3k56 - Revision history

OCA at 08:09, 6 September 2023

OCA — Wed, 06 Sep 2023 08:09:29 GMT

←Older revision		Revision as of 08:09, 6 September 2023
Line 1:		Line 1:

	==Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S==		==Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S==
-	<StructureSection load='3k56' size='340' side='right' caption='[[3k56]], [[Resolution\|resolution]] 2.34Å' scene=''>	+	<StructureSection load='3k56' size='340' side='right'caption='[[3k56]], [[Resolution\|resolution]] 2.34Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3k56]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43067 Atcc 43067~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3K56 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3k56]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K56 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=IS3:ISOPENTENYL+DIPHOSPHATE+BETA~~-~~S'>IS3</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.34Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[3k4o\|3k4o]], [[3k4y\|3k4y]], [[3k52\|3k52]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IS3:ISOPENTENYL+DIPHOSPHATE+BETA-S'>IS3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">MJ0044 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ATCC 43067])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [https://pdbe.org/3k56 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [https://www.ebi.ac.uk/pdbsum/3k56 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k56 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [~~http~~://pdbe.org/3k56 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3k56 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3k56 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/IPK_METJA IPK_METJA]] Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids. Has no activity with farnesyl phosphate.<ref>PMID:16621811</ref> <ref>PMID:20392112</ref>	+	[https://www.uniprot.org/uniprot/IPK_METJA IPK_METJA] Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids. Has no activity with farnesyl phosphate.<ref>PMID:16621811</ref> <ref>PMID:20392112</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 43067]]~~	+	[[Category: Large Structures]]
-	~~[[Category: Dellas, N]]~~	+
-	~~[[Category: Noel, J P]]~~	+
-	~~[[Category: Archaea]]~~	+
-	~~[[Category: Atp gamma-]]~~	+
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Isopentenyl diphosphate]]~~	+
-	~~[[Category: Isopentenyl monophosphate]]~~	+
-	~~[[Category: Isoprenoid biosynthesis~~]]	+
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii]]
-	[[Category: ~~Mevalonate pathway~~]]	+	[[Category: Dellas N]]
-	[[Category: ~~Small molecule kinase]]~~	+	[[Category: Noel JP]]
-	~~[[Category: Transferase~~]]	+

OCA at 08:57, 26 December 2018

OCA — Wed, 26 Dec 2018 08:57:29 GMT

←Older revision		Revision as of 08:57, 26 December 2018
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/3k56_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/3k56_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 21:15, 4 August 2016

OCA — Thu, 04 Aug 2016 21:15:58 GMT

←Older revision		Revision as of 21:15, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S==		==Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S==
	<StructureSection load='3k56' size='340' side='right' caption='[[3k56]], [[Resolution\|resolution]] 2.34Å' scene=''>		<StructureSection load='3k56' size='340' side='right' caption='[[3k56]], [[Resolution\|resolution]] 2.34Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3k56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanocaldococcus_jannaschii Methanocaldococcus jannaschii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K56 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3k56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K56 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IS3:ISOPENTENYL+DIPHOSPHATE+BETA-S'>IS3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IS3:ISOPENTENYL+DIPHOSPHATE+BETA-S'>IS3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3k4o\|3k4o]], [[3k4y\|3k4y]], [[3k52\|3k52]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3k4o\|3k4o]], [[3k4y\|3k4y]], [[3k52\|3k52]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MJ0044 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ~~Methanocaldococcus jannaschii~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MJ0044 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ATCC 43067])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [http://www.ebi.ac.uk/pdbsum/3k56 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [http://pdbe.org/3k56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [http://www.ebi.ac.uk/pdbsum/3k56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k56 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~Y044_METJA Y044_METJA~~]] Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids. Has no activity with farnesyl phosphate.<ref>PMID:16621811</ref> <ref>PMID:20392112</ref>	+	[[http://www.uniprot.org/uniprot/IPK_METJA IPK_METJA]] Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids. Has no activity with farnesyl phosphate.<ref>PMID:16621811</ref> <ref>PMID:20392112</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k56 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 29:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3k56" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Methanocaldococcus jannaschii~~]]	+	[[Category: Atcc 43067]]
	[[Category: Dellas, N]]		[[Category: Dellas, N]]
	[[Category: Noel, J P]]		[[Category: Noel, J P]]
Line 41:		Line 43:
	[[Category: Isopentenyl monophosphate]]		[[Category: Isopentenyl monophosphate]]
	[[Category: Isoprenoid biosynthesis]]		[[Category: Isoprenoid biosynthesis]]
		+	[[Category: Methanocaldococcus jannaschii]]
	[[Category: Mevalonate pathway]]		[[Category: Mevalonate pathway]]
	[[Category: Small molecule kinase]]		[[Category: Small molecule kinase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 19:43, 24 December 2014

