3gqp - Revision history

OCA at 15:44, 1 November 2023

OCA — Wed, 01 Nov 2023 15:44:20 GMT

←Older revision		Revision as of 15:44, 1 November 2023
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	<StructureSection load='3gqp' size='340' side='right'caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3gqp' size='340' side='right'caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Felis_silvestris_catus~~ Felis ~~silvestris~~ catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [https://pdbe.org/3gqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [https://www.ebi.ac.uk/pdbsum/3gqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqp ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [https://pdbe.org/3gqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [https://www.ebi.ac.uk/pdbsum/3gqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA~~]] Involved in oxygen transport from the lung to the various peripheral tissues. [[https://www.uniprot.org/uniprot/HBB_FELCA HBB_FELCA]~~] Involved in oxygen transport from the lung to the various peripheral tissues.	+	[https://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA] Involved in oxygen transport from the lung to the various peripheral tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gqp ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gqp ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Haemoglobin is a tetrameric protein that plays a vital role in the transport of oxygen from the lungs to the tissues and of carbon dioxide back to the lungs. Even though a large amount of work has already been performed in this area, the study of the haemoglobin structures of avian and mammalian species is rather incomplete. Efforts are being made to understand the salient features of the species mentioned above. Here, whole blood plasma was collected from sheep and goat and purified by anion-exchange chromatography; the haemoglobins were crystallized by the hanging-drop vapour-diffusion method under unbuffered low-salt conditions using PEG 3350 as a precipitant. Data collection was carried out using a MAR345 image-plate detector system. Sheep haemoglobin crystallizes in the orthorhombic space group P2(1)2(1)2(1) with one whole biological molecule (alpha2beta2) in the asymmetric unit, with unit-cell parameters a = 60.231, b = 70.695, c = 131.479 A. In contrast, goat haemoglobin crystallizes in the triclinic system with two biological molecules (alpha2beta2) in the unit cell. The unit-cell parameters are a = 53.103, b = 69.382, c = 96.098 A, alpha = 110.867, beta = 91.133, gamma = 109.437 degrees.
-
-	Crystallization of sheep (Ovis aries) and goat (Capra hircus) haemoglobins under unbuffered low-salt conditions.,Neelagandan K, Moorthy PS, Balasubramanian M, Ponnuswamy MN Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Oct 1;63(Pt, 10):887-9. Epub 2007 Sep 19. PMID:17909297<ref>PMID:17909297</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 3gqp" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Hemoglobin 3D structures\|Hemoglobin 3D structures]]		*[[Hemoglobin 3D structures\|Hemoglobin 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Felis ~~silvestris~~ catus]]	+	[[Category: Felis catus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Balasubramanian, M]]	+	[[Category: Balasubramanian M]]
-	~~[[Category: Moorthy, P Sathya~~]]	+	[[Category: Neelagandan K]]
-	[[Category: Neelagandan, K]]	+	[[Category: Ponnuswamy MN]]
-	[[Category: Ponnuswamy~~, M N~~]]	+	[[Category: Sathya Moorthy P]]
-	[[Category: ~~Chromatography]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Low oxygen affinity]]~~	+
-	~~[[Category: Methemoglobin]]~~	+
-	~~[[Category: Monoclinic]]~~	+
-	~~[[Category: Oxygen storage]]~~	+
-	~~[[Category: Oxygen transport]]~~	+
-	~~[[Category: Polymorphism]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 07:52, 16 March 2022

OCA — Wed, 16 Mar 2022 07:52:25 GMT

←Older revision		Revision as of 07:52, 16 March 2022
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	<StructureSection load='3gqp' size='340' side='right'caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3gqp' size='340' side='right'caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Felis_silvestris_catus Felis silvestris catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Felis_silvestris_catus Felis silvestris catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [~~http~~://pdbe.org/3gqp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gqp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [https://pdbe.org/3gqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [https://www.ebi.ac.uk/pdbsum/3gqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues. [[~~http~~://www.uniprot.org/uniprot/HBB_FELCA HBB_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues.	+	[[https://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues. [[https://www.uniprot.org/uniprot/HBB_FELCA HBB_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:23, 27 March 2020

OCA — Fri, 27 Mar 2020 11:23:13 GMT

←Older revision		Revision as of 11:23, 27 March 2020
Line 1:		Line 1:

