3gvy - Revision history

OCA at 15:45, 1 November 2023

OCA — Wed, 01 Nov 2023 15:45:41 GMT

←Older revision		Revision as of 15:45, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3gvy' size='340' side='right'caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3gvy' size='340' side='right'caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Rhodobacter_sphaeroides Rhodobacter~~ sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [https://pdbe.org/3gvy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [https://www.ebi.ac.uk/pdbsum/3gvy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [https://pdbe.org/3gvy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [https://www.ebi.ac.uk/pdbsum/3gvy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~Q3J696_RHOS4 Q3J696_RHOS4~~]~~] Iron-storage protein (By similarity).[RuleBase:RU000623]~~ Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex ~~(By similarity)~~.[PIRNR:PIRNR002560]	+	[https://www.uniprot.org/uniprot/Q3J696_CERS4 Q3J696_CERS4] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex.[PIRNR:PIRNR002560]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cereibacter sphaeroides 2 4.1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Rhodobacter sphaeroides]]~~	+	[[Category: Hwang KY]]
-	[[Category: Hwang~~, K Y~~]]	+	[[Category: Nam KH]]
-	[[Category: Nam~~, K H]]~~	+
-	~~[[Category: Bacterioferritin]]~~	+
-	~~[[Category: Di-iron]]~~	+
-	~~[[Category: Ferritin]]~~	+
-	~~[[Category: Ferroxidase activity]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Iron storage]]~~	+
-	~~[[Category: Metal binding protein~~]]	+

OCA at 07:56, 16 March 2022

OCA — Wed, 16 Mar 2022 07:56:09 GMT

←Older revision		Revision as of 07:56, 16 March 2022
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	<StructureSection load='3gvy' size='340' side='right'caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3gvy' size='340' side='right'caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GVY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [~~http~~://pdbe.org/3gvy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gvy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [https://pdbe.org/3gvy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [https://www.ebi.ac.uk/pdbsum/3gvy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/Q3J696_RHOS4 Q3J696_RHOS4]] Iron-storage protein (By similarity).[RuleBase:RU000623] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560]	+	[[https://www.uniprot.org/uniprot/Q3J696_RHOS4 Q3J696_RHOS4]] Iron-storage protein (By similarity).[RuleBase:RU000623] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:42, 7 August 2019

OCA — Wed, 07 Aug 2019 06:42:59 GMT

←Older revision		Revision as of 06:42, 7 August 2019
Line 1:		Line 1:

	==Crystal structure of bacterioferritin from R.sphaeroides==		==Crystal structure of bacterioferritin from R.sphaeroides==
-	<StructureSection load='3gvy' size='340' side='right' caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='3gvy' size='340' side='right'caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvy_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 3gvy" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3gvy" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Hwang, K Y]]		[[Category: Hwang, K Y]]

OCA at 07:14, 1 November 2017

OCA — Wed, 01 Nov 2017 07:14:56 GMT

←Older revision		Revision as of 07:14, 1 November 2017
Line 1:		Line 1:
		+
	==Crystal structure of bacterioferritin from R.sphaeroides==		==Crystal structure of bacterioferritin from R.sphaeroides==
	<StructureSection load='3gvy' size='340' side='right' caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='3gvy' size='340' side='right' caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://pdbe.org/3gvy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://pdbe.org/3gvy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gvy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 3gvy" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3gvy" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Ferritin\|Ferritin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 19:40, 8 February 2016

OCA — Mon, 08 Feb 2016 19:40:19 GMT

←Older revision		Revision as of 19:40, 8 February 2016
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://pdbe.org/3gvy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gvy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3gvy" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 01:42, 25 December 2014

OCA — Thu, 25 Dec 2014 01:42:43 GMT

←Older revision		Revision as of 01:42, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q3J696_RHOS4 Q3J696_RHOS4]] Iron-storage protein (By similarity).[RuleBase:RU000623] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
-	[[Category: Hwang, K Y.]]	+	[[Category: Hwang, K Y]]
-	[[Category: Nam, K H.]]	+	[[Category: Nam, K H]]
	[[Category: Bacterioferritin]]		[[Category: Bacterioferritin]]
	[[Category: Di-iron]]		[[Category: Di-iron]]

