3igi - Revision history

OCA at 07:47, 6 September 2023

OCA — Wed, 06 Sep 2023 07:47:33 GMT

←Older revision		Revision as of 07:47, 6 September 2023
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	<StructureSection load='3igi' size='340' side='right'caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>		<StructureSection load='3igi' size='340' side='right'caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oceanobacillus_iheyensis Oceanobacillus iheyensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.125Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [https://pdbe.org/3igi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [https://www.ebi.ac.uk/pdbsum/3igi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [https://pdbe.org/3igi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [https://www.ebi.ac.uk/pdbsum/3igi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fedorova, O]]	+	[[Category: Oceanobacillus iheyensis]]
-	[[Category: Keating~~, K S~~]]	+	[[Category: Fedorova O]]
-	[[Category: Pyle~~, A M~~]]	+	[[Category: Keating KS]]
-	[[Category: Rajashankar, K]]	+	[[Category: Pyle AM]]
-	[[Category: Toor, N]]	+	[[Category: Rajashankar K]]
-	[[Category: Wang, J]]	+	[[Category: Toor N]]
-	~~[[Category: Exon]]~~	+	[[Category: Wang J]]
-	~~[[Category: Group ii]]~~	+
-	~~[[Category: Intron]]~~	+
-	~~[[Category: Ribonucleic acid]]~~	+
-	~~[[Category: Rna~~]]	+

OCA at 07:46, 29 June 2022

OCA — Wed, 29 Jun 2022 07:46:10 GMT

←Older revision		Revision as of 07:46, 29 June 2022
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	<StructureSection load='3igi' size='340' side='right'caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>		<StructureSection load='3igi' size='340' side='right'caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3IGI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IGI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [~~http~~://pdbe.org/3igi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3igi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [https://pdbe.org/3igi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [https://www.ebi.ac.uk/pdbsum/3igi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:55, 23 September 2020

OCA — Wed, 23 Sep 2020 11:55:54 GMT

←Older revision		Revision as of 11:55, 23 September 2020
Line 1:		Line 1:

	==Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron==		==Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron==
-	<StructureSection load='3igi' size='340' side='right' caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>	+	<StructureSection load='3igi' size='340' side='right'caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3IGI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3IGI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [http://pdbe.org/3igi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [http://www.ebi.ac.uk/pdbsum/3igi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [http://pdbe.org/3igi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [http://www.ebi.ac.uk/pdbsum/3igi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Fedorova, O]]		[[Category: Fedorova, O]]
	[[Category: Keating, K S]]		[[Category: Keating, K S]]

OCA at 20:27, 4 August 2016

OCA — Thu, 04 Aug 2016 20:27:03 GMT

←Older revision		Revision as of 20:27, 4 August 2016
Line 1:		Line 1:
		+
	==Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron==		==Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron==
	<StructureSection load='3igi' size='340' side='right' caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>		<StructureSection load='3igi' size='340' side='right' caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IGI FirstGlance]. <br>		<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IGI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [http://www.ebi.ac.uk/pdbsum/3igi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [http://pdbe.org/3igi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [http://www.ebi.ac.uk/pdbsum/3igi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3igi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3igi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:37, 18 December 2014

OCA — Thu, 18 Dec 2014 17:37:58 GMT

←Older revision		Revision as of 17:37, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3igi\| PDB=3igi \| SCENE= }}~~	+	==Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron==
-	===Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron===	+	<StructureSection load='3igi' size='340' side='right' caption='[[3igi]], [[Resolution\|resolution]] 3.12Å' scene=''>
-	~~{{ABSTRACT_PUBMED_19952115}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IGI FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3igi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3igi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3igi RCSB], [http://www.ebi.ac.uk/pdbsum/3igi PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Group II introns are large ribozymes that act as self-splicing and retrotransposable RNA molecules. They are of great interest because of their potential evolutionary relationship to the eukaryotic spliceosome, their continued influence on the organization of many genomes in bacteria and eukaryotes, and their potential utility as tools for gene therapy and biotechnology. One of the most interesting features of group II introns is their relative lack of nucleobase conservation and covariation, which has long suggested that group II intron structures are stabilized by numerous unusual tertiary interactions and backbone-mediated contacts. Here, we provide a detailed description of the tertiary interaction networks within the Oceanobacillus iheyensis group IIC intron, for which a crystal structure was recently solved to 3.1 A resolution. The structure can be described as a set of several intricately constructed tertiary interaction nodes, each of which contains a core of extended stacking networks and elaborate motifs. Many of these nodes are surrounded by a web of ribose zippers, which appear to further stabilize local structure. As predicted from biochemical and genetic studies, the group II intron provides a wealth of new information on strategies for RNA folding and tertiary structural organization.

