3goq - Revision history

OCA at 07:09, 6 September 2023

OCA — Wed, 06 Sep 2023 07:09:08 GMT

←Older revision		Revision as of 07:09, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3goq' size='340' side='right'caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3goq' size='340' side='right'caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>BSU10130, hemF, hemH ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1423~~ "~~Vibrio subtilis~~" ~~Ehrenberg 1835])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [https://pdbe.org/3goq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [https://www.ebi.ac.uk/pdbsum/3goq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [https://pdbe.org/3goq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [https://www.ebi.ac.uk/pdbsum/3goq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~HEMH_BACSU HEMH_BACSU]~~] Catalyzes the ~~ferrous~~ insertion into protoporphyrin IX.	+	[https://www.uniprot.org/uniprot/CPFC_BACSU CPFC_BACSU] Involved in coproporphyrin-dependent heme b biosynthesis (PubMed:25646457, PubMed:25908396). Catalyzes the insertion of ferrous iron into coproporphyrin III to form Fe-coproporphyrin III (PubMed:25646457, PubMed:25908396). It can also insert iron into protoporphyrin IX (PubMed:1459957, PubMed:8119288, PubMed:21052751, PubMed:25646457). Has weaker activity with 2,4 disulfonate, deuteroporphyrin and 2,4 hydroxyethyl (PubMed:25646457, PubMed:12761666). In vitro, can also use Zn(2+) or Cu(2+) (PubMed:8119288, PubMed:16140324, PubMed:21052751, PubMed:12761666).<ref>PMID:12761666</ref> <ref>PMID:1459957</ref> <ref>PMID:16140324</ref> <ref>PMID:21052751</ref> <ref>PMID:25646457</ref> <ref>PMID:25826316</ref> <ref>PMID:25908396</ref> <ref>PMID:8119288</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 23:
	==See Also==		==See Also==
	*[[Ferrochelatase 3D structures\|Ferrochelatase 3D structures]]		*[[Ferrochelatase 3D structures\|Ferrochelatase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835]]~~	+	[[Category: Bacillus subtilis]]
-	~~[[Category: Ferrochelatase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Al-Karadaghi, S]]	+	[[Category: Al-Karadaghi S]]
-	[[Category: Hansson, M]]	+	[[Category: Hansson M]]
-	[[Category: Hansson~~, M D~~]]	+	[[Category: Hansson MD]]
-	[[Category: Karlberg, T]]	+	[[Category: Karlberg T]]
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Heme biosynthesis]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Porphyrin biosynthesis~~]]	+

OCA at 20:08, 20 October 2021

OCA — Wed, 20 Oct 2021 20:08:22 GMT

←Older revision		Revision as of 20:08, 20 October 2021
Line 3:		Line 3:
	<StructureSection load='3goq' size='340' side='right'caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3goq' size='340' side='right'caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [~~http~~://pdbe.org/3goq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3goq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [https://pdbe.org/3goq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [https://www.ebi.ac.uk/pdbsum/3goq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/HEMH_BACSU HEMH_BACSU]] Catalyzes the ferrous insertion into protoporphyrin IX.	+	[[https://www.uniprot.org/uniprot/HEMH_BACSU HEMH_BACSU]] Catalyzes the ferrous insertion into protoporphyrin IX.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:14, 24 July 2019

OCA — Wed, 24 Jul 2019 08:14:35 GMT

←Older revision		Revision as of 08:14, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase==		==Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase==
-	<StructureSection load='3goq' size='340' side='right' caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='3goq' size='340' side='right'caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>
Line 21:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3goq ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3goq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Ferrochelatase 3D structures\|Ferrochelatase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Ferrochelatase]]		[[Category: Ferrochelatase]]
		+	[[Category: Large Structures]]
	[[Category: Al-Karadaghi, S]]		[[Category: Al-Karadaghi, S]]
	[[Category: Hansson, M]]		[[Category: Hansson, M]]

OCA at 19:19, 24 January 2018

OCA — Wed, 24 Jan 2018 19:19:18 GMT

←Older revision		Revision as of 19:19, 24 January 2018
Line 3:		Line 3:
	<StructureSection load='3goq' size='340' side='right' caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3goq' size='340' side='right' caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://pdbe.org/3goq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://pdbe.org/3goq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3goq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3goq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3goq ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3goq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Ferrochelatase\|Ferrochelatase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Ferrochelatase]]		[[Category: Ferrochelatase]]
	[[Category: Al-Karadaghi, S]]		[[Category: Al-Karadaghi, S]]
Line 32:		Line 29:
	[[Category: Hansson, M D]]		[[Category: Hansson, M D]]
	[[Category: Karlberg, T]]		[[Category: Karlberg, T]]
		+	[[Category: Cytoplasm]]
	[[Category: Heme biosynthesis]]		[[Category: Heme biosynthesis]]
	[[Category: Iron]]		[[Category: Iron]]