OCA at 12:14, 29 September 2014

OCA — Mon, 29 Sep 2014 12:14:04 GMT

←Older revision		Revision as of 12:14, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:3gvy.~~png\|left~~\|200px]]	+	==Crystal structure of bacterioferritin from R.sphaeroides==
		+	<StructureSection load='3gvy' size='340' side='right' caption='[[3gvy]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GVY FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gvy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gvy RCSB], [http://www.ebi.ac.uk/pdbsum/3gvy PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gv/3gvy_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Iron is essential for the survival of organisms, but either excess or deficient levels of iron induce oxidative stress, thereby causing cell damage. As a result, iron regulation is essential for proper cell growth and proliferation in most organisms. Bacterioferritin is a ferritin-like family protein that contains a heme molecule and a ferroxidase site at the di-iron center. This protein plays a primary role in intracellular iron storage for iron homeostasis, as well as in the maintenance of iron in a soluble and non-toxic form. Although several bacterioferritin structures have been determined, no structural studies have successfully elucidated the molecular function of the heme molecule and the ferroxidase center. Here, we report the crystal structure of bacterioferritin from Rhodobacter sphaeroides. This protein exists in a roughly spherical configuration via the assembly of 24 subunits. We describe the oligomeric arrangement, ferroxidase center and heme-binding site based on this structure. The protein contains a single iron-binding configuration in the ferroxidase center, which allows for the release of iron by His130 when the protein is in the intermediate state. The heme molecule in RsBfr is stabilized by shifting of the van der Waals interaction center between the porphyrin of the heme and Trp26. We anticipate that further structural analysis will provide a more complete understanding of the molecular mechanisms of members of the ferritin-like family.

-	~~{{STRUCTURE_3gvy\| PDB=3gvy \| SCENE= }}~~	+	Crystal structure of bacterioferritin from Rhodobacter sphaeroides.,Nam KH, Xu Y, Piao S, Priyadarshi A, Lee EH, Kim HY, Jeon YH, Ha NC, Hwang KY Biochem Biophys Res Commun. 2010 Jan 1;391(1):990-4. Epub 2009 Dec 5. PMID:19968959<ref>PMID:19968959</ref>

-	~~===Crystal structure~~ of ~~bacterioferritin from R~~.~~sphaeroides===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19968959}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3gvy]] is a 3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA].~~	+

	==See Also==		==See Also==
	*[[Ferritin\|Ferritin]]		*[[Ferritin\|Ferritin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019968959<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Hwang, K Y.]]		[[Category: Hwang, K Y.]]

OCA at 11:15, 20 October 2012

OCA — Sat, 20 Oct 2012 11:15:56 GMT

←Older revision		Revision as of 11:15, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3gvy]] is a 3 chain structure ~~of [[Ferritin]]~~ with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA].	+	[[3gvy]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GVY OCA].

	==See Also==		==See Also==

OCA at 04:45, 26 July 2012

OCA — Thu, 26 Jul 2012 04:45:47 GMT

←Older revision		Revision as of 04:45, 26 July 2012
Line 1:		Line 1:
	[[Image:3gvy.png\|left\|200px]]		[[Image:3gvy.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gvy", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3gvy\| PDB=3gvy \| SCENE= }}		{{STRUCTURE_3gvy\| PDB=3gvy \| SCENE= }}

	===Crystal structure of bacterioferritin from R.sphaeroides===		===Crystal structure of bacterioferritin from R.sphaeroides===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19968959}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19968959 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19968959}}		{{ABSTRACT_PUBMED_19968959}}

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	==See Also==		==See Also==
-	*[[Ferritin]]	+	*[[Ferritin\|Ferritin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19968959~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019968959</ref><references group="xtra"/>
	[[Category: Rhodobacter sphaeroides]]		[[Category: Rhodobacter sphaeroides]]
	[[Category: Hwang, K Y.]]		[[Category: Hwang, K Y.]]

OCA: Protected "3gvy" [edit=sysop:move=sysop]

OCA — Mon, 27 Dec 2010 02:22:09 GMT

Protected "3gvy" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:22, 27 December 2010