3hao - Revision history

OCA at 11:57, 13 October 2021

OCA — Wed, 13 Oct 2021 11:57:05 GMT

←Older revision		Revision as of 11:57, 13 October 2021
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	==Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles==		==Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles==
-	<StructureSection load='3hao' size='340' side='right' caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>	+	<StructureSection load='3hao' size='340' side='right'caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3HAO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [~~http~~://pdbe.org/3hao PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3hao PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3hao ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [https://pdbe.org/3hao PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [https://www.ebi.ac.uk/pdbsum/3hao PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hao ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.	+	[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hao_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hao_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 3hao" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3hao" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Bacteriorhodopsin 3D structures\|Bacteriorhodopsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus halobius ruber klebahn 1919]]		[[Category: Bacillus halobius ruber klebahn 1919]]
		+	[[Category: Large Structures]]
	[[Category: Bowie, J U]]		[[Category: Bowie, J U]]
	[[Category: Joh, N H]]		[[Category: Joh, N H]]

OCA at 07:26, 1 November 2017

OCA — Wed, 01 Nov 2017 07:26:57 GMT

←Older revision		Revision as of 07:26, 1 November 2017
Line 1:		Line 1:
		+
	==Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles==		==Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles==
	<StructureSection load='3hao' size='340' side='right' caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>		<StructureSection load='3hao' size='340' side='right' caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://pdbe.org/3hao PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://pdbe.org/3hao PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hao ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 29:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 3hao" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3hao" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:47, 9 February 2016

OCA — Tue, 09 Feb 2016 12:47:11 GMT

←Older revision		Revision as of 12:47, 9 February 2016
Line 2:		Line 2:
	<StructureSection load='3hao' size='340' side='right' caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>		<StructureSection load='3hao' size='340' side='right' caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Halobacterium_salinarum Halobacterium salinarum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 ~~Halobacterium salinarum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://pdbe.org/3hao PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hao ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3hao" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Halobacterium salinarum~~]]	+	[[Category: Bacillus halobius ruber klebahn 1919]]
	[[Category: Bowie, J U]]		[[Category: Bowie, J U]]
	[[Category: Joh, N H]]		[[Category: Joh, N H]]

OCA at 06:55, 25 December 2014

OCA — Thu, 25 Dec 2014 06:55:24 GMT

←Older revision		Revision as of 06:55, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAO FirstGlance]. <br>		<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
-	[[Category: Bowie, J U.]]	+	[[Category: Bowie, J U]]
-	[[Category: Joh, N H.]]	+	[[Category: Joh, N H]]
-	[[Category: Yang, D.]]	+	[[Category: Yang, D]]
	[[Category: Bacteriorhodopsin]]		[[Category: Bacteriorhodopsin]]
	[[Category: Cell membrane]]		[[Category: Cell membrane]]

OCA at 10:54, 29 September 2014

OCA — Mon, 29 Sep 2014 10:54:48 GMT

←Older revision		Revision as of 10:54, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~3hao.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles==
		+	<StructureSection load='3hao' size='340' side='right' caption='[[3hao]], [[Resolution\|resolution]] 2.49Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3hao]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HAO FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RET:RETINAL'>RET</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3han\|3han]], [[3hap\|3hap]], [[3haq\|3haq]], [[3har\|3har]], [[3has\|3has]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 Halobacterium salinarum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hao OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hao RCSB], [http://www.ebi.ac.uk/pdbsum/3hao PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hao_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A major driving force for water-soluble protein folding is the hydrophobic effect, but membrane proteins cannot make use of this stabilizing contribution in the apolar core of the bilayer. It has been proposed that membrane proteins compensate by packing more efficiently. We therefore investigated packing contributions experimentally by observing the energetic and structural consequences of cavity creating mutations in the core of a membrane protein. We observed little difference in the packing energetics of water and membrane soluble proteins. Our results imply that other mechanisms are employed to stabilize the structure of membrane proteins.

-	~~{{STRUCTURE_3hao\| PDB=3hao \| SCENE= }}~~	+	Similar energetic contributions of packing in the core of membrane and water-soluble proteins.,Joh NH, Oberai A, Yang D, Whitelegge JP, Bowie JU J Am Chem Soc. 2009 Aug 12;131(31):10846-7. PMID:19603754<ref>PMID:19603754</ref>

-	~~===Crystal structure~~ of ~~bacteriorhodopsin mutant L94A crystallized from bicelles===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19603754}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3hao]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Halobacterium_salinarum Halobacterium salinarum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA].~~	+

	==See Also==		==See Also==
	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]		*[[Bacteriorhodopsin\|Bacteriorhodopsin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019603754<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U.]]

