3gz6 - Revision history

OCA at 07:13, 6 September 2023

OCA — Wed, 06 Sep 2023 07:13:54 GMT

←Older revision		Revision as of 07:13, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3gz6' size='340' side='right'caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='3gz6' size='340' side='right'caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_700550 Atcc 700550~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.901Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[3gz5\|3gz5]], [[3gz8\|3gz8]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">NrtR, SO_1979 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [https://pdbe.org/3gz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [https://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [https://pdbe.org/3gz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [https://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8EFJ3_SHEON Q8EFJ3_SHEON]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 700550]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Huang, N~~]]	+	[[Category: Shewanella oneidensis]]
-	[[Category: ~~Zhang, H~~]]	+	[[Category: Huang N]]
-	[[Category: ~~Dna binding protein]]~~	+	[[Category: Zhang H]]
-	~~[[Category: Dna binding protein-dna complex]]~~	+
-	~~[[Category: Nudix domain]]~~	+
-	~~[[Category: Whth domain~~]]	+

OCA at 07:58, 16 March 2022

OCA — Wed, 16 Mar 2022 07:58:47 GMT

←Older revision		Revision as of 07:58, 16 March 2022
Line 3:		Line 3:
	<StructureSection load='3gz6' size='340' side='right'caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='3gz6' size='340' side='right'caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3gz5\|3gz5]], [[3gz8\|3gz8]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [~~http~~://pdbe.org/3gz6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [https://pdbe.org/3gz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [https://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:16, 24 July 2019

OCA — Wed, 24 Jul 2019 08:16:00 GMT

←Older revision		Revision as of 08:16, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA==		==Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA==
-	<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>	+	<StructureSection load='3gz6' size='340' side='right'caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 3gz6" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3gz6" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures\|7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 700550]]		[[Category: Atcc 700550]]
		+	[[Category: Large Structures]]
	[[Category: Huang, N]]		[[Category: Huang, N]]
	[[Category: Zhang, H]]		[[Category: Zhang, H]]

OCA at 06:32, 4 April 2018

OCA — Wed, 04 Apr 2018 06:32:28 GMT

←Older revision		Revision as of 06:32, 4 April 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gz6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gz6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:17, 1 November 2017

OCA — Wed, 01 Nov 2017 07:17:05 GMT

←Older revision		Revision as of 07:17, 1 November 2017
Line 3:		Line 3:
	<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://pdbe.org/3gz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://pdbe.org/3gz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>
	</table>		</table>
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 700550]]
	[[Category: Huang, N]]		[[Category: Huang, N]]
	[[Category: Zhang, H]]		[[Category: Zhang, H]]

OCA at 08:04, 18 January 2017

OCA — Wed, 18 Jan 2017 08:04:05 GMT

←Older revision		Revision as of 08:04, 18 January 2017
Line 1:		Line 1:
		+
	==Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA==		==Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA==
	<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://pdbe.org/3gz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gz6 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://pdbe.org/3gz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 700550]]
	[[Category: Huang, N]]		[[Category: Huang, N]]
	[[Category: Zhang, H]]		[[Category: Zhang, H]]

OCA at 11:21, 7 February 2016

OCA — Sun, 07 Feb 2016 11:21:48 GMT

←Older revision		Revision as of 11:21, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Shewanella_oneidensis Shewanella oneidensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ~~Shewanella oneidensis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://pdbe.org/3gz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gz6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3gz6" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Shewanella oneidensis~~]]	+	[[Category: Atcc 700550]]
	[[Category: Huang, N]]		[[Category: Huang, N]]
	[[Category: Zhang, H]]		[[Category: Zhang, H]]

OCA at 09:21, 8 December 2014

OCA — Mon, 08 Dec 2014 09:21:55 GMT

←Older revision		Revision as of 09:21, 8 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3gz6.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA==
		+	<StructureSection load='3gz6' size='340' side='right' caption='[[3gz6]], [[Resolution\|resolution]] 2.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GZ6 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3gz5\|3gz5]], [[3gz8\|3gz8]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NrtR, SO_1979 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 Shewanella oneidensis])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gz6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gz6 RCSB], [http://www.ebi.ac.uk/pdbsum/3gz6 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gz/3gz6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Besides its function as an essential redox cofactor, nicotinamide adenine dinucleotide (NAD) also serves as a consumable substrate for several reactions with broad impact on many cellular processes. NAD homeostasis appears to be tightly controlled, but the mechanism of its regulation is little understood. Here we demonstrate that a previously predicted bacterial transcriptional regulator, NrtR, represses the transcription of NAD biosynthetic genes in vitro. The NAD metabolite ADP-ribose functions as an activator suppressing NrtR repressor activity. The presence of high ADP-ribose levels in the cell is indicative of active NAD turnover in bacteria, which could signal the activation of NAD biosynthetic gene expression via inhibiting the repressor function of NrtR. By comparing the crystal structures of NrtR in complex with DNA and with ADP-ribose, we identified a "Nudix switch" element that likely plays a critical role in the allosteric regulation of DNA binding and repressor function of NrtR.

-	~~{{STRUCTURE_3gz6\| PDB=3gz6 \| SCENE= }}~~	+	Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism.,Huang N, De Ingeniis J, Galeazzi L, Mancini C, Korostelev YD, Rakhmaninova AB, Gelfand MS, Rodionov DA, Raffaelli N, Zhang H Structure. 2009 Jul 15;17(7):939-51. PMID:19604474<ref>PMID:19604474</ref>

-	~~===Crystal structure~~ of ~~Shewanella oneidensis NrtR complexed with a 27mer DNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19604474}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[3gz6]] is a 4 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA].~~	+	</StructureSection>
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
-	[[Category: Huang, N.]]	+	[[Category: Huang, N]]
-	[[Category: Zhang, H.]]	+	[[Category: Zhang, H]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
	[[Category: Dna binding protein-dna complex]]		[[Category: Dna binding protein-dna complex]]
	[[Category: Nudix domain]]		[[Category: Nudix domain]]
	[[Category: Whth domain]]		[[Category: Whth domain]]

OCA: Protected "3gz6" [edit=sysop:move=sysop]

OCA — Wed, 27 Feb 2013 15:20:37 GMT

Protected "3gz6" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:20, 27 February 2013

OCA at 15:20, 27 February 2013

OCA — Wed, 27 Feb 2013 15:20:30 GMT

←Older revision		Revision as of 15:20, 27 February 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3gz6.png\|left\|200px]]
-	[[Image:3gz6.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3gz6", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3gz6\| PDB=3gz6 \| SCENE= }}		{{STRUCTURE_3gz6\| PDB=3gz6 \| SCENE= }}

	===Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA===		===Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA===

		+	{{ABSTRACT_PUBMED_19604474}}

	==About this Structure==		==About this Structure==
-	~~3GZ6~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA].	+	[[3gz6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GZ6 OCA].
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
	[[Category: Huang, N.]]		[[Category: Huang, N.]]
	[[Category: Zhang, H.]]		[[Category: Zhang, H.]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
-	[[Category: Dna binding protein/dna complex]]	+	[[Category: Dna binding protein-dna complex]]
	[[Category: Nudix domain]]		[[Category: Nudix domain]]
	[[Category: Whth domain]]		[[Category: Whth domain]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:08:09 2009''