3iq0 - Revision history

OCA at 03:38, 21 April 2022

OCA — Thu, 21 Apr 2022 03:38:44 GMT

←Older revision		Revision as of 03:38, 21 April 2022
Line 1:		Line 1:

	==Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli==		==Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli==
-	<StructureSection load='3iq0' size='340' side='right' caption='[[3iq0]]~~, [[Resolution\|resolution]] 1.79Å~~' scene=''>	+	<StructureSection load='3iq0' size='340' side='right'caption='[[3iq0]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[3iq0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3IQ0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IQ0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iq0 OCA], [https://pdbe.org/3iq0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iq0 RCSB], [https://www.ebi.ac.uk/pdbsum/3iq0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iq0 ProSAT]</span></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3h49\|3h49]], [[3in1\|3in1]], [[3i3y\|3i3y]], [[3ikh\|3ikh]], [[3hic\|3hic]], [[3ie7\|3ie7]]</td></tr>	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">1040397, c4014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=217992 Escherichia coli O6])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3iq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iq0 OCA], [~~http~~://pdbe.org/3iq0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3iq0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3iq0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3iq0 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli o6~~]]	+	[[Category: Large Structures]]
-	[[Category: Burley~~, S K]]~~	+	[[Category: Burley SK]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Satyanarayana L]]
-	[[Category: Satyanarayana, L]]	+	[[Category: Swaminathan S]]
-	[[Category: Swaminathan, S]]	+
-	~~[[Category: D-ribose metabolic process]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Pfkb family]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Ribokinase]]~~	+
-	~~[[Category: Ribose]]~~	+
-	~~[[Category: Sad]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 10:03, 19 December 2018

OCA — Wed, 19 Dec 2018 10:03:01 GMT

←Older revision		Revision as of 10:03, 19 December 2018
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iq/3iq0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iq/3iq0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:19, 11 August 2016

OCA — Thu, 11 Aug 2016 19:19:40 GMT

←Older revision		Revision as of 19:19, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli==		==Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli==
	<StructureSection load='3iq0' size='340' side='right' caption='[[3iq0]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='3iq0' size='340' side='right' caption='[[3iq0]], [[Resolution\|resolution]] 1.79Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3h49\|3h49]], [[3in1\|3in1]], [[3i3y\|3i3y]], [[3ikh\|3ikh]], [[3hic\|3hic]], [[3ie7\|3ie7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3h49\|3h49]], [[3in1\|3in1]], [[3i3y\|3i3y]], [[3ikh\|3ikh]], [[3hic\|3hic]], [[3ie7\|3ie7]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">1040397, c4014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=217992 Escherichia coli O6])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">1040397, c4014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=217992 Escherichia coli O6])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iq0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3iq0 RCSB], [http://www.ebi.ac.uk/pdbsum/3iq0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iq0 OCA], [http://pdbe.org/3iq0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3iq0 RCSB], [http://www.ebi.ac.uk/pdbsum/3iq0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3iq0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iq0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 13:47, 6 November 2014

OCA — Thu, 06 Nov 2014 13:47:20 GMT

←Older revision		Revision as of 13:47, 6 November 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3iq0\| PDB=3iq0 \| SCENE= }}~~	+	==Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli==
-	===Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli===	+	<StructureSection load='3iq0' size='340' side='right' caption='[[3iq0]], [[Resolution\|resolution]] 1.79Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3iq0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IQ0 FirstGlance]. <br>
-	[[3iq0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3h49\|3h49]], [[3in1\|3in1]], [[3i3y\|3i3y]], [[3ikh\|3ikh]], [[3hic\|3hic]], [[3ie7\|3ie7]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">1040397, c4014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=217992 Escherichia coli O6])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iq0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iq0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3iq0 RCSB], [http://www.ebi.ac.uk/pdbsum/3iq0 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iq/3iq0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli o6]]		[[Category: Escherichia coli o6]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Satyanarayana, L.]]	+	[[Category: Satyanarayana, L]]
-	[[Category: Swaminathan, S~~.]]~~	+	[[Category: Swaminathan, S]]
-	~~[[Category: 11206g~~]]	+
	[[Category: D-ribose metabolic process]]		[[Category: D-ribose metabolic process]]
	[[Category: Kinase]]		[[Category: Kinase]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+
	[[Category: Pfkb family]]		[[Category: Pfkb family]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-ii~~]]	+
	[[Category: Ribokinase]]		[[Category: Ribokinase]]
	[[Category: Ribose]]		[[Category: Ribose]]
	[[Category: Sad]]		[[Category: Sad]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 09:30, 27 March 2013

