3gk7 - Revision history

OCA at 15:41, 1 November 2023

OCA — Wed, 01 Nov 2023 15:41:14 GMT

←Older revision		Revision as of 15:41, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3gk7' size='340' side='right'caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3gk7' size='340' side='right'caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"clostridium_aminobutyricum"_hardman_and_stadtman "clostridium~~ aminobutyricum~~" hardman and stadtman~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_aminobutyricum Clostridium aminobutyricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>~~, ~~<scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-~~1~~,3-DIOL'>TRS</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2oas\|2oas]], [[3d3u\|3d3u]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">abfT ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 "Clostridium aminobutyricum" Hardman and Stadtman])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [https://pdbe.org/3gk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3gk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gk7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [https://pdbe.org/3gk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3gk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gk7 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9RM86_CLOAM Q9RM86_CLOAM]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium aminobutyricum ~~hardman and stadtman~~]]	+	[[Category: Clostridium aminobutyricum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Macieira, S]]	+	[[Category: Macieira S]]
-	[[Category: Messerschmidt, A]]	+	[[Category: Messerschmidt A]]
-	[[Category: Velarde, M]]	+	[[Category: Velarde M]]
-	~~[[Category: Alpha/beta protein]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 08:07, 9 March 2022

OCA — Wed, 09 Mar 2022 08:07:16 GMT

←Older revision		Revision as of 08:07, 9 March 2022
Line 1:		Line 1:

	==Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum==		==Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum==
-	<StructureSection load='3gk7' size='340' side='right' caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='3gk7' size='340' side='right'caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"clostridium_aminobutyricum"_hardman_and_stadtman "clostridium aminobutyricum" hardman and stadtman]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"clostridium_aminobutyricum"_hardman_and_stadtman "clostridium aminobutyricum" hardman and stadtman]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2oas\|2oas]], [[3d3u\|3d3u]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2oas\|2oas]], [[3d3u\|3d3u]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 "Clostridium aminobutyricum" Hardman and Stadtman])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 "Clostridium aminobutyricum" Hardman and Stadtman])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [~~http~~://pdbe.org/3gk7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gk7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gk7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [https://pdbe.org/3gk7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [https://www.ebi.ac.uk/pdbsum/3gk7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gk7 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium aminobutyricum hardman and stadtman]]		[[Category: Clostridium aminobutyricum hardman and stadtman]]
		+	[[Category: Large Structures]]
	[[Category: Macieira, S]]		[[Category: Macieira, S]]
	[[Category: Messerschmidt, A]]		[[Category: Messerschmidt, A]]

OCA at 06:02, 7 December 2018

OCA — Fri, 07 Dec 2018 06:02:42 GMT

←Older revision		Revision as of 06:02, 7 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum==		==Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum==
	<StructureSection load='3gk7' size='340' side='right' caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3gk7' size='340' side='right' caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2oas\|2oas]], [[3d3u\|3d3u]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2oas\|2oas]], [[3d3u\|3d3u]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 "Clostridium aminobutyricum" Hardman and Stadtman])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 "Clostridium aminobutyricum" Hardman and Stadtman])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [http://pdbe.org/3gk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3gk7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [http://pdbe.org/3gk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3gk7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gk7 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/3gk7_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/3gk7_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:47, 7 February 2016

OCA — Sun, 07 Feb 2016 05:47:56 GMT

←Older revision		Revision as of 05:47, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3gk7' size='340' side='right' caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='3gk7' size='340' side='right' caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_aminobutyricum Clostridium~~ aminobutyricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"clostridium_aminobutyricum"_hardman_and_stadtman "clostridium aminobutyricum" hardman and stadtman]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2oas\|2oas]], [[3d3u\|3d3u]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2oas\|2oas]], [[3d3u\|3d3u]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 Clostridium aminobutyricum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 "Clostridium aminobutyricum" Hardman and Stadtman])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3gk7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [http://pdbe.org/3gk7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3gk7 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gk7 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3gk7" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium aminobutyricum]]	+	[[Category: Clostridium aminobutyricum hardman and stadtman]]
	[[Category: Macieira, S]]		[[Category: Macieira, S]]
	[[Category: Messerschmidt, A]]		[[Category: Messerschmidt, A]]

OCA at 09:38, 8 December 2014

OCA — Mon, 08 Dec 2014 09:38:13 GMT

←Older revision		Revision as of 09:38, 8 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3gk7.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum==
		+	<StructureSection load='3gk7' size='340' side='right' caption='[[3gk7]], [[Resolution\|resolution]] 1.85Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3gk7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_aminobutyricum Clostridium aminobutyricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GK7 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2oas\|2oas]], [[3d3u\|3d3u]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">abfT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33953 Clostridium aminobutyricum])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gk7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3gk7 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/3gk7_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	4-Hydroxybutyrate CoA-transferases (4-HB-CoAT) takes part in the fermentation of 4-aminobutyrate to ammonia, acetate, and butyrate in anaerobic bacteria such as Clostridium aminobutyricum and Porphyromonas gingivalis or facultative anaerobic bacteria such as Shewanella oneidensis. Site-directed mutagenesis of the highly active enzyme has identified the catalytic glutamate residue as E238. Crystal structure of this enzyme has been determined at a resolution of 1.85 A. The 438-amino acid residue polypeptide chain folds into two topologically similar domains with an open alpha/beta-fold, which is also found in other CoAT family I and family II members. The data indicate that the members of CoAT families I and II are closely related; the latter only lacking the catalytic glutamate residue. A putative co-substrate binding site for the 4-HB-CoAT was identified, in which a 4-hydroxybutyrate molecule has been modeled. This site is also responsible for binding the acetyl group of acetyl-CoA or the succinyl group of succinyl-CoA in succinyl-CoA:3-oxoacid CoA-transferase from mammalian mitochondria. Mutations of relevant active site amino acid residues have been produced and their activities tested to corroborate the proposed structural model for substrate binding. 4-HB-CoAT from C. aminobutyricum represents the only functionally characterized 4-HB-CoAT present in the structural database.

