3i8n - Revision history

OCA at 11:00, 13 April 2022

OCA — Wed, 13 Apr 2022 11:00:54 GMT

←Older revision		Revision as of 11:00, 13 April 2022
Line 1:		Line 1:

	==A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.==		==A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.==
-	<StructureSection load='3i8n' size='340' side='right' caption='[[3i8n]], [[Resolution\|resolution]] 2.15Å' scene=''>	+	<StructureSection load='3i8n' size='340' side='right'caption='[[3i8n]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3i8n]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3I8N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3i8n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I8N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Vibrio parahaemolyticus, VP2912 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Vibrio parahaemolyticus, VP2912 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3i8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i8n OCA], [~~http~~://pdbe.org/3i8n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3i8n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3i8n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3i8n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i8n OCA], [https://pdbe.org/3i8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i8n RCSB], [https://www.ebi.ac.uk/pdbsum/3i8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i8n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Bearden, J]]		[[Category: Bearden, J]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 09:33, 19 December 2018

OCA — Wed, 19 Dec 2018 09:33:33 GMT

←Older revision		Revision as of 09:33, 19 December 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/3i8n_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/3i8n_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 22:38, 5 August 2016

OCA — Fri, 05 Aug 2016 22:38:04 GMT

←Older revision		Revision as of 22:38, 5 August 2016
Line 1:		Line 1:
		+
	==A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.==		==A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.==
	<StructureSection load='3i8n' size='340' side='right' caption='[[3i8n]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3i8n' size='340' side='right' caption='[[3i8n]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3i8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Vibrio_parahaemolyticus Vibrio parahaemolyticus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I8N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3i8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_parahaemolytica"_(fujino_et_al._1951)_miyamoto_et_al._1961 "oceanomonas parahaemolytica" (fujino et al. 1951) miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I8N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Vibrio parahaemolyticus, VP2912 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 ~~Vibrio parahaemolyticus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Vibrio parahaemolyticus, VP2912 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 "Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i8n RCSB], [http://www.ebi.ac.uk/pdbsum/3i8n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i8n OCA], [http://pdbe.org/3i8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3i8n RCSB], [http://www.ebi.ac.uk/pdbsum/3i8n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3i8n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i8n ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Vibrio parahaemolyticus]]
	[[Category: Bearden, J]]		[[Category: Bearden, J]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 06:29, 18 December 2014

OCA — Thu, 18 Dec 2014 06:29:04 GMT

←Older revision		Revision as of 06:29, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3i8n\| PDB=3i8n \| SCENE= }}~~	+	==A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.==
-	===A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.===	+	<StructureSection load='3i8n' size='340' side='right' caption='[[3i8n]], [[Resolution\|resolution]] 2.15Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3i8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I8N FirstGlance]. <br>
-	[[3i8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Vibrio parahaemolyticus, VP2912 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i8n RCSB], [http://www.ebi.ac.uk/pdbsum/3i8n PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/3i8n_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
-	[[Category: Bearden, J.]]	+	[[Category: Bearden, J]]
-	[[Category: Joachimiak, A~~.]]~~	+	[[Category: Joachimiak, A]]
-	~~[[Category: MCSG, Midwest Center for Structural Genomics.]]~~	+
-	~~[[Category: Tan, K.]]~~	+
-	~~[[Category: Tesar, C.]]~~	+
-	~~[[Category: Apc64273 1]]~~	+
-	~~[[Category: Mcsg.]]~~	+
-	~~[[Category: Midwest center for structural genomic]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Tan, K]]
		+	[[Category: Tesar, C]]
		+	[[Category: Apc64273 1]]
		+	[[Category: Mcsg]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Vibrio parahaemolyticus rimd 2210633]]		[[Category: Vibrio parahaemolyticus rimd 2210633]]

OCA: Protected "3i8n" [edit=sysop:move=sysop]

OCA — Wed, 13 Mar 2013 11:01:48 GMT

Protected "3i8n" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:01, 13 March 2013

OCA at 11:01, 13 March 2013

OCA — Wed, 13 Mar 2013 11:01:46 GMT

←Older revision		Revision as of 11:01, 13 March 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3i8n.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3i8n", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3i8n\| PDB=3i8n \| SCENE= }}		{{STRUCTURE_3i8n\| PDB=3i8n \| SCENE= }}
-
	===A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.===		===A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.===
-

	==About this Structure==		==About this Structure==
-	~~3I8N~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA].	+	[[3i8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA].
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Bearden, J.]]		[[Category: Bearden, J.]]
Line 29:		Line 18:
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Vibrio parahaemolyticus rimd 2210633]]		[[Category: Vibrio parahaemolyticus rimd 2210633]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 16:15:08 2009''

OCA at 13:15, 3 September 2009

OCA — Thu, 03 Sep 2009 13:15:10 GMT

←Older revision		Revision as of 13:15, 3 September 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3i8n.jpg\|left\|200px]]

-	The ~~entry 3i8n~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3i8n", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3i8n\| PDB=3i8n \| SCENE= }}

-	~~Authors: Tan, K., Tesar, C., Bearden, J., Joachimiak,~~ A.~~, Midwest Center for Structural Genomics (MCSG)~~	+	===A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.===

-	Description: A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 22 20~~:35:14 2009''	+	==About this Structure==
		+	3I8N is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I8N OCA].
		+	[[Category: Vibrio parahaemolyticus]]
		+	[[Category: Bearden, J.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Tan, K.]]
		+	[[Category: Tesar, C.]]
		+	[[Category: Apc64273 1]]
		+	[[Category: Mcsg.]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]
		+	[[Category: Unknown function]]
		+	[[Category: Vibrio parahaemolyticus rimd 2210633]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 16:15:08 2009''

OCA at 17:35, 22 July 2009

OCA — Wed, 22 Jul 2009 17:35:14 GMT

←Older revision		Revision as of 17:35, 22 July 2009
Line 3:		Line 3:
	The entry 3i8n is ON HOLD		The entry 3i8n is ON HOLD

-	Authors: Tan, K., Tesar, C., Bearden, J., Joachimiak, A.	+	Authors: Tan, K., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

	Description: A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.		Description: A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul ~~15 08~~:31:09 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 22 20:35:14 2009''

OCA: New page: '''Unreleased structure''' The entry 3i8n is ON HOLD Authors: Tan, K., Tesar, C., Bearden, J., Joachimiak, A. Description: A domain of a conserved functionally known protein from Vibri...

OCA — Wed, 15 Jul 2009 05:31:10 GMT

New page: '''Unreleased structure''' The entry 3i8n is ON HOLD Authors: Tan, K., Tesar, C., Bearden, J., Joachimiak, A. Description: A domain of a conserved functionally known protein from Vibri...

New page

'''Unreleased structure'''

The entry 3i8n is ON HOLD

Authors: Tan, K., Tesar, C., Bearden, J., Joachimiak, A.

Description: A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 15 08:31:09 2009''