OCA at 13:53, 20 October 2012

OCA — Sat, 20 Oct 2012 13:53:43 GMT

←Older revision		Revision as of 13:53, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3hao]] is a 2 chain structure ~~of [[Bacteriorhodopsin]]~~ with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA].	+	[[3hao]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA].

	==See Also==		==See Also==

OCA: Protected "3hao" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 13:26:41 GMT

Protected "3hao" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:26, 26 July 2012

OCA at 13:26, 26 July 2012

OCA — Thu, 26 Jul 2012 13:26:39 GMT

←Older revision		Revision as of 13:26, 26 July 2012
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-	~~{{Seed}}~~	+	[[Image:3hao.png\|left\|200px]]
-	[[Image:3hao.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3hao", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3hao\| PDB=3hao \| SCENE= }}		{{STRUCTURE_3hao\| PDB=3hao \| SCENE= }}

	===Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles===		===Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19603754}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19603754 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19603754}}		{{ABSTRACT_PUBMED_19603754}}

	==About this Structure==		==About this Structure==
-	~~3HAO~~ is a 2 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA].	+	[[3hao]] is a 2 chain structure of [[Bacteriorhodopsin]] with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA].
		+
		+	==See Also==
		+	*[[Bacteriorhodopsin\|Bacteriorhodopsin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19603754~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019603754</ref><references group="xtra"/>
	[[Category: Halobacterium salinarum]]		[[Category: Halobacterium salinarum]]
	[[Category: Bowie, J U.]]		[[Category: Bowie, J U.]]
Line 49:		Line 40:
	[[Category: Transport protein]]		[[Category: Transport protein]]
	[[Category: Van der waal]]		[[Category: Van der waal]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 08:49:19 2009''

OCA at 05:49, 23 September 2009

OCA — Wed, 23 Sep 2009 05:49:21 GMT

←Older revision		Revision as of 05:49, 23 September 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3hao.jpg\|left\|200px]]

-	The ~~entry 3hao~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3hao", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3hao\| PDB=3hao \| SCENE= }}

-	~~Authors: Joh, N.H., Yang, D., Bowie, J.U.~~	+	===Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles===

-	Description: Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~May 13 09~~:37:02 2009''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19603754}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19603754 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19603754}}
		+
		+	==About this Structure==
		+	3HAO is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAO OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19603754</ref><references group="xtra"/>
		+	[[Category: Halobacterium salinarum]]
		+	[[Category: Bowie, J U.]]
		+	[[Category: Joh, N H.]]
		+	[[Category: Yang, D.]]
		+	[[Category: Bacteriorhodopsin]]
		+	[[Category: Cell membrane]]
		+	[[Category: Chromophore]]
		+	[[Category: Evolutionary constraint]]
		+	[[Category: Helical membrane protein]]
		+	[[Category: Hydrogen ion transport]]
		+	[[Category: Integral membrane protein]]
		+	[[Category: Ion transport]]
		+	[[Category: Membrane]]
		+	[[Category: Membrane protein]]
		+	[[Category: Packing force]]
		+	[[Category: Photoreceptor protein]]
		+	[[Category: Proton transport]]
		+	[[Category: Pyrrolidone carboxylic acid]]
		+	[[Category: Receptor]]
		+	[[Category: Retinal protein]]
		+	[[Category: Sensory transduction]]
		+	[[Category: Transmembrane]]
		+	[[Category: Transport]]
		+	[[Category: Transport protein]]
		+	[[Category: Van der waal]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 08:49:19 2009''

OCA: New page: '''Unreleased structure''' The entry 3hao is ON HOLD until Paper Publication Authors: Joh, N.H., Yang, D., Bowie, J.U. Description: Crystal structure of bacteriorhodopsin mutant L94A c...

OCA — Wed, 13 May 2009 06:37:02 GMT

New page: '''Unreleased structure''' The entry 3hao is ON HOLD until Paper Publication Authors: Joh, N.H., Yang, D., Bowie, J.U. Description: Crystal structure of bacteriorhodopsin mutant L94A c...

New page

'''Unreleased structure'''

The entry 3hao is ON HOLD until Paper Publication

Authors: Joh, N.H., Yang, D., Bowie, J.U.

Description: Crystal structure of bacteriorhodopsin mutant L94A crystallized from bicelles

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 13 09:37:02 2009''