3go5 - Revision history

OCA at 11:39, 1 February 2023

OCA — Wed, 01 Feb 2023 11:39:18 GMT

←Older revision		Revision as of 11:39, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='3go5' size='340' side='right'caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='3go5' size='340' side='right'caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Strpn Strpn~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [https://pdbe.org/3go5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [https://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3go5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [https://pdbe.org/3go5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [https://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3go5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0H2UPM3_STRPN A0A0H2UPM3_STRPN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Strpn]]~~	+	[[Category: Streptococcus pneumoniae TIGR4]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Gene regulation]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: S1 rna-binding domain~~]]	+

OCA at 07:50, 16 March 2022

OCA — Wed, 16 Mar 2022 07:50:30 GMT

←Older revision		Revision as of 07:50, 16 March 2022
Line 3:		Line 3:
	<StructureSection load='3go5' size='340' side='right'caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='3go5' size='340' side='right'caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [~~http~~://pdbe.org/3go5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3go5 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [https://pdbe.org/3go5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [https://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3go5 ProSAT], [https://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:14, 24 July 2019

OCA — Wed, 24 Jul 2019 08:14:24 GMT

←Older revision		Revision as of 08:14, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution==		==Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution==
-	<StructureSection load='3go5' size='340' side='right' caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>	+	<StructureSection load='3go5' size='340' side='right'caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3go5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3go5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Strpn]]		[[Category: Strpn]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 07:08, 1 November 2017

OCA — Wed, 01 Nov 2017 07:08:50 GMT

←Older revision		Revision as of 07:08, 1 November 2017
Line 1:		Line 1:
		+
	==Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution==		==Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution==
	<StructureSection load='3go5' size='340' side='right' caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='3go5' size='340' side='right' caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [http://pdbe.org/3go5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [http://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [http://pdbe.org/3go5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [http://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3go5 ProSAT], [http://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 20:31, 8 February 2016

OCA — Mon, 08 Feb 2016 20:31:49 GMT

←Older revision		Revision as of 20:31, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3go5' size='340' side='right' caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='3go5' size='340' side='right' caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae Streptococcus pneumoniae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1313 Streptococcus pneumoniae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [http://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [http://pdbe.org/3go5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [http://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3go5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3go5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Streptococcus pneumoniae~~]]	+	[[Category: Strpn]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Gene regulation]]		[[Category: Gene regulation]]

OCA at 09:23, 8 December 2014

OCA — Mon, 08 Dec 2014 09:23:14 GMT

←Older revision		Revision as of 09:23, 8 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3go5.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution==
		+	<StructureSection load='3go5' size='340' side='right' caption='[[3go5]], [[Resolution\|resolution]] 1.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3go5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GO5 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NP_345429.1, SP_0946 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1313 Streptococcus pneumoniae])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3go5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3go5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3go5 RCSB], [http://www.ebi.ac.uk/pdbsum/3go5 PDBsum], [http://www.topsan.org/Proteins/JCSG/3go5 TOPSAN]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3go5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	CvfB is a conserved regulatory protein important for the virulence of Staphylococcus aureus. We show here that CvfB binds RNA. The crystal structure of the CvfB ortholog from Streptococcus pneumoniae at 1.4 A resolution reveals a unique RNA binding protein that is formed from a concatenation of well-known structural modules that bind nucleic acids: three consecutive S1 RNA binding domains and a winged helix (WH) domain. The third S1 and the WH domains are required for cooperative RNA binding and form a continuous surface that likely contributes to the RNA interaction. The WH domain is critical to CvfB function and contains a unique sequence motif. Thus CvfB represents a novel assembly of modules for binding RNA.

-	~~{{STRUCTURE_3go5\| PDB=3go5 \| SCENE= }}~~	+	Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module.,Matsumoto Y, Xu Q, Miyazaki S, Kaito C, Farr CL, Axelrod HL, Chiu HJ, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Sekimizu K, Wilson IA Structure. 2010 Mar 14;18(4):537-47. PMID:20399190<ref>PMID:20399190</ref>

-	~~===Crystal structure~~ of ~~a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1~~.~~40 A resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20399190}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3go5]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:020399190<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Gene regulation]]		[[Category: Gene regulation]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: ~~Joint center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: S1 rna-binding domain]]		[[Category: S1 rna-binding domain]]
-	[[Category: Structural genomic]]

OCA at 15:21, 27 February 2013

OCA — Wed, 27 Feb 2013 15:21:54 GMT

←Older revision		Revision as of 15:21, 27 February 2013
Line 1:		Line 1:
	[[Image:3go5.png\|left\|200px]]		[[Image:3go5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3go5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3go5\| PDB=3go5 \| SCENE= }}		{{STRUCTURE_3go5\| PDB=3go5 \| SCENE= }}

	===Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution===		===Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20399190}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20399190 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20399190}}		{{ABSTRACT_PUBMED_20399190}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20399190~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020399190</ref><references group="xtra"/>
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Gene regulation]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: S1 rna-binding domain]]
		+	[[Category: Structural genomic]]

OCA: Protected "3go5" [edit=sysop:move=sysop]

OCA — Wed, 23 Mar 2011 05:52:18 GMT

Protected "3go5" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:52, 23 March 2011

OCA at 05:52, 23 March 2011

OCA — Wed, 23 Mar 2011 05:52:16 GMT

←Older revision		Revision as of 05:52, 23 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3go5.png\|left\|200px]]		[[Image:3go5.png\|left\|200px]]

Line 10:		Line 9:
	{{STRUCTURE_3go5\| PDB=3go5 \| SCENE= }}		{{STRUCTURE_3go5\| PDB=3go5 \| SCENE= }}

-	===Crystal structure of multidomain protein with ~~S1 RNA-~~binding domains (~~NP_345429.1~~) from ~~Streptococcus~~ pneumoniae ~~TIGR4~~ at 1.40 A resolution===	+	===Crystal structure of a multidomain protein with nucleic acid binding domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 A resolution===


Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~3GO5~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae_tigr4~~ Streptococcus pneumoniae ~~tigr4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA].	+	[[3go5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:20399190</ref><references group="xtra"/>		<ref group="xtra">PMID:20399190</ref><references group="xtra"/>
-	[[Category: Streptococcus pneumoniae ~~tigr4~~]]	+	[[Category: Streptococcus pneumoniae]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Multidomain protein with s1 rna-binding domain]]
-	[[Category: Np_345429 1]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi-2]]
-	[[Category: Structural genomic]]
-	[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 5 11:21:48 2010''

OCA at 08:21, 5 May 2010

OCA — Wed, 05 May 2010 08:21:48 GMT

←Older revision		Revision as of 08:21, 5 May 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3go5.~~jpg~~\|left\|200px]]	+	[[Image:3go5.png\|left\|200px]]

	<!--		<!--
Line 12:		Line 12:
	===Crystal structure of multidomain protein with S1 RNA-binding domains (NP_345429.1) from Streptococcus pneumoniae TIGR4 at 1.40 A resolution===		===Crystal structure of multidomain protein with S1 RNA-binding domains (NP_345429.1) from Streptococcus pneumoniae TIGR4 at 1.40 A resolution===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20399190}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20399190 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20399190}}

	==About this Structure==		==About this Structure==
-	3GO5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA].	+	3GO5 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GO5 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20399190</ref><references group="xtra"/>
	[[Category: Streptococcus pneumoniae tigr4]]		[[Category: Streptococcus pneumoniae tigr4]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
Line 26:		Line 35:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Apr~~ ~~9 12~~:31:~~13 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 5 11:21:48 2010''