3jxz - Revision history

OCA at 08:06, 6 September 2023

OCA — Wed, 06 Sep 2023 08:06:04 GMT

←Older revision		Revision as of 08:06, 6 September 2023
Line 1:		Line 1:

	==Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)==		==Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)==
-	<StructureSection load='3jxz' size='340' side='right' caption='[[3jxz]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='3jxz' size='340' side='right'caption='[[3jxz]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3jxz]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bacc1 Bacc1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3JXZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3jxz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_10987 Bacillus cereus ATCC 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JXZ FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bvs\|3bvs]]~~, [[~~3jx7~~\|~~3jx7]], [[3jxy\|3jxy]], [[3jy1\|3jy1~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~AlkD, BC_4913 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=5~~&id=222523 BACC1])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jxz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jxz OCA], [https://pdbe.org/3jxz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jxz RCSB], [https://www.ebi.ac.uk/pdbsum/3jxz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jxz ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3jxz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jxz OCA], [~~http~~://pdbe.org/3jxz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3jxz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3jxz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3jxz ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q816E8_BACCR Q816E8_BACCR]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 31:

	==See Also==		==See Also==
-	*[[DNA glycosylase\|DNA glycosylase]]	+	*[[DNA glycosylase 3D structures\|DNA glycosylase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacc1~~]]	+	[[Category: Bacillus cereus ATCC 10987]]
-	[[Category: ~~Eichman, B F~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Rubinson, E H~~]]	+	[[Category: Eichman BF]]
-	[[Category: ~~Dna alkylation]]~~	+	[[Category: Rubinson EH]]
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Dna glycosylase]]~~	+
-	~~[[Category: Heat repeat]]~~	+
-	~~[[Category: Hydrolase-dna complex]]~~	+
-	~~[[Category: Lyase-dna complex~~]]	+

OCA at 09:29, 26 December 2018

OCA — Wed, 26 Dec 2018 09:29:36 GMT

←Older revision		Revision as of 09:29, 26 December 2018
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/3jxz_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/3jxz_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:14, 11 August 2016

OCA — Thu, 11 Aug 2016 18:14:16 GMT

←Older revision		Revision as of 18:14, 11 August 2016
Line 1:		Line 1:
		+
	==Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)==		==Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)==
	<StructureSection load='3jxz' size='340' side='right' caption='[[3jxz]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='3jxz' size='340' side='right' caption='[[3jxz]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3jxz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_cereus Bacillus cereus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JXZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3jxz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacc1 Bacc1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JXZ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bvs\|3bvs]], [[3jx7\|3jx7]], [[3jxy\|3jxy]], [[3jy1\|3jy1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bvs\|3bvs]], [[3jx7\|3jx7]], [[3jxy\|3jxy]], [[3jy1\|3jy1]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AlkD, BC_4913 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1396 Bacillus cereus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AlkD, BC_4913 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=222523 BACC1])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jxz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jxz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3jxz RCSB], [http://www.ebi.ac.uk/pdbsum/3jxz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jxz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jxz OCA], [http://pdbe.org/3jxz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jxz RCSB], [http://www.ebi.ac.uk/pdbsum/3jxz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jxz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jxz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3jxz" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus cereus~~]]	+	[[Category: Bacc1]]
	[[Category: Eichman, B F]]		[[Category: Eichman, B F]]
	[[Category: Rubinson, E H]]		[[Category: Rubinson, E H]]

OCA at 14:45, 5 January 2015

OCA — Mon, 05 Jan 2015 14:45:30 GMT

←Older revision		Revision as of 14:45, 5 January 2015
Line 1:		Line 1:
-	[[~~Image:~~3jxz.~~png~~\|~~left~~\|200px]]	+	==Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)==
		+	<StructureSection load='3jxz' size='340' side='right' caption='[[3jxz]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3jxz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JXZ FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bvs\|3bvs]], [[3jx7\|3jx7]], [[3jxy\|3jxy]], [[3jy1\|3jy1]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AlkD, BC_4913 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jxz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jxz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3jxz RCSB], [http://www.ebi.ac.uk/pdbsum/3jxz PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/3jxz_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	DNA glycosylases that remove alkylated and deaminated purine nucleobases are essential DNA repair enzymes that protect the genome, and at the same time confound cancer alkylation therapy, by excising cytotoxic N3-methyladenine bases formed by DNA-targeting anticancer compounds. The basis for glycosylase specificity towards N3- and N7-alkylpurines is believed to result from intrinsic instability of the modified bases and not from direct enzyme functional group chemistry. Here we present crystal structures of the recently discovered Bacillus cereus AlkD glycosylase in complex with DNAs containing alkylated, mismatched and abasic nucleotides. Unlike other glycosylases, AlkD captures the extrahelical lesion in a solvent-exposed orientation, providing an illustration for how hydrolysis of N3- and N7-alkylated bases may be facilitated by increased lifetime out of the DNA helix. The structures and supporting biochemical analysis of base flipping and catalysis reveal how the HEAT repeats of AlkD distort the DNA backbone to detect non-Watson-Crick base pairs without duplex intercalation.

