3gy1 - Revision history

OCA at 09:57, 21 February 2024

OCA — Wed, 21 Feb 2024 09:57:18 GMT

←Older revision		Revision as of 09:57, 21 February 2024
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	==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==		==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==
-	<StructureSection load='3gy1' size='340' side='right'caption='[[3gy1]]' scene=''>	+	<StructureSection load='3gy1' size='340' side='right'caption='[[3gy1]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gy1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_beijerinckii_NCIMB_8052 Clostridium beijerinckii NCIMB 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [https://pdbe.org/3gy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [https://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gy1 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [https://pdbe.org/3gy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [https://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gy1 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/IMAND_CLOB8 IMAND_CLOB8] Has no detectable activity with D-mannonate and with a panel of 70 other acid sugars (in vitro), in spite of the conservation of the residues that are expected to be important for catalytic activity and cofactor binding. May have evolved a divergent function.<ref>PMID:24697546</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gy1 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gy1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Clostridium beijerinckii NCIMB 8052]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Almo SC]]		[[Category: Almo SC]]

OCA at 07:58, 16 March 2022

OCA — Wed, 16 Mar 2022 07:58:09 GMT

←Older revision		Revision as of 07:58, 16 March 2022
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==		==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==
-	<StructureSection load='3gy1' size='340' side='right' caption='[[3gy1]]~~, [[Resolution\|resolution]] 1.60Å~~' scene=''>	+	<StructureSection load='3gy1' size='340' side='right'caption='[[3gy1]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clob8 Clob8].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>
-	</td></tr>~~<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [https://pdbe.org/3gy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [https://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gy1 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 CLOB8])</td></tr>~~	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [~~http~~://pdbe.org/3gy1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gy1 ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>	+
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/IMAND_CLOB8 IMAND_CLOB8]] Has no detectable activity with D-mannonate and with a panel of 70 other acid sugars (in vitro), in spite of the conservation of the residues that are expected to be important for catalytic activity and cofactor binding. May have evolved a divergent function.<ref>PMID:24697546</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gy1_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gy1_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 20:		Line 16:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gy1 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gy1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clob8~~]]	+	[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Malashkevich~~, V N~~]]	+	[[Category: Malashkevich VN]]
-	[[Category: Morano, C]]	+	[[Category: Morano C]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Toro R]]
-	[[Category: Toro, R]]	+
-	~~[[Category: Clostridium beijerinckii ncimb 8052]]~~	+
-	~~[[Category: Enolase]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Mandelate racemase/muconate lactonizing protein]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 07:16, 1 November 2017

OCA — Wed, 01 Nov 2017 07:16:24 GMT

←Older revision		Revision as of 07:16, 1 November 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==		==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==
	<StructureSection load='3gy1' size='340' side='right' caption='[[3gy1]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3gy1' size='340' side='right' caption='[[3gy1]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 CLOB8])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 CLOB8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://pdbe.org/3gy1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://pdbe.org/3gy1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gy1 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 32:		Line 33:
	[[Category: Toro, R]]		[[Category: Toro, R]]
	[[Category: Clostridium beijerinckii ncimb 8052]]		[[Category: Clostridium beijerinckii ncimb 8052]]
-	[[Category: Crystal structure]]
	[[Category: Enolase]]		[[Category: Enolase]]
	[[Category: Isomerase]]		[[Category: Isomerase]]

OCA at 11:09, 7 February 2016

OCA — Sun, 07 Feb 2016 11:09:04 GMT

←Older revision		Revision as of 11:09, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3gy1' size='340' side='right' caption='[[3gy1]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3gy1' size='340' side='right' caption='[[3gy1]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clob8 Clob8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 ~~Clostridium beijerinckii NCIMB 8052~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 CLOB8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://pdbe.org/3gy1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~A6M2W4_CLOB8 A6M2W4_CLOB8~~]] Has no detectable activity with D-mannonate and with a panel of 70 other acid sugars (in vitro), in spite of the conservation of the residues that are expected to be important for catalytic activity and cofactor binding. May have evolved a divergent function.	+	[[http://www.uniprot.org/uniprot/IMAND_CLOB8 IMAND_CLOB8]] Has no detectable activity with D-mannonate and with a panel of 70 other acid sugars (in vitro), in spite of the conservation of the residues that are expected to be important for catalytic activity and cofactor binding. May have evolved a divergent function.<ref>PMID:24697546</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gy1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clostridium beijerinckii ncimb 8052~~]]	+	[[Category: Clob8]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
Line 29:		Line 31:
	[[Category: Sauder, J M]]		[[Category: Sauder, J M]]
	[[Category: Toro, R]]		[[Category: Toro, R]]
		+	[[Category: Clostridium beijerinckii ncimb 8052]]
	[[Category: Crystal structure]]		[[Category: Crystal structure]]
	[[Category: Enolase]]		[[Category: Enolase]]