OCA — Wed, 24 Dec 2014 19:43:41 GMT

←Older revision		Revision as of 19:43, 24 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [http://www.ebi.ac.uk/pdbsum/3k56 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [http://www.ebi.ac.uk/pdbsum/3k56 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Y044_METJA Y044_METJA]] Catalyzes the formation of isopentenyl diphosphate (IPP), the building block of all isoprenoids. Has no activity with farnesyl phosphate.<ref>PMID:16621811</ref> <ref>PMID:20392112</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 14:48, 18 December 2014

OCA — Thu, 18 Dec 2014 14:48:00 GMT

←Older revision		Revision as of 14:48, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3k56\| PDB=3k56 \| SCENE= }}~~	+	==Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S==
-	===Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S===	+	<StructureSection load='3k56' size='340' side='right' caption='[[3k56]], [[Resolution\|resolution]] 2.34Å' scene=''>
-	~~{{ABSTRACT_PUBMED_20392112}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3k56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K56 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IS3:ISOPENTENYL+DIPHOSPHATE+BETA-S'>IS3</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3k4o\|3k4o]], [[3k4y\|3k4y]], [[3k52\|3k52]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MJ0044 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 Methanocaldococcus jannaschii])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3k56 RCSB], [http://www.ebi.ac.uk/pdbsum/3k56 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/3k56_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The biosynthesis of isopentenyl diphosphate (IPP) from either the mevalonate (MVA) or the 1-deoxy-d-xylulose-5-phosphate (DXP) pathway provides the key metabolite for primary and secondary isoprenoid biosynthesis. Isoprenoid metabolism plays crucial roles in membrane stability, steroid biosynthesis, vitamin production, protein localization, defense and communication, photoprotection, sugar transport and glycoprotein biosynthesis. Recently, an alternative branch of the MVA pathway was discovered in the archaeon Methanocaldococcus jannaschii involving a small molecule kinase, isopentenyl phosphate kinase (IPK). IPK belongs to the amino acid kinase (AAK) superfamily. In vitro, IPK phosphorylates isopentenyl monophosphate (IP) in an ATP and Mg2+-dependent reaction producing IPP. Here, we describe crystal structures of IPK from M. jannaschii refined to nominal resolutions of 2.0-2.8 A. Notably, an active site histidine residue (His60) forms a hydrogen bond with the terminal phosphate of both substrate and product. This His residue serves as a marker for a subset of the AAK family that catalyze phosphorylation of phosphate or phosphonate functional groups; the larger family includes carboxyl-directed kinases, which lack this active site residue. Using steady-state kinetic analysis of H60A, H60N and H60Q mutants, the protonated form of the Nepsilon2 nitrogen of His60 was shown to be essential for catalysis, most likely through hydrogen bond stabilization of the transition state accompanying transphosphorylation. Moreover, the structures served as the starting point for the engineering of IPK mutants capable of the chemoenzymatic synthesis of longer chain isoprenoid diphosphates from monophosphate precursors.