-	~~{{STRUCTURE_3jxz\| PDB=3jxz \| SCENE= }}~~	+	An unprecedented nucleic acid capture mechanism for excision of DNA damage.,Rubinson EH, Gowda AS, Spratt TE, Gold B, Eichman BF Nature. 2010 Nov 18;468(7322):406-11. Epub 2010 Oct 3. PMID:20927102<ref>PMID:20927102</ref>

-	~~===Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20927102}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3jxz]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacillus_cereus Bacillus cereus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].~~	+

	==See Also==		==See Also==
-	*[[DNA ~~glycosylate~~\|DNA ~~glycosylate~~]]	+	*[[DNA glycosylase\|DNA glycosylase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020927102<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus cereus]]		[[Category: Bacillus cereus]]
-	[[Category: Eichman, B F.]]	+	[[Category: Eichman, B F]]
-	[[Category: Rubinson, E H.]]	+	[[Category: Rubinson, E H]]
	[[Category: Dna alkylation]]		[[Category: Dna alkylation]]
	[[Category: Dna binding]]		[[Category: Dna binding]]

OCA at 21:41, 20 October 2012

OCA — Sat, 20 Oct 2012 21:41:44 GMT

←Older revision		Revision as of 21:41, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3jxz]] is a 3 chain structure ~~of [[DNA glycosylate]]~~ with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].	+	[[3jxz]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].

	==See Also==		==See Also==

OCA: Protected "3jxz" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 14:00:25 GMT

Protected "3jxz" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:00, 27 July 2012

OCA at 14:00, 27 July 2012

OCA — Fri, 27 Jul 2012 14:00:21 GMT

←Older revision		Revision as of 14:00, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:3jxz.png\|left\|200px]]		[[Image:3jxz.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3jxz", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3jxz\| PDB=3jxz \| SCENE= }}		{{STRUCTURE_3jxz\| PDB=3jxz \| SCENE= }}

	===Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)===		===Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20927102}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20927102 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20927102}}		{{ABSTRACT_PUBMED_20927102}}

	==About this Structure==		==About this Structure==
-	~~3JXZ~~ is a 3 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/~~Bacillus_cereus_atcc_10987~~ Bacillus cereus ~~atcc 10987~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].	+	[[3jxz]] is a 3 chain structure of [[DNA glycosylate]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].
		+
		+	==See Also==
		+	*[[DNA glycosylate\|DNA glycosylate]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20927102~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020927102</ref><references group="xtra"/>
-	[[Category: Bacillus cereus ~~atcc 10987~~]]	+	[[Category: Bacillus cereus]]
	[[Category: Eichman, B F.]]		[[Category: Eichman, B F.]]
	[[Category: Rubinson, E H.]]		[[Category: Rubinson, E H.]]
Line 33:		Line 24:
	[[Category: Hydrolase-dna complex]]		[[Category: Hydrolase-dna complex]]
	[[Category: Lyase-dna complex]]		[[Category: Lyase-dna complex]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 1 10:58:28 2010''

OCA at 07:46, 1 December 2010

OCA — Wed, 01 Dec 2010 07:46:41 GMT

←Older revision		Revision as of 07:46, 1 December 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3jxz.~~jpg~~\|left\|200px]]	+	[[Image:3jxz.png\|left\|200px]]

	<!--		<!--
Line 12:		Line 12:
	===Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)===		===Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20927102}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20927102 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20927102}}

	==About this Structure==		==About this Structure==
	3JXZ is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_10987 Bacillus cereus atcc 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].		3JXZ is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_10987 Bacillus cereus atcc 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20927102</ref><references group="xtra"/>
	[[Category: Bacillus cereus atcc 10987]]		[[Category: Bacillus cereus atcc 10987]]
	[[Category: Eichman, B F.]]		[[Category: Eichman, B F.]]
Line 25:		Line 34:
	[[Category: Lyase-dna complex]]		[[Category: Lyase-dna complex]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Sep 22 14~~:44:11 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 1 10:58:28 2010''

OCA at 11:35, 22 September 2010

OCA — Wed, 22 Sep 2010 11:35:12 GMT

←Older revision		Revision as of 11:35, 22 September 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3jxz.jpg\|left\|200px]]

-	The ~~entry 3jxz~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3jxz", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3jxz\| PDB=3jxz \| SCENE= }}

-	~~Authors: Rubinson, E.H., Eichman, B.F.~~	+	===Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)===

-	Description: Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Oct~~ 14 10:06:~~39 2009~~''	+	==About this Structure==
		+	3JXZ is a 3 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_10987 Bacillus cereus atcc 10987]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JXZ OCA].
		+	[[Category: Bacillus cereus atcc 10987]]
		+	[[Category: Eichman, B F.]]
		+	[[Category: Rubinson, E H.]]
		+	[[Category: Dna alkylation]]
		+	[[Category: Dna binding]]
		+	[[Category: Dna glycosylase]]
		+	[[Category: Heat repeat]]
		+	[[Category: Hydrolase-dna complex]]
		+	[[Category: Lyase-dna complex]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 14:44:11 2010''

OCA at 08:06, 14 October 2009

OCA — Wed, 14 Oct 2009 08:06:40 GMT

←Older revision		Revision as of 08:06, 14 October 2009
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3jxz is ON HOLD	+	The entry 3jxz is ON HOLD until Paper Publication

	Authors: Rubinson, E.H., Eichman, B.F.		Authors: Rubinson, E.H., Eichman, B.F.
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	Description: Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)		Description: Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from T)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Sep 30 09~~:01:00 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 14 10:06:39 2009''