3gkq - Revision history

OCA at 08:26, 20 March 2024

OCA — Wed, 20 Mar 2024 08:26:25 GMT

←Older revision		Revision as of 08:26, 20 March 2024
Line 3:		Line 3:
	<StructureSection load='3gkq' size='340' side='right'caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3gkq' size='340' side='right'caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Novk1 Novk1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_sp._KA1 Novosphingobium sp. KA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>~~, ~~<scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~carAaII~~ (~~[https:~~/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=164608 NOVK1]~~)</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [https://pdbe.org/3gkq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [https://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [https://pdbe.org/3gkq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [https://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q2PFA6_NOVK1 Q2PFA6_NOVK1]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Novk1~~]]	+	[[Category: Novosphingobium sp. KA1]]
-	[[Category: Nojiri, H]]	+	[[Category: Nojiri H]]
-	[[Category: Umeda, T]]	+	[[Category: Umeda T]]
-	~~[[Category: Dioxygenase]]~~	+
-	~~[[Category: Electron transfer]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Putidaredoxin-type ferredoxin]]~~	+
-	~~[[Category: Rieske nonheme iron oxygenase~~]]	+

OCA at 08:07, 9 March 2022

OCA — Wed, 09 Mar 2022 08:07:29 GMT

←Older revision		Revision as of 08:07, 9 March 2022
Line 1:		Line 1:

	==Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1==		==Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1==
-	<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3gkq' size='340' side='right'caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Novk1 Novk1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Novk1 Novk1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 NOVK1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 NOVK1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [~~http~~://pdbe.org/3gkq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [https://pdbe.org/3gkq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [https://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:

	==See Also==		==See Also==
-	*[[Dioxygenase\|Dioxygenase]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Novk1]]		[[Category: Novk1]]
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]

OCA at 05:37, 7 December 2018

OCA — Fri, 07 Dec 2018 05:37:02 GMT

←Older revision		Revision as of 05:37, 7 December 2018
Line 3:		Line 3:
	<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sphingomonas_sp._ka1 Sphingomonas sp. ka1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Novk1 Novk1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 ~~Sphingomonas sp. KA1~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 NOVK1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://pdbe.org/3gkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://pdbe.org/3gkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>
	</table>		</table>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/3gkq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/3gkq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sphingomonas sp. ka1~~]]	+	[[Category: Novk1]]
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]
	[[Category: Umeda, T]]		[[Category: Umeda, T]]

OCA at 17:33, 18 January 2017

OCA — Wed, 18 Jan 2017 17:33:49 GMT

←Older revision		Revision as of 17:33, 18 January 2017
Line 1:		Line 1:
		+
	==Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1==		==Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1==
	<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 Sphingomonas sp. KA1])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 Sphingomonas sp. KA1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://pdbe.org/3gkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gkq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gkq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 05:45, 8 April 2015

OCA — Wed, 08 Apr 2015 05:45:26 GMT

←Older revision		Revision as of 05:45, 8 April 2015
Line 2:		Line 2:
	<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas ~~Sphingomonas~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas_sp._ka1 Sphingomonas sp. ka1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~13687~~ Sphingomonas])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=164608 Sphingomonas sp. KA1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum]</span></td></tr>
	</table>		</table>
Line 17:		Line 17:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Dioxygenase\|Dioxygenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Sphingomonas]]	+	[[Category: Sphingomonas sp. ka1]]
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]
	[[Category: Umeda, T]]		[[Category: Umeda, T]]

OCA at 09:12, 8 December 2014

OCA — Mon, 08 Dec 2014 09:12:16 GMT

←Older revision		Revision as of 09:12, 8 December 2014
Line 1:		Line 1:
-	~~[[Image:3gkq.png\|left\|200px]]~~	+	==Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1==
-		+	<StructureSection load='3gkq' size='340' side='right' caption='[[3gkq]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{STRUCTURE_3gkq\| PDB=3gkq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas Sphingomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GKQ FirstGlance]. <br>
-	===Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">carAaII ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=13687 Sphingomonas])</td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gkq RCSB], [http://www.ebi.ac.uk/pdbsum/3gkq PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	</table>
-	[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas Sphingomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/3gkq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Sphingomonas]]		[[Category: Sphingomonas]]
-	[[Category: Nojiri, H.]]	+	[[Category: Nojiri, H]]
-	[[Category: Umeda, T.]]	+	[[Category: Umeda, T]]
	[[Category: Dioxygenase]]		[[Category: Dioxygenase]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]

OCA: Protected "3gkq" [edit=sysop:move=sysop]

OCA — Wed, 27 Feb 2013 15:46:17 GMT

Protected "3gkq" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:46, 27 February 2013

OCA at 15:46, 27 February 2013

OCA — Wed, 27 Feb 2013 15:46:12 GMT

←Older revision		Revision as of 15:46, 27 February 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3gkq.png\|left\|200px]]
-	[[Image:3gkq.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gkq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3gkq\| PDB=3gkq \| SCENE= }}		{{STRUCTURE_3gkq\| PDB=3gkq \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3GKQ~~ is a 6 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Sphingomonas Sphingomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA].	+	[[3gkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingomonas Sphingomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA].
	[[Category: Sphingomonas]]		[[Category: Sphingomonas]]
	[[Category: Nojiri, H.]]		[[Category: Nojiri, H.]]
Line 21:		Line 14:
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Plasmid]]
	[[Category: Putidaredoxin-type ferredoxin]]		[[Category: Putidaredoxin-type ferredoxin]]
	[[Category: Rieske nonheme iron oxygenase]]		[[Category: Rieske nonheme iron oxygenase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:48:24 2010''

OCA at 10:48, 31 March 2010

OCA — Wed, 31 Mar 2010 10:48:24 GMT

←Older revision		Revision as of 10:48, 31 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3gkq.jpg\|left\|200px]]

-	The ~~entry 3gkq~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3gkq", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3gkq\| PDB=3gkq \| SCENE= }}

-	~~Authors: Umeda~~, ~~T., Nojiri, H~~.	+	===Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1===

-	Description: Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Sep 3 15~~:18:~~30 2009~~''	+	==About this Structure==
		+	3GKQ is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Sphingomonas Sphingomonas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GKQ OCA].
		+	[[Category: Sphingomonas]]
		+	[[Category: Nojiri, H.]]
		+	[[Category: Umeda, T.]]
		+	[[Category: Dioxygenase]]
		+	[[Category: Electron transfer]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Plasmid]]
		+	[[Category: Putidaredoxin-type ferredoxin]]
		+	[[Category: Rieske nonheme iron oxygenase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:48:24 2010''

OCA at 12:18, 3 September 2009

OCA — Thu, 03 Sep 2009 12:18:30 GMT

←Older revision		Revision as of 12:18, 3 September 2009
Line 3:		Line 3:
	The entry 3gkq is ON HOLD until Paper Publication		The entry 3gkq is ON HOLD until Paper Publication

-	Authors: Umeda, T~~., Katsuki, J., Ashikawa, Y, Inoue, K., Usami, Y., Noguchi, H, Terada, T., Abo, M., Fujimoto, Z, Yamane, H~~., Nojiri, H.	+	Authors: Umeda, T., Nojiri, H.

	Description: Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1		Description: Terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Apr~~ 15 09:54:30 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 15:18:30 2009''