3hfu - Revision history

OCA at 07:21, 6 September 2023

OCA — Wed, 06 Sep 2023 07:21:16 GMT

←Older revision		Revision as of 07:21, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3hfu' size='340' side='right'caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3hfu' size='340' side='right'caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HFU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HFU FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1~~,2~~-ETHANEDIOL'>EDO</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max~~-~~height: 3em;~~'>~~[[2hxr\|2hxr]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">b0338, cynR, JW5894 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [https://pdbe.org/3hfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [https://www.ebi.ac.uk/pdbsum/3hfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [https://pdbe.org/3hfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [https://www.ebi.ac.uk/pdbsum/3hfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CYNR_ECOLI CYNR_ECOLI]] Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region.	+	[https://www.uniprot.org/uniprot/CYNR_ECOLI CYNR_ECOLI] Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dong, A]]	+	[[Category: Dong A]]
-	[[Category: Edwards~~, A M~~]]	+	[[Category: Edwards AM]]
-	[[Category: Evdokimova, E]]	+	[[Category: Evdokimova E]]
-	[[Category: Kagan, O]]	+	[[Category: Kagan O]]
-	[[Category: Savchenko, A]]	+	[[Category: Savchenko A]]
-	[[Category: Singer~~, A U]]~~	+	[[Category: Singer AU]]
-	~~[[Category: Activator]]~~	+
-	~~[[Category: Azide]]~~	+
-	~~[[Category: Cynr]]~~	+
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Dna-binding]]~~	+
-	~~[[Category: Effector]]~~	+
-	~~[[Category: Lysr transcriptional activiator]]~~	+
-	~~[[Category: Repressor]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription regulation~~]]	+

OCA at 12:46, 23 March 2022

OCA — Wed, 23 Mar 2022 12:46:48 GMT

←Older revision		Revision as of 12:46, 23 March 2022
Line 1:		Line 1:

	==Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide==		==Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide==
-	<StructureSection load='3hfu' size='340' side='right' caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='3hfu' size='340' side='right'caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3HFU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HFU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hxr\|2hxr]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2hxr\|2hxr]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [~~http~~://pdbe.org/3hfu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3hfu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [https://pdbe.org/3hfu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [https://www.ebi.ac.uk/pdbsum/3hfu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CYNR_ECOLI CYNR_ECOLI]] Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region.	+	[[https://www.uniprot.org/uniprot/CYNR_ECOLI CYNR_ECOLI]] Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:

	==See Also==		==See Also==
-	*[[Transcriptional activator\|Transcriptional activator]]	+	*[[Transcriptional activator 3D structures\|Transcriptional activator 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Ecoli]]		[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Dong, A]]		[[Category: Dong, A]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]

OCA at 08:00, 12 December 2018

OCA — Wed, 12 Dec 2018 08:00:14 GMT

←Older revision		Revision as of 08:00, 12 December 2018
Line 1:		Line 1:
		+
	==Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide==		==Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide==
	<StructureSection load='3hfu' size='340' side='right' caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3hfu' size='340' side='right' caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hxr\|2hxr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hxr\|2hxr]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://pdbe.org/3hfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://pdbe.org/3hfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hfu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/3hfu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/3hfu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 36:		Line 37:
	[[Category: Azide]]		[[Category: Azide]]
	[[Category: Cynr]]		[[Category: Cynr]]
		+	[[Category: Cytoplasm]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
	[[Category: Effector]]		[[Category: Effector]]

OCA at 14:59, 8 February 2016

OCA — Mon, 08 Feb 2016 14:59:22 GMT

←Older revision		Revision as of 14:59, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3hfu' size='340' side='right' caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='3hfu' size='340' side='right' caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HFU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HFU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hxr\|2hxr]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hxr\|2hxr]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~562 Escherichia coli~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://pdbe.org/3hfu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hfu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Ecoli]]
	[[Category: Dong, A]]		[[Category: Dong, A]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]

OCA at 00:12, 25 December 2014

OCA — Thu, 25 Dec 2014 00:12:09 GMT

←Older revision		Revision as of 00:12, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CYNR_ECOLI CYNR_ECOLI]] Positively regulates the cynTSX operon, and negatively regulates its own transcription. Binds specifically to the cynR-cynTSX intergenic region.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:13, 8 December 2014

