3keb - Revision history

OCA at 08:14, 6 September 2023

OCA — Wed, 06 Sep 2023 08:14:13 GMT

←Older revision		Revision as of 08:14, 6 September 2023
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	==Thiol peroxidase from Chromobacterium violaceum==		==Thiol peroxidase from Chromobacterium violaceum==
-	<StructureSection load='3keb' size='340' side='right' caption='[[3keb]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3keb' size='340' side='right'caption='[[3keb]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3keb]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"chromobacterium_janthinum"_(zopf)_ford_1927 "chromobacterium janthinum" (zopf) ford 1927~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3KEB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3keb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KEB FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CL:CHLORIDE+ION'>CL</scene~~>, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">CV_3708 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 "Chromobacterium janthinum" (Zopf) Ford 1927])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3keb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3keb OCA], [https://pdbe.org/3keb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3keb RCSB], [https://www.ebi.ac.uk/pdbsum/3keb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3keb ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3keb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3keb OCA], [~~http~~://pdbe.org/3keb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3keb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3keb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3keb ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7NRS2_CHRVO Q7NRS2_CHRVO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ke/3keb_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ke/3keb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Edwards, A M~~]]	+	[[Category: Chromobacterium violaceum]]
-	[[Category: ~~Joachimiak, A~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Kagan, O~~]]	+	[[Category: Edwards AM]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Joachimiak A]]
-	~~[[Category: Osipiuk, J]]~~	+	[[Category: Kagan O]]
-	~~[[Category: Savchenko,~~ A]]	+	[[Category: Osipiuk J]]
-	[[Category: ~~Apc40679~~]]	+	[[Category: Savchenko A]]
-	[[Category: ~~Mcsg~~]]	+
-	[[Category: ~~Oxidoreductase]]~~	+
-	~~[[Category: Peroxidase]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Thiol peroxidase~~]]	+

OCA at 09:43, 5 August 2016

OCA — Fri, 05 Aug 2016 09:43:31 GMT

←Older revision		Revision as of 09:43, 5 August 2016
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		+
	==Thiol peroxidase from Chromobacterium violaceum==		==Thiol peroxidase from Chromobacterium violaceum==
	<StructureSection load='3keb' size='340' side='right' caption='[[3keb]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3keb' size='340' side='right' caption='[[3keb]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3keb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chromobacterium_violaceum Chromobacterium violaceum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KEB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3keb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"chromobacterium_janthinum"_(zopf)_ford_1927 "chromobacterium janthinum" (zopf) ford 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KEB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_3708 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium ~~violaceum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_3708 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 "Chromobacterium janthinum" (Zopf) Ford 1927])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3keb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3keb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3keb RCSB], [http://www.ebi.ac.uk/pdbsum/3keb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3keb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3keb OCA], [http://pdbe.org/3keb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3keb RCSB], [http://www.ebi.ac.uk/pdbsum/3keb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3keb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3keb ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Chromobacterium violaceum]]
	[[Category: Edwards, A M]]		[[Category: Edwards, A M]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 16:05, 18 December 2014

OCA — Thu, 18 Dec 2014 16:05:01 GMT

←Older revision		Revision as of 16:05, 18 December 2014
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-	~~{{STRUCTURE_3keb\| PDB=3keb \| SCENE= }}~~	+	==Thiol peroxidase from Chromobacterium violaceum==
-	===Thiol peroxidase from Chromobacterium violaceum===	+	<StructureSection load='3keb' size='340' side='right' caption='[[3keb]], [[Resolution\|resolution]] 1.80Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3keb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KEB FirstGlance]. <br>
-	[[3keb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CV_3708 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3keb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3keb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3keb RCSB], [http://www.ebi.ac.uk/pdbsum/3keb PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ke/3keb_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Chromobacterium violaceum]]		[[Category: Chromobacterium violaceum]]
-	[[Category: Edwards, A M.]]	+	[[Category: Edwards, A M]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kagan, O.]]	+	[[Category: Kagan, O]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Osipiuk, J.]]	+	[[Category: Osipiuk, J]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
	[[Category: Apc40679]]		[[Category: Apc40679]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Peroxidase]]		[[Category: Peroxidase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+	[[Category: Thiol peroxidase]]
-	~~[[Category: Structural genomic~~]]	+
-	[[Category: Thiol peroxidase.]]	+

OCA: Protected "3keb" [edit=sysop:move=sysop]

OCA — Thu, 04 Apr 2013 02:40:53 GMT

Protected "3keb" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:40, 4 April 2013

OCA at 02:40, 4 April 2013

OCA — Thu, 04 Apr 2013 02:40:41 GMT

←Older revision		Revision as of 02:40, 4 April 2013
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-	{{Seed}}
-	[[Image:3keb.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3keb", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3keb\| PDB=3keb \| SCENE= }}		{{STRUCTURE_3keb\| PDB=3keb \| SCENE= }}
-
	===Thiol peroxidase from Chromobacterium violaceum===		===Thiol peroxidase from Chromobacterium violaceum===
-

	==About this Structure==		==About this Structure==
-	~~3KEB~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA].	+	[[3keb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KEB OCA].
	[[Category: Chromobacterium violaceum]]		[[Category: Chromobacterium violaceum]]
	[[Category: Edwards, A M.]]		[[Category: Edwards, A M.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Thiol peroxidase.]]		[[Category: Thiol peroxidase.]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 4 11:06:21 2009''

OCA: New page: {{Seed}} 200px