OCA at 16:52, 4 August 2016

OCA — Thu, 04 Aug 2016 16:52:23 GMT

←Older revision		Revision as of 16:52, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase==		==Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase==
	<StructureSection load='3goq' size='340' side='right' caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3goq' size='340' side='right' caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://pdbe.org/3goq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3goq ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3goq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Ferrochelatase]]		[[Category: Ferrochelatase]]
	[[Category: Al-Karadaghi, S]]		[[Category: Al-Karadaghi, S]]

OCA at 11:07, 25 December 2014

OCA — Thu, 25 Dec 2014 11:07:50 GMT

←Older revision		Revision as of 11:07, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HEMH_BACSU HEMH_BACSU]] Catalyzes the ferrous insertion into protoporphyrin IX.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:39, 8 December 2014

OCA — Mon, 08 Dec 2014 08:39:54 GMT

←Older revision		Revision as of 08:39, 8 December 2014
Line 1:		Line 1:
-	~~[[Image:3goq.png\|left\|200px]]~~	+	==Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase==
-		+	<StructureSection load='3goq' size='340' side='right' caption='[[3goq]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_3goq\| PDB=3goq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GOQ FirstGlance]. <br>
-	===Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BSU10130, hemF, hemH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferrochelatase Ferrochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.1 4.99.1.1] </span></td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3goq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3goq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3goq RCSB], [http://www.ebi.ac.uk/pdbsum/3goq PDBsum]</span></td></tr>
-	[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3goq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Ferrochelatase\|Ferrochelatase]]		*[[Ferrochelatase\|Ferrochelatase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Ferrochelatase]]		[[Category: Ferrochelatase]]
-	[[Category: Al-Karadaghi, S.]]	+	[[Category: Al-Karadaghi, S]]
-	[[Category: Hansson, M.]]	+	[[Category: Hansson, M]]
-	[[Category: Hansson, M D.]]	+	[[Category: Hansson, M D]]
	[[Category: Karlberg, T]]		[[Category: Karlberg, T]]
	[[Category: Heme biosynthesis]]		[[Category: Heme biosynthesis]]

OCA: Protected "3goq" [edit=sysop:move=sysop]

OCA — Wed, 27 Feb 2013 15:11:35 GMT

Protected "3goq" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:11, 27 February 2013

OCA at 15:11, 27 February 2013

OCA — Wed, 27 Feb 2013 15:11:28 GMT

←Older revision		Revision as of 15:11, 27 February 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3goq.png\|left\|200px]]
-	[[Image:3goq.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3goq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3goq\| PDB=3goq \| SCENE= }}		{{STRUCTURE_3goq\| PDB=3goq \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3GOQ~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA].	+	[[3goq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA].
		+
		+	==See Also==
		+	*[[Ferrochelatase\|Ferrochelatase]]
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Ferrochelatase]]		[[Category: Ferrochelatase]]
Line 21:		Line 17:
	[[Category: Hansson, M D.]]		[[Category: Hansson, M D.]]
	[[Category: Karlberg, T]]		[[Category: Karlberg, T]]
-	[[Category: Cytoplasm]]
	[[Category: Heme biosynthesis]]		[[Category: Heme biosynthesis]]
	[[Category: Iron]]		[[Category: Iron]]
Line 27:		Line 22:
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Porphyrin biosynthesis]]		[[Category: Porphyrin biosynthesis]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:48:47 2010''

OCA at 10:48, 31 March 2010

OCA — Wed, 31 Mar 2010 10:48:49 GMT

←Older revision		Revision as of 10:48, 31 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3goq.jpg\|left\|200px]]

-	The ~~entry 3goq~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3goq", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3goq\| PDB=3goq \| SCENE= }}

-	~~Authors: Karlberg, T, Hansson, M.D., Hansson, M., Al-Karadaghi, S.~~	+	===Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase===

-	Description: Crystal structure of the Tyr13Met variant of Bacillus subtilis ferrochelatase

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Apr 15 09~~:55:~~33 2009~~''	+	==About this Structure==
		+	3GOQ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOQ OCA].
		+	[[Category: Bacillus subtilis]]
		+	[[Category: Ferrochelatase]]
		+	[[Category: Al-Karadaghi, S.]]
		+	[[Category: Hansson, M.]]
		+	[[Category: Hansson, M D.]]
		+	[[Category: Karlberg, T]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Heme biosynthesis]]
		+	[[Category: Iron]]
		+	[[Category: Lyase]]
		+	[[Category: Metal-binding]]
		+	[[Category: Porphyrin biosynthesis]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:48:47 2010''