]]	+

OCA at 19:57, 20 October 2021

OCA — Wed, 20 Oct 2021 19:57:06 GMT

←Older revision		Revision as of 19:57, 20 October 2021
Line 3:		Line 3:
	<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>		<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3FOH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [~~http~~://pdbe.org/3foh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3foh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [https://pdbe.org/3foh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [https://www.ebi.ac.uk/pdbsum/3foh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/VG18_BPT4 VG18_BPT4]] The contractile tail of bacteriophage T4 consists of a contractile sheath, a tube and a baseplate. 144 protomers of Gp18, arranged in 24 annuli, form the contractile tail sheath which participates in viral DNA injection into host cytoplasm.	+	[[https://www.uniprot.org/uniprot/VG18_BPT4 VG18_BPT4]] The contractile tail of bacteriophage T4 consists of a contractile sheath, a tube and a baseplate. 144 protomers of Gp18, arranged in 24 annuli, form the contractile tail sheath which participates in viral DNA injection into host cytoplasm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 17:21, 10 April 2020

OCA — Fri, 10 Apr 2020 17:21:16 GMT

←Older revision		Revision as of 17:21, 10 April 2020
Line 3:		Line 3:
	<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>		<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3FOH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://pdbe.org/3foh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://pdbe.org/3foh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 17:08, 6 March 2020

OCA — Fri, 06 Mar 2020 17:08:04 GMT

←Older revision		Revision as of 17:08, 6 March 2020
Line 1:		Line 1:

	==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==		==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==
-	<~~StructureSection~~ load='3foh' size='340' side='right'caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>	+	<SX load='3foh' size='340' side='right' viewer='molstar' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>		<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
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	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Bpt4]]		[[Category: Bpt4]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 07:09, 6 November 2019

OCA — Wed, 06 Nov 2019 07:09:26 GMT

←Older revision		Revision as of 07:09, 6 November 2019
Line 1:		Line 1:

	==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==		==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==
-	<StructureSection load='3foh' size='340' side='right' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>	+	<StructureSection load='3foh' size='340' side='right'caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>		<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Bpt4]]		[[Category: Bpt4]]
		+	[[Category: Large Structures]]
	[[Category: Aksyuk, A A]]		[[Category: Aksyuk, A A]]
	[[Category: Kostyuchenko, V A]]		[[Category: Kostyuchenko, V A]]

OCA at 07:58, 18 July 2018

OCA — Wed, 18 Jul 2018 07:58:29 GMT

←Older revision		Revision as of 07:58, 18 July 2018
Line 1:		Line 1:
		+
	==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==		==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==
	<StructureSection load='3foh' size='340' side='right' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>		<StructureSection load='3foh' size='340' side='right' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://pdbe.org/3foh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://pdbe.org/3foh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3foh ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fo/3foh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fo/3foh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:27, 9 February 2016

OCA — Tue, 09 Feb 2016 19:27:22 GMT

←Older revision		Revision as of 19:27, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3foh' size='340' side='right' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>		<StructureSection load='3foh' size='340' side='right' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_t4 Enterobacteria phage t4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 ~~Enterobacteria phage T4~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://pdbe.org/3foh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3foh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3foh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage t4~~]]	+	[[Category: Bpt4]]
	[[Category: Aksyuk, A A]]		[[Category: Aksyuk, A A]]
	[[Category: Kostyuchenko, V A]]		[[Category: Kostyuchenko, V A]]

