3koj - Revision history

OCA at 12:27, 13 October 2021

OCA — Wed, 13 Oct 2021 12:27:52 GMT

←Older revision		Revision as of 12:27, 13 October 2021
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	==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==		==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==
-	<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='3koj' size='340' side='right'caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [~~http~~://pdbe.org/3koj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3koj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3koj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [https://pdbe.org/3koj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [https://www.ebi.ac.uk/pdbsum/3koj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3koj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Anacystis nidulans]]		[[Category: Anacystis nidulans]]
		+	[[Category: Large Structures]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 09:34, 25 October 2017

OCA — Wed, 25 Oct 2017 09:34:21 GMT

←Older revision		Revision as of 09:34, 25 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==		==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==
	<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [http://pdbe.org/3koj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [http://www.ebi.ac.uk/pdbsum/3koj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [http://pdbe.org/3koj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [http://www.ebi.ac.uk/pdbsum/3koj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3koj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 23:09, 9 February 2016

OCA — Tue, 09 Feb 2016 23:09:10 GMT

←Older revision		Revision as of 23:09, 9 February 2016
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	<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anacystis_nidulans Anacystis nidulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 ~~Synechococcus elongatus PCC 6301~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Anacystis nidulans])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [http://www.ebi.ac.uk/pdbsum/3koj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [http://pdbe.org/3koj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [http://www.ebi.ac.uk/pdbsum/3koj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3koj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Synechococcus elongatus pcc 6301~~]]	+	[[Category: Anacystis nidulans]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 16:34, 18 December 2014

OCA — Thu, 18 Dec 2014 16:34:42 GMT

←Older revision		Revision as of 16:34, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3koj\| PDB=3koj \| SCENE= }}~~	+	==Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.==
-	===Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.===	+	<StructureSection load='3koj' size='340' side='right' caption='[[3koj]], [[Resolution\|resolution]] 1.90Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3koj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KOJ FirstGlance]. <br>
-	[[3koj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA].	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">syc1425_d, ycf41 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269084 Synechococcus elongatus PCC 6301])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3koj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3koj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3koj RCSB], [http://www.ebi.ac.uk/pdbsum/3koj PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/3koj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Synechococcus elongatus pcc 6301]]		[[Category: Synechococcus elongatus pcc 6301]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Ciccosanti, C.]]	+	[[Category: Ciccosanti, C]]
-	[[Category: Foote, L E.]]	+	[[Category: Foote, L E]]
-	[[Category: Hunt, J F.]]	+	[[Category: Hunt, J F]]
-	[[Category: Janjua, H.]]	+	[[Category: Janjua, H]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Seetharaman, J.]]	+	[[Category: Seetharaman, J]]
-	[[Category: Su, M.]]	+	[[Category: Su, M]]
-	[[Category: Tong, L.]]	+	[[Category: Tong, L]]
-	[[Category: Vorobiev, S.]]	+	[[Category: Vorobiev, S]]
-	[[Category: Wang, H.]]	+	[[Category: Wang, H]]
-	[[Category: Xiao, R.]]	+	[[Category: Xiao, R]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: Northeast structural genomics consortium]]
	[[Category: Pf00436]]		[[Category: Pf00436]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2~~]]	+
	[[Category: Single-strand binding protein family]]		[[Category: Single-strand binding protein family]]
	[[Category: Snr59a]]		[[Category: Snr59a]]
-	[[Category: Structural genomic]]

OCA: Protected "3koj" [edit=sysop:move=sysop]

OCA — Thu, 04 Apr 2013 02:03:28 GMT

Protected "3koj" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:03, 4 April 2013

OCA at 02:03, 4 April 2013

OCA — Thu, 04 Apr 2013 02:03:25 GMT

←Older revision		Revision as of 02:03, 4 April 2013
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-	{{Seed}}
-	[[Image:3koj.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3koj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3koj\| PDB=3koj \| SCENE= }}		{{STRUCTURE_3koj\| PDB=3koj \| SCENE= }}
-
	===Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.===		===Crystal structure of the SSB domain of Q5N255_SYNP6 protein from Synechococcus sp. Northeast Structural Genomics Consortium Target SnR59a.===
-

	==About this Structure==		==About this Structure==
-	~~3KOJ~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA].	+	[[3koj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA].
	[[Category: Synechococcus elongatus pcc 6301]]		[[Category: Synechococcus elongatus pcc 6301]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]
Line 29:		Line 18:
	[[Category: Wang, H.]]		[[Category: Wang, H.]]
	[[Category: Xiao, R.]]		[[Category: Xiao, R.]]
		+	[[Category: Dna binding protein]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
	[[Category: Nesg]]		[[Category: Nesg]]
Line 38:		Line 28:
	[[Category: Snr59a]]		[[Category: Snr59a]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 14:24:31 2010''

OCA at 12:24, 28 January 2010

OCA — Thu, 28 Jan 2010 12:24:32 GMT

←Older revision		Revision as of 12:24, 28 January 2010
Line 1:		Line 1:
	{{Seed}}		{{Seed}}
-	[[Image:3koj.~~jpg~~\|left\|200px]]	+	[[Image:3koj.png\|left\|200px]]

	<!--		<!--
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	3KOJ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA].	+	3KOJ is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KOJ OCA].
	[[Category: Synechococcus elongatus pcc 6301]]		[[Category: Synechococcus elongatus pcc 6301]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]
Line 39:		Line 39:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Nov 25 10~~:22:~~54 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 14:24:31 2010''

OCA: New page: {{Seed}} 200px