3ira - Revision history

OCA at 03:39, 21 April 2022

OCA — Thu, 21 Apr 2022 03:39:39 GMT

←Older revision		Revision as of 03:39, 21 April 2022
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	==The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1==		==The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1==
-	<StructureSection load='3ira' size='340' side='right' caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3ira' size='340' side='right'caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Metma Metma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3IRA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Metma Metma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IRA FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192952 METMA])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192952 METMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [~~http~~://pdbe.org/3ira PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ira PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ira ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [https://pdbe.org/3ira PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [https://www.ebi.ac.uk/pdbsum/3ira PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ira ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Metma]]		[[Category: Metma]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 09:37, 19 December 2018

OCA — Wed, 19 Dec 2018 09:37:20 GMT

←Older revision		Revision as of 09:37, 19 December 2018
Line 1:		Line 1:
		+
	==The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1==		==The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1==
	<StructureSection load='3ira' size='340' side='right' caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3ira' size='340' side='right' caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metma Metma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IRA FirstGlance]. <br>		<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metma Metma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IRA FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192952 METMA])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192952 METMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [http://pdbe.org/3ira PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [http://www.ebi.ac.uk/pdbsum/3ira PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [http://pdbe.org/3ira PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [http://www.ebi.ac.uk/pdbsum/3ira PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ira ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ira_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ira_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 02:31, 8 February 2016

OCA — Mon, 08 Feb 2016 02:31:47 GMT

←Older revision		Revision as of 02:31, 8 February 2016
Line 2:		Line 2:
	<StructureSection load='3ira' size='340' side='right' caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3ira' size='340' side='right' caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanosarcina_mazei Methanosarcina mazei~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IRA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metma Metma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IRA FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~2209 Methanosarcina mazei~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192952 METMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [http://www.ebi.ac.uk/pdbsum/3ira PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [http://pdbe.org/3ira PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [http://www.ebi.ac.uk/pdbsum/3ira PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ira ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanosarcina mazei~~]]	+	[[Category: Metma]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]
	[[Category: Keigher, L]]		[[Category: Keigher, L]]
Line 26:		Line 26:
	[[Category: Conserved protein]]		[[Category: Conserved protein]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
		+	[[Category: Methanosarcina mazei]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 15:04, 18 December 2014

OCA — Thu, 18 Dec 2014 15:04:57 GMT

←Older revision		Revision as of 15:04, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3ira\| PDB=3ira \| SCENE= }}~~	+	==The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1==
-	===The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1===	+	<StructureSection load='3ira' size='340' side='right' caption='[[3ira]], [[Resolution\|resolution]] 2.10Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IRA FirstGlance]. <br>
-	[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GI:20905010, MM_0619 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2209 Methanosarcina mazei])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ira FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ira OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ira RCSB], [http://www.ebi.ac.uk/pdbsum/3ira PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ir/3ira_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Methanosarcina mazei]]		[[Category: Methanosarcina mazei]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Keigher, L.]]	+	[[Category: Keigher, L]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Wu, R.]]	+	[[Category: Wu, R]]
-	[[Category: Zhang, R.]]	+	[[Category: Zhang, R]]
	[[Category: Conserved protein]]		[[Category: Conserved protein]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Methanosarcina mazei]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Midwest center for structural genomic]]~~	+
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "3ira" [edit=sysop:move=sysop]

OCA — Wed, 27 Mar 2013 09:37:33 GMT

Protected "3ira" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:37, 27 March 2013

OCA at 09:37, 27 March 2013

OCA — Wed, 27 Mar 2013 09:37:31 GMT

←Older revision		Revision as of 09:37, 27 March 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3ira.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ira", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ira\| PDB=3ira \| SCENE= }}		{{STRUCTURE_3ira\| PDB=3ira \| SCENE= }}
-
	===The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1===		===The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1===
-

	==About this Structure==		==About this Structure==
-	~~3IRA~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanosarcina_mazei_go1~~ Methanosarcina mazei ~~go1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].	+	[[3ira]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].
-	[[Category: Methanosarcina mazei ~~go1~~]]	+	[[Category: Methanosarcina mazei]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
	[[Category: Keigher, L.]]		[[Category: Keigher, L.]]
Line 29:		Line 18:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 15:01:25 2010''

OCA at 13:01, 28 January 2010

OCA — Thu, 28 Jan 2010 13:01:26 GMT

←Older revision		Revision as of 13:01, 28 January 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3ira.~~jpg~~\|left\|200px]]	+	[[Image:3ira.png\|left\|200px]]

	<!--		<!--
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3IRA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei_go1 Methanosarcina mazei go1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].	+	3IRA is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei_go1 Methanosarcina mazei go1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].
	[[Category: Methanosarcina mazei go1]]		[[Category: Methanosarcina mazei go1]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
Line 30:		Line 30:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Oct 21 10~~:39:~~19 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 15:01:25 2010''

OCA at 08:39, 21 October 2009

OCA — Wed, 21 Oct 2009 08:39:21 GMT

←Older revision		Revision as of 08:39, 21 October 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3ira.jpg\|left\|200px]]

-	The ~~entry 3ira~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3ira", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3ira\| PDB=3ira \| SCENE= }}

-	~~Authors: Zhang, R., Wu, R., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)~~	+	===The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1===

-	Description: The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Thu Sep 3 15~~:23:08 2009''	+	==About this Structure==
		+	3IRA is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei_go1 Methanosarcina mazei go1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IRA OCA].
		+	[[Category: Methanosarcina mazei go1]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: Keigher, L.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Wu, R.]]
		+	[[Category: Zhang, R.]]
		+	[[Category: Conserved protein]]
		+	[[Category: Mcsg]]
		+	[[Category: Methanosarcina mazei]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi]]
		+	[[Category: Structural genomic]]
		+	[[Category: Unknown function]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 21 10:39:19 2009''

OCA: New page: '''Unreleased structure''' The entry 3ira is ON HOLD Authors: Zhang, R., Wu, R., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: The crystal str...

OCA — Thu, 03 Sep 2009 12:23:08 GMT

New page: '''Unreleased structure''' The entry 3ira is ON HOLD Authors: Zhang, R., Wu, R., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG) Description: The crystal str...

New page

'''Unreleased structure'''

The entry 3ira is ON HOLD

Authors: Zhang, R., Wu, R., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Description: The crystal structure of one domain of the conserved protein from Methanosarcina mazei Go1

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Sep 3 15:23:08 2009''