-	~~==About this Structure==~~	+	Tertiary architecture of the Oceanobacillus iheyensis group II intron.,Toor N, Keating KS, Fedorova O, Rajashankar K, Wang J, Pyle AM RNA. 2010 Jan;16(1):57-69. Epub 2009 Dec 1. PMID:19952115<ref>PMID:19952115</ref>
-	~~[[3igi]] is a 2 chain structure~~. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=3IGI OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:019952115</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Fedorova, O.]]	+	== References ==
-	[[Category: Keating, K S.]]	+	<references/>
-	[[Category: Pyle, A M.]]	+	__TOC__
-	[[Category: Rajashankar, K.]]	+	</StructureSection>
-	[[Category: Toor, N.]]	+	[[Category: Fedorova, O]]
-	[[Category: Wang, J.]]	+	[[Category: Keating, K S]]
		+	[[Category: Pyle, A M]]
		+	[[Category: Rajashankar, K]]
		+	[[Category: Toor, N]]
		+	[[Category: Wang, J]]
	[[Category: Exon]]		[[Category: Exon]]
	[[Category: Group ii]]		[[Category: Group ii]]

OCA at 06:50, 29 September 2013

OCA — Sun, 29 Sep 2013 06:50:21 GMT

←Older revision		Revision as of 06:50, 29 September 2013
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	==Reference==		==Reference==
-	<ref group="xtra">PMID:019952115</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019952115</ref><references group="xtra"/><references/>
	[[Category: Fedorova, O.]]		[[Category: Fedorova, O.]]
	[[Category: Keating, K S.]]		[[Category: Keating, K S.]]

OCA: Protected "3igi" [edit=sysop:move=sysop]

OCA — Wed, 13 Mar 2013 11:07:36 GMT

Protected "3igi" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:07, 13 March 2013

OCA at 11:07, 13 March 2013

OCA — Wed, 13 Mar 2013 11:07:34 GMT

←Older revision		Revision as of 11:07, 13 March 2013
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-	{{Seed}}
-	[[Image:3igi.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3igi", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3igi\| PDB=3igi \| SCENE= }}		{{STRUCTURE_3igi\| PDB=3igi \| SCENE= }}
-
	===Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron===		===Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19952115}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19952115 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19952115}}		{{ABSTRACT_PUBMED_19952115}}

	==About this Structure==		==About this Structure==
-	~~3IGI~~ is a 2 ~~chains~~ structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA].	+	[[3igi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IGI OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19952115~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019952115</ref><references group="xtra"/>
	[[Category: Fedorova, O.]]		[[Category: Fedorova, O.]]
	[[Category: Keating, K S.]]		[[Category: Keating, K S.]]
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	[[Category: Ribonucleic acid]]		[[Category: Ribonucleic acid]]
	[[Category: Rna]]		[[Category: Rna]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 13 12:57:54 2010''

OCA at 10:57, 13 January 2010

OCA — Wed, 13 Jan 2010 10:57:54 GMT

←Older revision		Revision as of 10:57, 13 January 2010
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	{{Seed}}		{{Seed}}
-	[[Image:3igi.~~jpg~~\|left\|200px]]	+	[[Image:3igi.png\|left\|200px]]

	<!--		<!--
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	[[Category: Rna]]		[[Category: Rna]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Dec 24 07~~:36:~~08 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 13 12:57:54 2010''

OCA at 05:36, 24 December 2009

OCA — Thu, 24 Dec 2009 05:36:09 GMT

←Older revision		Revision as of 05:36, 24 December 2009
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	===Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron===		===Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19952115}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19952115 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19952115}}

	==About this Structure==		==About this Structure==
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	[[Category: Rna]]		[[Category: Rna]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed~~ Dec ~~23 09~~:54:15 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Dec 24 07:36:08 2009''