OCA at 09:01, 25 December 2014

OCA — Thu, 25 Dec 2014 09:01:48 GMT

←Older revision		Revision as of 09:01, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>		<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 Enterobacteria phage T4])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 Enterobacteria phage T4])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/VG18_BPT4 VG18_BPT4]] The contractile tail of bacteriophage T4 consists of a contractile sheath, a tube and a baseplate. 144 protomers of Gp18, arranged in 24 annuli, form the contractile tail sheath which participates in viral DNA injection into host cytoplasm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 25:
	The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria.,Aksyuk AA, Leiman PG, Kurochkina LP, Shneider MM, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG EMBO J. 2009 Apr 8;28(7):821-9. Epub 2009 Feb 19. PMID:19229296<ref>PMID:19229296</ref>		The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria.,Aksyuk AA, Leiman PG, Kurochkina LP, Shneider MM, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG EMBO J. 2009 Apr 8;28(7):821-9. Epub 2009 Feb 19. PMID:19229296<ref>PMID:19229296</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage t4]]		[[Category: Enterobacteria phage t4]]
-	[[Category: Aksyuk, A A.]]	+	[[Category: Aksyuk, A A]]
-	[[Category: Kostyuchenko, V A.]]	+	[[Category: Kostyuchenko, V A]]
-	[[Category: Kurochkina, L P.]]	+	[[Category: Kurochkina, L P]]
-	[[Category: Leiman, P G.]]	+	[[Category: Leiman, P G]]
-	[[Category: Mesyanzhinov, V V.]]	+	[[Category: Mesyanzhinov, V V]]
-	[[Category: Rossmann, M G.]]	+	[[Category: Rossmann, M G]]
-	[[Category: Shneider, M M.]]	+	[[Category: Shneider, M M]]
	[[Category: Alpha-beta]]		[[Category: Alpha-beta]]
	[[Category: Bacteriophage t4]]		[[Category: Bacteriophage t4]]

OCA at 09:49, 21 May 2014

OCA — Wed, 21 May 2014 09:49:01 GMT

←Older revision		Revision as of 09:49, 21 May 2014
Line 1:		Line 1:
-	[[~~Image:~~3foh.~~png~~\|~~left~~\|200px]]	+	==Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail==
		+	<StructureSection load='3foh' size='340' side='right' caption='[[3foh]], [[Resolution\|resolution]] 15.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3foh]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FOH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3foa\|3foa]], [[3fo8\|3fo8]], [[3foi\|3foi]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">18, GB AAA32541 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 Enterobacteria phage T4])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3foh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3foh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3foh RCSB], [http://www.ebi.ac.uk/pdbsum/3foh PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fo/3foh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The contractile tail of bacteriophage T4 is a molecular machine that facilitates very high viral infection efficiency. Its major component is a tail sheath, which contracts during infection to less than half of its initial length. The sheath consists of 138 copies of the tail sheath protein, gene product (gp) 18, which surrounds the central non-contractile tail tube. The contraction of the sheath drives the tail tube through the outer membrane, creating a channel for the viral genome delivery. A crystal structure of about three quarters of gp18 has been determined and was fitted into cryo-electron microscopy reconstructions of the tail sheath before and after contraction. It was shown that during contraction, gp18 subunits slide over each other with no apparent change in their structure.

-	~~<!--~~	+	The tail sheath structure of bacteriophage T4: a molecular machine for infecting bacteria.,Aksyuk AA, Leiman PG, Kurochkina LP, Shneider MM, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG EMBO J. 2009 Apr 8;28(7):821-9. Epub 2009 Feb 19. PMID:19229296<ref>PMID:19229296</ref>
-	The ~~line below this paragraph~~, ~~containing "STRUCTURE_3foh"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display.~~	+
-	-->	+
-	~~{{STRUCTURE_3foh\| PDB=3foh \| SCENE= }}~~	+

-	~~===Fitting~~ of ~~gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_19229296}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 19229296 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_19229296}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3foh]] is a 6 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FOH OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019229296<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Enterobacteria phage t4]]		[[Category: Enterobacteria phage t4]]
	[[Category: Aksyuk, A A.]]		[[Category: Aksyuk, A A.]]

OCA: Protected "3foh" [edit=sysop:move=sysop]

OCA — Wed, 30 May 2012 04:55:24 GMT

Protected "3foh" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:55, 30 May 2012