OCA — Mon, 08 Dec 2014 09:13:55 GMT

←Older revision		Revision as of 09:13, 8 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3hfu.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide==
		+	<StructureSection load='3hfu' size='340' side='right' caption='[[3hfu]], [[Resolution\|resolution]] 2.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3hfu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HFU FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2hxr\|2hxr]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">b0338, cynR, JW5894 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hfu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hfu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hfu RCSB], [http://www.ebi.ac.uk/pdbsum/3hfu PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/3hfu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

-	~~{{STRUCTURE_3hfu\| PDB~~=~~3hfu \| SCENE= }}~~	+	==See Also==
-		+	*[[Transcriptional activator\|Transcriptional activator]]
-	~~===Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide~~===	+	__TOC__
-		+	</StructureSection>
-		+
-	~~==About this Structure==~~	+
-	[[~~3hfu~~]] ~~is a 4 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA].~~	+
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Dong, A.]]	+	[[Category: Dong, A]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Evdokimova, E.]]	+	[[Category: Evdokimova, E]]
-	[[Category: Kagan, O.]]	+	[[Category: Kagan, O]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Singer, A U.]]	+	[[Category: Singer, A U]]
	[[Category: Activator]]		[[Category: Activator]]
	[[Category: Azide]]		[[Category: Azide]]

OCA: Protected "3hfu" [edit=sysop:move=sysop]

OCA — Wed, 06 Mar 2013 14:38:28 GMT

Protected "3hfu" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:38, 6 March 2013

OCA at 14:38, 6 March 2013

OCA — Wed, 06 Mar 2013 14:38:24 GMT

←Older revision		Revision as of 14:38, 6 March 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3hfu.png\|left\|200px]]
-	[[Image:3hfu.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3hfu", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3hfu\| PDB=3hfu \| SCENE= }}		{{STRUCTURE_3hfu\| PDB=3hfu \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3HFU~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA].	+	[[3hfu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Dong, A.]]		[[Category: Dong, A.]]
Line 25:		Line 18:
	[[Category: Azide]]		[[Category: Azide]]
	[[Category: Cynr]]		[[Category: Cynr]]
-	[[Category: Cytoplasm]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
	[[Category: Effector]]		[[Category: Effector]]
Line 32:		Line 24:
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:09:51 2009''

OCA at 15:09, 10 June 2009

OCA — Wed, 10 Jun 2009 15:09:53 GMT

←Older revision		Revision as of 15:09, 10 June 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3hfu.jpg\|left\|200px]]

-	The ~~entry 3hfu~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3hfu", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3hfu\| PDB=3hfu \| SCENE= }}

-	~~Authors: Singer, A.U., Evdokimova,~~ E.~~, Kagan, O., Dong, A., Edwards, A.M., Savchenko, A.~~	+	===Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide===

-	Description: Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~May 20 16~~:40:55 2009''	+	==About this Structure==
		+	3HFU is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HFU OCA].
		+	[[Category: Escherichia coli]]
		+	[[Category: Dong, A.]]
		+	[[Category: Edwards, A M.]]
		+	[[Category: Evdokimova, E.]]
		+	[[Category: Kagan, O.]]
		+	[[Category: Savchenko, A.]]
		+	[[Category: Singer, A U.]]
		+	[[Category: Activator]]
		+	[[Category: Azide]]
		+	[[Category: Cynr]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Dna-binding]]
		+	[[Category: Effector]]
		+	[[Category: Lysr transcriptional activiator]]
		+	[[Category: Repressor]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription regulation]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:09:51 2009''

OCA: New page: '''Unreleased structure''' The entry 3hfu is ON HOLD Authors: Singer, A.U., Evdokimova, E., Kagan, O., Dong, A., Edwards, A.M., Savchenko, A. Description: Crystal structure of the liga...

OCA — Wed, 20 May 2009 13:40:56 GMT

New page: '''Unreleased structure''' The entry 3hfu is ON HOLD Authors: Singer, A.U., Evdokimova, E., Kagan, O., Dong, A., Edwards, A.M., Savchenko, A. Description: Crystal structure of the liga...

New page

'''Unreleased structure'''

The entry 3hfu is ON HOLD

Authors: Singer, A.U., Evdokimova, E., Kagan, O., Dong, A., Edwards, A.M., Savchenko, A.

Description: Crystal structure of the ligand binding domain of E. coli CynR with its specific effector azide

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 20 16:40:55 2009''