-	~~{{STRUCTURE_3gk7\| PDB=3gk7 \| SCENE= }}~~	+	Crystal structure of 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum.,Macieira S, Zhang J, Velarde M, Buckel W, Messerschmidt A Biol Chem. 2009 Dec;390(12):1251-63. PMID:19804364<ref>PMID:19804364</ref>

-	~~===Crystal structure~~ of ~~4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19804364}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3gk7]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Clostridium_aminobutyricum Clostridium aminobutyricum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019804364<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Clostridium aminobutyricum]]		[[Category: Clostridium aminobutyricum]]
-	[[Category: Macieira, S.]]	+	[[Category: Macieira, S]]
-	[[Category: Messerschmidt, A.]]	+	[[Category: Messerschmidt, A]]
-	[[Category: Velarde, M.]]	+	[[Category: Velarde, M]]
	[[Category: Alpha/beta protein]]		[[Category: Alpha/beta protein]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA: Protected "3gk7" [edit=sysop:move=sysop]

OCA — Wed, 27 Feb 2013 15:41:35 GMT

Protected "3gk7" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:41, 27 February 2013

OCA at 15:41, 27 February 2013

OCA — Wed, 27 Feb 2013 15:41:31 GMT

←Older revision		Revision as of 15:41, 27 February 2013
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-	~~{{Seed}}~~	+	[[Image:3gk7.png\|left\|200px]]
-	[[Image:3gk7.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gk7", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3gk7\| PDB=3gk7 \| SCENE= }}		{{STRUCTURE_3gk7\| PDB=3gk7 \| SCENE= }}

	===Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum===		===Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19804364}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19804364 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19804364}}		{{ABSTRACT_PUBMED_19804364}}

	==About this Structure==		==About this Structure==
-	~~3GK7~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Clostridium_aminobutyricum Clostridium aminobutyricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA].	+	[[3gk7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_aminobutyricum Clostridium aminobutyricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19804364~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019804364</ref><references group="xtra"/>
	[[Category: Clostridium aminobutyricum]]		[[Category: Clostridium aminobutyricum]]
	[[Category: Macieira, S.]]		[[Category: Macieira, S.]]
Line 30:		Line 18:
	[[Category: Alpha/beta protein]]		[[Category: Alpha/beta protein]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Dec 24 07:36:52 2009''

OCA at 05:36, 24 December 2009

OCA — Thu, 24 Dec 2009 05:36:52 GMT

←Older revision		Revision as of 05:36, 24 December 2009
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	===Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum===		===Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19804364}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19804364 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19804364}}

	==About this Structure==		==About this Structure==
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	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed~~ Dec ~~23 09~~:55:49 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Dec 24 07:36:52 2009''

OCA at 07:55, 23 December 2009

OCA — Wed, 23 Dec 2009 07:55:50 GMT

←Older revision		Revision as of 07:55, 23 December 2009
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-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3gk7.jpg\|left\|200px]]

-	The ~~entry 3gk7~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3gk7", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3gk7\| PDB=3gk7 \| SCENE= }}

-	~~Authors: Messerschmidt, A., Macieira, S., Velarde, M.~~	+	===Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum===

-	Description: Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Sep 3 15~~:18:27 2009''	+	==About this Structure==
		+	3GK7 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Clostridium_aminobutyricum Clostridium aminobutyricum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GK7 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19804364</ref><references group="xtra"/>
		+	[[Category: Clostridium aminobutyricum]]
		+	[[Category: Macieira, S.]]
		+	[[Category: Messerschmidt, A.]]
		+	[[Category: Velarde, M.]]
		+	[[Category: Alpha/beta protein]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 23 09:55:49 2009''

OCA at 12:18, 3 September 2009

OCA — Thu, 03 Sep 2009 12:18:28 GMT

←Older revision		Revision as of 12:18, 3 September 2009
Line 3:		Line 3:
	The entry 3gk7 is ON HOLD until Paper Publication		The entry 3gk7 is ON HOLD until Paper Publication

-	Authors: Macieira, S., Velarde, M~~., Zhang, J., Buckel, W., Messerschmidt, A~~.	+	Authors: Messerschmidt, A., Macieira, S., Velarde, M.

	Description: Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum		Description: Crystal structure of 4-hydroxybutyrate CoA-Transferase from Clostridium aminobutyricum

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Mar 25 12~~:16:36 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 15:18:27 2009''