-	~~==About this Structure==~~	+	Mutation of Archaeal Isopentenyl Phosphate Kinase Highlights Mechanism and Guides Phosphorylation of Additional Isoprenoid Monophosphates.,Dellas N, Noel JP ACS Chem Biol. 2010 Apr 14. PMID:20392112<ref>PMID:20392112</ref>
-	~~[[3k56]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]~~. ~~Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:020392112</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii]]
-	[[Category: Dellas, N.]]	+	[[Category: Dellas, N]]
-	[[Category: Noel, J P.]]	+	[[Category: Noel, J P]]
	[[Category: Archaea]]		[[Category: Archaea]]
	[[Category: Atp gamma-]]		[[Category: Atp gamma-]]
Line 17:		Line 39:
	[[Category: Isopentenyl monophosphate]]		[[Category: Isopentenyl monophosphate]]
	[[Category: Isoprenoid biosynthesis]]		[[Category: Isoprenoid biosynthesis]]
-	[[Category: Methanocaldococcus jannaschii]]
	[[Category: Mevalonate pathway]]		[[Category: Mevalonate pathway]]
	[[Category: Small molecule kinase]]		[[Category: Small molecule kinase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA: Protected "3k56" [edit=sysop:move=sysop]

OCA — Thu, 04 Apr 2013 02:10:04 GMT

Protected "3k56" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:10, 4 April 2013

OCA at 02:10, 4 April 2013

OCA — Thu, 04 Apr 2013 02:10:03 GMT

←Older revision		Revision as of 02:10, 4 April 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3k56.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3k56", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3k56\| PDB=3k56 \| SCENE= }}		{{STRUCTURE_3k56\| PDB=3k56 \| SCENE= }}
-
	===Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S===		===Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20392112}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20392112 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20392112}}		{{ABSTRACT_PUBMED_20392112}}

	==About this Structure==		==About this Structure==
-	~~3K56~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA].	+	[[3k56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20392112~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020392112</ref><references group="xtra"/><references/>
	[[Category: Methanocaldococcus jannaschii]]		[[Category: Methanocaldococcus jannaschii]]
	[[Category: Dellas, N.]]		[[Category: Dellas, N.]]
Line 37:		Line 21:
	[[Category: Small molecule kinase]]		[[Category: Small molecule kinase]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 7 08:05:47 2010''

OCA at 04:00, 7 July 2010

OCA — Wed, 07 Jul 2010 04:00:17 GMT

←Older revision		Revision as of 04:00, 7 July 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3k56.~~jpg~~\|left\|200px]]	+	[[Image:3k56.png\|left\|200px]]

	<!--		<!--
Line 38:		Line 38:
	[[Category: Transferase]]		[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~May~~ ~~5 11~~:54:34 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 7 08:05:47 2010''

OCA at 08:54, 5 May 2010

OCA — Wed, 05 May 2010 08:54:36 GMT

←Older revision		Revision as of 08:54, 5 May 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3k56.jpg\|left\|200px]]

-	The ~~entry 3k56~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3k56", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3k56\| PDB=3k56 \| SCENE= }}

-	~~Authors: Dellas, N., Noel, J.P~~.	+	===Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S===

-	Description: Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Nov 25 09:~~11:~~58 2009~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20392112}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20392112 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20392112}}
		+
		+	==About this Structure==
		+	3K56 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K56 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20392112</ref><references group="xtra"/>
		+	[[Category: Methanocaldococcus jannaschii]]
		+	[[Category: Dellas, N.]]
		+	[[Category: Noel, J P.]]
		+	[[Category: Archaea]]
		+	[[Category: Atp gamma-]]
		+	[[Category: Atp-binding]]
		+	[[Category: Isopentenyl diphosphate]]
		+	[[Category: Isopentenyl monophosphate]]
		+	[[Category: Isoprenoid biosynthesis]]
		+	[[Category: Methanocaldococcus jannaschii]]
		+	[[Category: Mevalonate pathway]]
		+	[[Category: Small molecule kinase]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 5 11:54:34 2010''

OCA at 07:11, 25 November 2009

OCA — Wed, 25 Nov 2009 07:11:58 GMT

←Older revision		Revision as of 07:11, 25 November 2009
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3k56 is ON HOLD	+	The entry 3k56 is ON HOLD until Paper Publication

	Authors: Dellas, N., Noel, J.P.		Authors: Dellas, N., Noel, J.P.
Line 7:		Line 7:
	Description: Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S		Description: Crystal Structure of Isopentenyl Phosphate Kinase from M. jannaschii in complex with IPP beta-S

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Oct 28 12~~:57:26 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 25 09:11:58 2009''