3ju2 - Revision history

OCA at 10:13, 21 February 2024

OCA — Wed, 21 Feb 2024 10:13:20 GMT

←Older revision		Revision as of 10:13, 21 February 2024
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021==		==CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021==
-	<StructureSection load='3ju2' size='340' side='right' caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3ju2' size='340' side='right'caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ju2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_9930 Atcc 9930~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3JU2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ju2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JU2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~>, ~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~R00122, SMc04130 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=382 ATCC 9930])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [~~http~~://pdbe.org/3ju2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3ju2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3ju2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [https://pdbe.org/3ju2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ju2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ju2 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q92T58_RHIME Q92T58_RHIME]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 9930~~]]	+	[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Sinorhizobium meliloti]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Almo SC]]
-	[[Category: Foti, R]]	+	[[Category: Burley SK]]
-	[[Category: Freeman, J]]	+	[[Category: Foti R]]
-	[[Category: Malashkevich, V]]	+	[[Category: Freeman J]]
-	[[Category: Miller, S]]	+	[[Category: Malashkevich V]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Miller S]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Patskovsky Y]]
-	[[Category: Ramagopal, U]]	+	[[Category: Ramagopal U]]
-	[[Category: Raushel~~, F M~~]]	+	[[Category: Raushel FM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Sauder JM]]
-	[[Category: Toro, R]]	+	[[Category: Toro R]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Tim barrel protein]]~~	+
-	~~[[Category: Uncharacterized protein]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Zn binding domain~~]]	+

OCA at 09:38, 26 December 2018

OCA — Wed, 26 Dec 2018 09:38:48 GMT

←Older revision		Revision as of 09:38, 26 December 2018
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		+
	==CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021==		==CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021==
	<StructureSection load='3ju2' size='340' side='right' caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3ju2' size='340' side='right' caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">R00122, SMc04130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ATCC 9930])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">R00122, SMc04130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ATCC 9930])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [http://pdbe.org/3ju2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ju2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [http://pdbe.org/3ju2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ju2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ju2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ju/3ju2_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ju/3ju2_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 21:35, 7 February 2016

OCA — Sun, 07 Feb 2016 21:35:13 GMT

←Older revision		Revision as of 21:35, 7 February 2016
Line 2:		Line 2:
	<StructureSection load='3ju2' size='340' side='right' caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3ju2' size='340' side='right' caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3ju2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sinorhizobium_meliloti Sinorhizobium meliloti~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JU2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3ju2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_9930 Atcc 9930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JU2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">R00122, SMc04130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ~~Sinorhizobium meliloti~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">R00122, SMc04130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ATCC 9930])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ju2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [http://pdbe.org/3ju2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ju2 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ju2 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sinorhizobium meliloti~~]]	+	[[Category: Atcc 9930]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 13:49, 6 November 2014

OCA — Thu, 06 Nov 2014 13:49:21 GMT

←Older revision		Revision as of 13:49, 6 November 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3ju2\| PDB=3ju2 \| SCENE= }}~~	+	==CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021==
-	===CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021===	+	<StructureSection load='3ju2' size='340' side='right' caption='[[3ju2]], [[Resolution\|resolution]] 1.80Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3ju2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JU2 FirstGlance]. <br>
-	[[3ju2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">R00122, SMc04130 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 Sinorhizobium meliloti])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ju2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ju2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ju2 RCSB], [http://www.ebi.ac.uk/pdbsum/3ju2 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ju/3ju2_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Sinorhizobium meliloti]]		[[Category: Sinorhizobium meliloti]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Foti, R.]]	+	[[Category: Foti, R]]
-	[[Category: Freeman, J.]]	+	[[Category: Freeman, J]]
-	[[Category: Malashkevich, V.]]	+	[[Category: Malashkevich, V]]
-	[[Category: Miller, S~~.]]~~	+	[[Category: Miller, S]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Patskovsky, Y.]]~~	+
-	~~[[Category: Ramagopal, U.]]~~	+
-	~~[[Category: Raushel, F M.]]~~	+
-	~~[[Category: Sauder, J M.]]~~	+
-	~~[[Category: Toro, R.]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi-2~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Patskovsky, Y]]
		+	[[Category: Ramagopal, U]]
		+	[[Category: Raushel, F M]]
		+	[[Category: Sauder, J M]]
		+	[[Category: Toro, R]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Tim barrel protein]]		[[Category: Tim barrel protein]]
	[[Category: Uncharacterized protein]]		[[Category: Uncharacterized protein]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Zn binding domain]]		[[Category: Zn binding domain]]

OCA: Protected "3ju2" [edit=sysop:move=sysop]

OCA — Wed, 27 Mar 2013 09:34:20 GMT

Protected "3ju2" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:34, 27 March 2013

OCA at 09:34, 27 March 2013

OCA — Wed, 27 Mar 2013 09:34:15 GMT

←Older revision		Revision as of 09:34, 27 March 2013
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-	{{Seed}}
-	[[Image:3ju2.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3ju2", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3ju2\| PDB=3ju2 \| SCENE= }}		{{STRUCTURE_3ju2\| PDB=3ju2 \| SCENE= }}
-
	===CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021===		===CRYSTAL STRUCTURE OF PROTEIN SMc04130 FROM Sinorhizobium meliloti 1021===
-

	==About this Structure==		==About this Structure==
-	~~3JU2~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA].	+	[[3ju2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JU2 OCA].
	[[Category: Sinorhizobium meliloti]]		[[Category: Sinorhizobium meliloti]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
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	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Zn binding domain]]		[[Category: Zn binding domain]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 23 09:05:07 2009''

OCA: New page: {{Seed}} 200px