	==Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution==		==Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution==
-	<StructureSection load='3gqp' size='340' side='right' caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3gqp' size='340' side='right'caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_silvestris_catus Felis silvestris catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_silvestris_catus Felis silvestris catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Felis silvestris catus]]		[[Category: Felis silvestris catus]]
		+	[[Category: Large Structures]]
	[[Category: Balasubramanian, M]]		[[Category: Balasubramanian, M]]
	[[Category: Moorthy, P Sathya]]		[[Category: Moorthy, P Sathya]]

OCA at 06:05, 20 June 2018

OCA — Wed, 20 Jun 2018 06:05:29 GMT

←Older revision		Revision as of 06:05, 20 June 2018
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	<StructureSection load='3gqp' size='340' side='right' caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3gqp' size='340' side='right' caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Cat Cat~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_silvestris_catus Felis silvestris catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/3gqp_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/3gqp_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cat~~]]	+	[[Category: Felis silvestris catus]]
	[[Category: Balasubramanian, M]]		[[Category: Balasubramanian, M]]
-	[[Category: Moorthy, ~~Pon~~ Sathya]]	+	[[Category: Moorthy, P Sathya]]
	[[Category: Neelagandan, K]]		[[Category: Neelagandan, K]]
	[[Category: Ponnuswamy, M N]]		[[Category: Ponnuswamy, M N]]
Line 49:		Line 49:
	[[Category: Oxygen storage]]		[[Category: Oxygen storage]]
	[[Category: Oxygen transport]]		[[Category: Oxygen transport]]
		+	[[Category: Polymorphism]]
	[[Category: Transport]]		[[Category: Transport]]

OCA at 08:35, 5 August 2016

OCA — Fri, 05 Aug 2016 08:35:09 GMT

←Older revision		Revision as of 08:35, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution==		==Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution==
	<StructureSection load='3gqp' size='340' side='right' caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3gqp' size='340' side='right' caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Felis_catus Felis catus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cat Cat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [http://www.ebi.ac.uk/pdbsum/3gqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [http://pdbe.org/3gqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [http://www.ebi.ac.uk/pdbsum/3gqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gqp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gqp ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3gqp" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Felis catus~~]]	+	[[Category: Cat]]
	[[Category: Balasubramanian, M]]		[[Category: Balasubramanian, M]]
	[[Category: Moorthy, Pon Sathya]]		[[Category: Moorthy, Pon Sathya]]

OCA at 17:19, 25 December 2014

OCA — Thu, 25 Dec 2014 17:19:31 GMT

←Older revision		Revision as of 17:19, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [http://www.ebi.ac.uk/pdbsum/3gqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [http://www.ebi.ac.uk/pdbsum/3gqp PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HBA_FELCA HBA_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues. [[http://www.uniprot.org/uniprot/HBB_FELCA HBB_FELCA]] Involved in oxygen transport from the lung to the various peripheral tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Felis catus]]		[[Category: Felis catus]]
-	[[Category: Balasubramanian, M.]]	+	[[Category: Balasubramanian, M]]
-	[[Category: Moorthy, Pon Sathya.]]	+	[[Category: Moorthy, Pon Sathya]]
-	[[Category: Neelagandan, K.]]	+	[[Category: Neelagandan, K]]
-	[[Category: Ponnuswamy, M N.]]	+	[[Category: Ponnuswamy, M N]]
	[[Category: Chromatography]]		[[Category: Chromatography]]
	[[Category: Heme]]		[[Category: Heme]]

OCA at 11:07, 29 September 2014

OCA — Mon, 29 Sep 2014 11:07:42 GMT

←Older revision		Revision as of 11:07, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3gqp.~~png~~\|~~left~~\|200px]]	+	==Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution==
		+	<StructureSection load='3gqp' size='340' side='right' caption='[[3gqp]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GQP FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2qu0\|2qu0]], [[2ri4\|2ri4]], [[3eu1\|3eu1]], [[3d4x\|3d4x]], [[3cy5\|3cy5]], [[3d1a\|3d1a]], [[3gqr\|3gqr]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gqp RCSB], [http://www.ebi.ac.uk/pdbsum/3gqp PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/3gqp_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Haemoglobin is a tetrameric protein that plays a vital role in the transport of oxygen from the lungs to the tissues and of carbon dioxide back to the lungs. Even though a large amount of work has already been performed in this area, the study of the haemoglobin structures of avian and mammalian species is rather incomplete. Efforts are being made to understand the salient features of the species mentioned above. Here, whole blood plasma was collected from sheep and goat and purified by anion-exchange chromatography; the haemoglobins were crystallized by the hanging-drop vapour-diffusion method under unbuffered low-salt conditions using PEG 3350 as a precipitant. Data collection was carried out using a MAR345 image-plate detector system. Sheep haemoglobin crystallizes in the orthorhombic space group P2(1)2(1)2(1) with one whole biological molecule (alpha2beta2) in the asymmetric unit, with unit-cell parameters a = 60.231, b = 70.695, c = 131.479 A. In contrast, goat haemoglobin crystallizes in the triclinic system with two biological molecules (alpha2beta2) in the unit cell. The unit-cell parameters are a = 53.103, b = 69.382, c = 96.098 A, alpha = 110.867, beta = 91.133, gamma = 109.437 degrees.

