3i72 - Revision history

OCA at 15:56, 1 November 2023

OCA — Wed, 01 Nov 2023 15:56:12 GMT

←Older revision		Revision as of 15:56, 1 November 2023
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	<StructureSection load='3i72' size='340' side='right'caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>		<StructureSection load='3i72' size='340' side='right'caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii~~ Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I72 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I72 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.47Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3i4l\|3i4l]], [[1vdz\|1vdz]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [https://pdbe.org/3i72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [https://www.ebi.ac.uk/pdbsum/3i72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i72 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [https://pdbe.org/3i72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [https://www.ebi.ac.uk/pdbsum/3i72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i72 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.	+	[https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Pyrococcus horikoshii]]	+	[[Category: Pyrococcus horikoshii OT3]]
-	[[Category: Balakrishna~~, A M~~]]	+	[[Category: Balakrishna AM]]
-	[[Category: Gruber, G]]	+	[[Category: Gruber G]]
-	[[Category: Kumar, A]]	+	[[Category: Kumar A]]
-	[[Category: Manimekalai~~, S M.S]]~~	+	[[Category: Manimekalai SMS]]
-	~~[[Category: Atp synthesis]]~~	+
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Autocatalytic cleavage]]~~	+
-	~~[[Category: Hydrogen ion transport]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Intron homing]]~~	+
-	~~[[Category: Ion transport]]~~	+
-	~~[[Category: Nuclease]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 07:46, 10 November 2021

OCA — Wed, 10 Nov 2021 07:46:13 GMT

←Older revision		Revision as of 07:46, 10 November 2021
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	==Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase==		==Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase==
-	<StructureSection load='3i72' size='340' side='right' caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>	+	<StructureSection load='3i72' size='340' side='right'caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3I72 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I72 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3i4l\|3i4l]], [[1vdz\|1vdz]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3i4l\|3i4l]], [[1vdz\|1vdz]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [~~http~~://pdbe.org/3i72 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3i72 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3i72 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [https://pdbe.org/3i72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [https://www.ebi.ac.uk/pdbsum/3i72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i72 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.	+	[[https://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/3i72_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/3i72_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:
	</div>		</div>
	<div class="pdbe-citations 3i72" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3i72" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[ATPase 3D structures\|ATPase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Balakrishna, A M]]		[[Category: Balakrishna, A M]]

OCA at 07:58, 1 November 2017

OCA — Wed, 01 Nov 2017 07:58:37 GMT

←Older revision		Revision as of 07:58, 1 November 2017
Line 31:		Line 31:
	</div>		</div>
	<div class="pdbe-citations 3i72" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3i72" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[ATPase\|ATPase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:28, 18 October 2016

OCA — Tue, 18 Oct 2016 07:28:07 GMT

←Older revision		Revision as of 07:28, 18 October 2016
Line 1:		Line 1:
		+
	==Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase==		==Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase==
	<StructureSection load='3i72' size='340' side='right' caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>		<StructureSection load='3i72' size='340' side='right' caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrho Pyrho~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I72 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I72 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3i4l\|3i4l]], [[1vdz\|1vdz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3i4l\|3i4l]], [[1vdz\|1vdz]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 ~~PYRHO~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [http://pdbe.org/3i72 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [http://www.ebi.ac.uk/pdbsum/3i72 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [http://pdbe.org/3i72 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [http://www.ebi.ac.uk/pdbsum/3i72 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3i72 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 37:		Line 38:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrho~~]]	+	[[Category: Pyrococcus horikoshii]]
	[[Category: Balakrishna, A M]]		[[Category: Balakrishna, A M]]
	[[Category: Gruber, G]]		[[Category: Gruber, G]]

OCA at 09:32, 9 February 2016

OCA — Tue, 09 Feb 2016 09:32:18 GMT

←Older revision		Revision as of 09:32, 9 February 2016
Line 7:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 PYRHO])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 PYRHO])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [http://www.ebi.ac.uk/pdbsum/3i72 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [http://pdbe.org/3i72 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [http://www.ebi.ac.uk/pdbsum/3i72 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i72 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3i72" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 21:34, 3 January 2015