OCA at 14:38, 24 December 2014

OCA — Wed, 24 Dec 2014 14:38:11 GMT

←Older revision		Revision as of 14:38, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A6M2W4_CLOB8 A6M2W4_CLOB8]] Has no detectable activity with D-mannonate and with a panel of 70 other acid sugars (in vitro), in spite of the conservation of the residues that are expected to be important for catalytic activity and cofactor binding. May have evolved a divergent function.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:43, 6 November 2014

OCA — Thu, 06 Nov 2014 12:43:55 GMT

←Older revision		Revision as of 12:43, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 Clostridium beijerinckii NCIMB 8052])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 Clostridium beijerinckii NCIMB 8052])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium beijerinckii ncimb 8052]]		[[Category: Clostridium beijerinckii ncimb 8052]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Malashkevich, V N.]]	+	[[Category: Malashkevich, V N]]
-	[[Category: Morano, C.]]	+	[[Category: Morano, C]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Sauder, J M.]]	+	[[Category: Sauder, J M]]
-	[[Category: Toro, R~~.]]~~	+	[[Category: Toro, R]]
-	~~[[Category: Clostridium beijerinckii ncimb 8052~~]]	+
	[[Category: Crystal structure]]		[[Category: Crystal structure]]
	[[Category: Enolase]]		[[Category: Enolase]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Mandelate racemase/muconate lactonizing protein]]		[[Category: Mandelate racemase/muconate lactonizing protein]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+	[[Category: PSI, Protein structure initiative]]
-	[[Category: Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 11:07, 29 September 2014

OCA — Mon, 29 Sep 2014 11:07:20 GMT

←Older revision		Revision as of 11:07, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:3gy1.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052==
-		+	<StructureSection load='3gy1' size='340' side='right' caption='[[3gy1]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_3gy1\| PDB=3gy1 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GY1 FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cbei_4837 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=290402 Clostridium beijerinckii NCIMB 8052])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gy1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gy1 RCSB], [http://www.ebi.ac.uk/pdbsum/3gy1 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3gy1 TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/3gy1_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Clostridium beijerinckii ncimb 8052]]		[[Category: Clostridium beijerinckii ncimb 8052]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA: Protected "3gy1" [edit=sysop:move=sysop]

OCA — Wed, 24 Oct 2012 06:20:30 GMT

Protected "3gy1" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:20, 24 October 2012

OCA at 06:20, 24 October 2012

OCA — Wed, 24 Oct 2012 06:20:28 GMT

←Older revision		Revision as of 06:20, 24 October 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3gy1.png\|left\|200px]]
-	[[Image:3gy1.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gy1", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3gy1\| PDB=3gy1 \| SCENE= }}		{{STRUCTURE_3gy1\| PDB=3gy1 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3GY1~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA].	+	[[3gy1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_beijerinckii_ncimb_8052 Clostridium beijerinckii ncimb 8052]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GY1 OCA].
	[[Category: Clostridium beijerinckii ncimb 8052]]		[[Category: Clostridium beijerinckii ncimb 8052]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
Line 21:		Line 14:
	[[Category: Morano, C.]]		[[Category: Morano, C.]]
	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
-	[[Category: Sauder, M J.]]	+	[[Category: Sauder, J M.]]
	[[Category: Toro, R.]]		[[Category: Toro, R.]]
	[[Category: Clostridium beijerinckii ncimb 8052]]		[[Category: Clostridium beijerinckii ncimb 8052]]
Line 33:		Line 26:
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 15 10:39:58 2009''

OCA: New page: {{Seed}} 200px