OCA — Wed, 27 Mar 2013 09:30:48 GMT

←Older revision		Revision as of 09:30, 27 March 2013
Line 1:		Line 1:
-	[[Image:3iq0.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3iq0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3iq0\| PDB=3iq0 \| SCENE= }}		{{STRUCTURE_3iq0\| PDB=3iq0 \| SCENE= }}
-
	===Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli===		===Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli===
-

	==About this Structure==		==About this Structure==
Line 19:		Line 9:
	[[Category: Satyanarayana, L.]]		[[Category: Satyanarayana, L.]]
	[[Category: Swaminathan, S.]]		[[Category: Swaminathan, S.]]
		+	[[Category: 11206g]]
		+	[[Category: D-ribose metabolic process]]
		+	[[Category: Kinase]]
		+	[[Category: New york sgx research center for structural genomic]]
		+	[[Category: Nysgxrc]]
		+	[[Category: Pfkb family]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-ii]]
		+	[[Category: Ribokinase]]
		+	[[Category: Ribose]]
		+	[[Category: Sad]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transferase]]

OCA: Protected "3iq0" [edit=sysop:move=sysop]

OCA — Wed, 09 Feb 2011 05:27:50 GMT

Protected "3iq0" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:27, 9 February 2011

OCA at 05:27, 9 February 2011

OCA — Wed, 09 Feb 2011 05:27:49 GMT

←Older revision		Revision as of 05:27, 9 February 2011
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3iq0.png\|left\|200px]]
-	[[Image:3iq0.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 14:		Line 13:

	==About this Structure==		==About this Structure==
-	~~3IQ0~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA].	+	[[3iq0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA].
	[[Category: Escherichia coli o6]]		[[Category: Escherichia coli o6]]
-	[[Category: Burley,S K.]]	+	[[Category: Burley, S K.]]
	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
-	[[Category: Satyanarayana,L.]]	+	[[Category: Satyanarayana, L.]]
-	[[Category: Swaminathan,S.]]	+	[[Category: Swaminathan, S.]]
-	~~[[Category: 11206g]]~~	+
-	~~[[Category: D-ribose metabolic process]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Pfkb family]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi-ii]]~~	+
-	~~[[Category: Ribokinase]]~~	+
-	~~[[Category: Ribose]]~~	+
-	~~[[Category: Sad]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Transferase]]~~	+
-		+
-	~~''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 09:52:59 2009''~~	+

OCA at 06:53, 9 September 2009

OCA — Wed, 09 Sep 2009 06:53:00 GMT

←Older revision		Revision as of 06:53, 9 September 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3iq0.jpg\|left\|200px]]

-	The ~~entry 3iq0~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3iq0", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3iq0\| PDB=3iq0 \| SCENE= }}

-	~~Authors: Satyanarayana,L~~.~~, Burley,S.K., Swaminathan,S., New York SGX Research Center for Structural Genomics (NYSGXRC)~~	+	===Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli===

-	Description: Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu~~ Sep ~~3 15~~:22:41 2009''	+	==About this Structure==
		+	3IQ0 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli_o6 Escherichia coli o6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IQ0 OCA].
		+	[[Category: Escherichia coli o6]]
		+	[[Category: Burley,S K.]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
		+	[[Category: Satyanarayana,L.]]
		+	[[Category: Swaminathan,S.]]
		+	[[Category: 11206g]]
		+	[[Category: D-ribose metabolic process]]
		+	[[Category: Kinase]]
		+	[[Category: New york sgx research center for structural genomic]]
		+	[[Category: Nysgxrc]]
		+	[[Category: Pfkb family]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-ii]]
		+	[[Category: Ribokinase]]
		+	[[Category: Ribose]]
		+	[[Category: Sad]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 9 09:52:59 2009''

OCA: New page: '''Unreleased structure''' The entry 3iq0 is ON HOLD Authors: Satyanarayana,L., Burley,S.K., Swaminathan,S., New York SGX Research Center for Structural Genomics (NYSGXRC) Description:...

OCA — Thu, 03 Sep 2009 12:22:42 GMT

New page: '''Unreleased structure''' The entry 3iq0 is ON HOLD Authors: Satyanarayana,L., Burley,S.K., Swaminathan,S., New York SGX Research Center for Structural Genomics (NYSGXRC) Description:...

New page

'''Unreleased structure'''

The entry 3iq0 is ON HOLD

Authors: Satyanarayana,L., Burley,S.K., Swaminathan,S., New York SGX Research Center for Structural Genomics (NYSGXRC)

Description: Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 15:22:41 2009''