OCA — Sat, 03 Jan 2015 21:34:35 GMT

←Older revision		Revision as of 21:34, 3 January 2015
Line 1:		Line 1:
-	~~{{STRUCTURE_3i72\| PDB=3i72 \| SCENE= }}~~	+	==Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase==
-	===Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase===	+	<StructureSection load='3i72' size='340' side='right' caption='[[3i72]], [[Resolution\|resolution]] 2.47Å' scene=''>
-	~~{{ABSTRACT_PUBMED_19944110}}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3i72]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrho Pyrho]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I72 FirstGlance]. <br>
-	==Function==	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3i4l\|3i4l]], [[1vdz\|1vdz]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">atpA, PH1975 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 PYRHO])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i72 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i72 RCSB], [http://www.ebi.ac.uk/pdbsum/3i72 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
	[[http://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.		[[http://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/3i72_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of the nucleotide-empty (A(E)), 5'-adenylyl-beta,gamma-imidodiphosphate (A(PNP))-bound, and ADP (A(DP))-bound forms of the catalytic A subunit of the energy producer A(1)A(O) ATP synthase from Pyrococcus horikoshii OT3 have been solved at 2.47 A and 2.4 A resolutions. The structures provide novel features of nucleotide binding and depict the residues involved in the catalysis of the A subunit. In the A(E) form, the phosphate analog SO(4)(2-) binds, via a water molecule, to the phosphate binding loop (P-loop) residue Ser238, which is also involved in the phosphate binding of ADP and 5'-adenylyl-beta,gamma-imidodiphosphate. Together with amino acids Gly234 and Phe236, the serine residue stabilizes the arched P-loop conformation of subunit A, as shown by the 2.4-A structure of the mutant protein S238A in which the P-loop flips into a relaxed state, comparable to the one in catalytic beta subunits of F(1)F(O) ATP synthases. Superposition of the existing P-loop structures of ATPases emphasizes the unique P-loop in subunit A, which is also discussed in the light of an evolutionary P-loop switch in related A(1)A(O) ATP synthases, F(1)F(O) ATP synthases, and vacuolar ATPases and implicates diverse catalytic mechanisms inside these biological motors.

-	~~==About this Structure==~~	+	Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.,Kumar A, Manimekalai MS, Balakrishna AM, Jeyakanthan J, Gruber G J Mol Biol. 2010 Feb 19;396(2):301-20. Epub 2009 Nov 26. PMID:19944110<ref>PMID:19944110</ref>
-	~~[[3i72]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrho Pyrho]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3I72 OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
-	*[[~~ATP synthase~~\|~~ATP synthase~~]]	+	*[[ATPase\|ATPase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:019944110</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pyrho]]		[[Category: Pyrho]]
-	[[Category: Balakrishna, A M.]]	+	[[Category: Balakrishna, A M]]
-	[[Category: Gruber, G.]]	+	[[Category: Gruber, G]]
-	[[Category: Kumar, A.]]	+	[[Category: Kumar, A]]
-	[[Category: Manimekalai, S M.S.]]	+	[[Category: Manimekalai, S M.S]]
	[[Category: Atp synthesis]]		[[Category: Atp synthesis]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]

OCA at 06:36, 13 November 2013

OCA — Wed, 13 Nov 2013 06:36:09 GMT

←Older revision		Revision as of 06:36, 13 November 2013
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-	[[Image:3i72.png\|left\|200px]]
-
	{{STRUCTURE_3i72\| PDB=3i72 \| SCENE= }}		{{STRUCTURE_3i72\| PDB=3i72 \| SCENE= }}
-
	===Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase===		===Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase===
		+	{{ABSTRACT_PUBMED_19944110}}

-	~~{{ABSTRACT_PUBMED_19944110}}~~	+	==Function==
		+	[[http://www.uniprot.org/uniprot/VATA_PYRHO VATA_PYRHO]] Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit.

	==About this Structure==		==About this Structure==
-	[[3i72]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA].	+	[[3i72]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrho Pyrho]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA].

	==See Also==		==See Also==
Line 14:		Line 13:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:019944110</ref><~~ref~~ group="xtra"~~>PMID:016627940<~~/~~ref~~><references ~~group="xtra"~~/>	+	<ref group="xtra">PMID:019944110</ref><references group="xtra"/><references/>
-	[[Category: ~~Pyrococcus horikoshii~~]]	+	[[Category: Pyrho]]
	[[Category: Balakrishna, A M.]]		[[Category: Balakrishna, A M.]]
	[[Category: Gruber, G.]]		[[Category: Gruber, G.]]

OCA at 13:25, 20 October 2012

OCA — Sat, 20 Oct 2012 13:25:43 GMT

←Older revision		Revision as of 13:25, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3i72]] is a 1 chain structure ~~of [[ATP synthase]]~~ with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA].	+	[[3i72]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I72 OCA].

	==See Also==		==See Also==

OCA at 11:55, 26 July 2012

OCA — Thu, 26 Jul 2012 11:55:19 GMT

←Older revision		Revision as of 11:55, 26 July 2012
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	[[Image:3i72.png\|left\|200px]]		[[Image:3i72.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3i72", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3i72\| PDB=3i72 \| SCENE= }}		{{STRUCTURE_3i72\| PDB=3i72 \| SCENE= }}

	===Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase===		===Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19944110}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19944110 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19944110}}		{{ABSTRACT_PUBMED_19944110}}

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	==See Also==		==See Also==
-	*[[ATP synthase]]	+	*[[ATP synthase\|ATP synthase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19944110~~</ref><ref group="xtra">PMID:~~16627940~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019944110</ref><ref group="xtra">PMID:016627940</ref><references group="xtra"/>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Balakrishna, A M.]]		[[Category: Balakrishna, A M.]]
Line 40:		Line 29:
	[[Category: Nuclease]]		[[Category: Nuclease]]
	[[Category: Nucleotide-binding]]		[[Category: Nucleotide-binding]]
-	[[Category: Protein splicing]]
	[[Category: Transport]]		[[Category: Transport]]

OCA: Protected "3i72" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 21:57:09 GMT

Protected "3i72" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:57, 14 March 2011