-	~~{{STRUCTURE_3gqp\| PDB=3gqp \| SCENE= }}~~	+	Crystallization of sheep (Ovis aries) and goat (Capra hircus) haemoglobins under unbuffered low-salt conditions.,Neelagandan K, Moorthy PS, Balasubramanian M, Ponnuswamy MN Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Oct 1;63(Pt, 10):887-9. Epub 2007 Sep 19. PMID:17909297<ref>PMID:17909297</ref>

-	~~===Crystal structure determination~~ of ~~cat (Felis silvestris catus) hemoglobin at 2~~.~~0 angstrom resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17909297}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3gqp]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA].~~	+

	==See Also==		==See Also==
-	*[[Hemoglobin\|Hemoglobin]]	+	*[[Hemoglobin 3D structures\|Hemoglobin 3D structures]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017909297<~~/~~ref~~><~~ref group="xtra">PMID:019255493</ref><ref group="xtra">PMID:019200047</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Felis catus]]		[[Category: Felis catus]]
	[[Category: Balasubramanian, M.]]		[[Category: Balasubramanian, M.]]

OCA at 19:22, 20 October 2012

OCA — Sat, 20 Oct 2012 19:22:26 GMT

←Older revision		Revision as of 19:22, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3gqp]] is a 4 chain structure ~~of [[Hemoglobin]]~~ with sequence from [http://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA].	+	[[3gqp]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Felis_catus Felis catus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GQP OCA].

	==See Also==		==See Also==
Line 14:		Line 14:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:017909297</ref><ref group="xtra">PMID:019255493</ref><ref group="xtra">PMID:019200047~~</ref><ref group="xtra">PMID:019356147~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017909297</ref><ref group="xtra">PMID:019255493</ref><ref group="xtra">PMID:019200047</ref><references group="xtra"/>
	[[Category: Felis catus]]		[[Category: Felis catus]]
	[[Category: Balasubramanian, M.]]		[[Category: Balasubramanian, M.]]

OCA at 07:08, 27 July 2012

OCA — Fri, 27 Jul 2012 07:08:36 GMT

←Older revision		Revision as of 07:08, 27 July 2012
Line 1:		Line 1:
	[[Image:3gqp.png\|left\|200px]]		[[Image:3gqp.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gqp", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3gqp\| PDB=3gqp \| SCENE= }}		{{STRUCTURE_3gqp\| PDB=3gqp \| SCENE= }}

	===Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution===		===Crystal structure determination of cat (Felis silvestris catus) hemoglobin at 2.0 angstrom resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17909297}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17909297 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17909297}}		{{ABSTRACT_PUBMED_17909297}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Hemoglobin]]	+	*[[Hemoglobin\|Hemoglobin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17909297~~</ref><ref group="xtra">PMID:~~19255493~~</ref><ref group="xtra">PMID:~~19200047~~</ref><ref group="xtra">PMID:~~19356147~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017909297</ref><ref group="xtra">PMID:019255493</ref><ref group="xtra">PMID:019200047</ref><ref group="xtra">PMID:019356147</ref><references group="xtra"/>
	[[Category: Felis catus]]		[[Category: Felis catus]]
	[[Category: Balasubramanian, M.]]		[[Category: Balasubramanian, M.]]
Line 39:		Line 28:
	[[Category: Oxygen storage]]		[[Category: Oxygen storage]]
	[[Category: Oxygen transport]]		[[Category: Oxygen transport]]
-	[[Category: Polymorphism]]
	[[Category: Transport]]		[[Category: Transport]]

OCA: Protected "3gqp" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 18:43:32 GMT

Protected "3gqp" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:43, 14 March 2011