3kzm - Revision history

OCA at 08:27, 6 September 2023

OCA — Wed, 06 Sep 2023 08:27:50 GMT

←Older revision		Revision as of 08:27, 6 September 2023
Line 1:		Line 1:

	==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate==		==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate==
-	<StructureSection load='3kzm' size='340' side='right' caption='[[3kzm]], [[Resolution\|resolution]] 1.95Å' scene=''>	+	<StructureSection load='3kzm' size='340' side='right'caption='[[3kzm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3kzm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Xancp Xancp~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3KZM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3kzm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris_str._ATCC_33913 Xanthomonas campestris pv. campestris str. ATCC 33913]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KZM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CP:PHOSPHORIC+ACID+MONO(FORMAMIDE)ESTER'>CP</scene~~>, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~KCX~~:~~LYSINE~~+~~NZ-CARBOXYLIC~~+~~ACID~~'>~~KCX~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CP:PHOSPHORIC+ACID+MONO(FORMAMIDE)ESTER'>CP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat">[[2fg7\|2fg7]]~~, ~~[[3kzc\|3kzc]], [[3kzk\|3kzk]], [[3kzn\|3kzn]], [[3kzo\|3kzo]], [[3l02\|3l02]], [[3l04\|3l04]], [[3l05\|3l05]], [[3l06\|3l06]]~~<~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [https://pdbe.org/3kzm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [https://www.ebi.ac.uk/pdbsum/3kzm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kzm ProSAT]</span></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">argF~~, ~~argF', XCC2249 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=190485 XANCP])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[http://en.wikipedia.org/wiki/N-acetylornithine_carbamoyltransferase N-acetylornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.9 2.1.3.9]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [~~http~~://pdbe.org/3kzm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3kzm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3kzm ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/AOTC_XANCP AOTC_XANCP]] Catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine.	+	[https://www.uniprot.org/uniprot/AOTC_XANCP AOTC_XANCP] Catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~N-acetylornithine carbamoyltransferase~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Xancp~~]]	+	[[Category: Xanthomonas campestris pv. campestris str. ATCC 33913]]
-	[[Category: Allewell~~, N M~~]]	+	[[Category: Allewell NM]]
-	[[Category: Shi, D]]	+	[[Category: Shi D]]
-	[[Category: Tuchman, M]]	+	[[Category: Tuchman M]]
-	[[Category: Yu, X]]	+	[[Category: Yu X]]
-	~~[[Category: Amino-acid biosynthesis]]~~	+
-	~~[[Category: Arginine biosynthesis]]~~	+
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Transcarbamylase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:17, 2 January 2019

OCA — Wed, 02 Jan 2019 07:17:47 GMT

←Older revision		Revision as of 07:17, 2 January 2019
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/3kzm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/3kzm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</div>		</div>
	<div class="pdbe-citations 3kzm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3kzm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[N-acetylornithine carbamoyltransferase\|N-acetylornithine carbamoyltransferase]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Amino-acid biosynthesis]]		[[Category: Amino-acid biosynthesis]]
	[[Category: Arginine biosynthesis]]		[[Category: Arginine biosynthesis]]
		+	[[Category: Cytoplasm]]
	[[Category: Transcarbamylase]]		[[Category: Transcarbamylase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 03:43, 5 August 2016

OCA — Fri, 05 Aug 2016 03:43:53 GMT

←Older revision		Revision as of 03:43, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate==		==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate==
	<StructureSection load='3kzm' size='340' side='right' caption='[[3kzm]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='3kzm' size='340' side='right' caption='[[3kzm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3kzm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KZM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3kzm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xancp Xancp]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KZM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CP:PHOSPHORIC+ACID+MONO(FORMAMIDE)ESTER'>CP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CP:PHOSPHORIC+ACID+MONO(FORMAMIDE)ESTER'>CP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fg7\|2fg7]], [[3kzc\|3kzc]], [[3kzk\|3kzk]], [[3kzn\|3kzn]], [[3kzo\|3kzo]], [[3l02\|3l02]], [[3l04\|3l04]], [[3l05\|3l05]], [[3l06\|3l06]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fg7\|2fg7]], [[3kzc\|3kzc]], [[3kzk\|3kzk]], [[3kzn\|3kzn]], [[3kzo\|3kzo]], [[3l02\|3l02]], [[3l04\|3l04]], [[3l05\|3l05]], [[3l06\|3l06]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argF, argF', XCC2249 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~340 Xanthomonas campestris pv. campestris~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argF, argF', XCC2249 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=190485 XANCP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylornithine_carbamoyltransferase N-acetylornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.9 2.1.3.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylornithine_carbamoyltransferase N-acetylornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.9 2.1.3.9] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [http://www.ebi.ac.uk/pdbsum/3kzm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [http://pdbe.org/3kzm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [http://www.ebi.ac.uk/pdbsum/3kzm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kzm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 21:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kzm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3kzm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: N-acetylornithine carbamoyltransferase]]		[[Category: N-acetylornithine carbamoyltransferase]]
-	[[Category: ~~Xanthomonas campestris pv. campestris~~]]	+	[[Category: Xancp]]
	[[Category: Allewell, N M]]		[[Category: Allewell, N M]]
	[[Category: Shi, D]]		[[Category: Shi, D]]

OCA at 15:34, 25 December 2014

OCA — Thu, 25 Dec 2014 15:34:28 GMT

←Older revision		Revision as of 15:34, 25 December 2014
Line 10:		Line 10:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [http://www.ebi.ac.uk/pdbsum/3kzm PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [http://www.ebi.ac.uk/pdbsum/3kzm PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AOTC_XANCP AOTC_XANCP]] Catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway. The enzyme has no activity with ornithine.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 15:38, 18 December 2014

OCA — Thu, 18 Dec 2014 15:38:40 GMT

←Older revision		Revision as of 15:38, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3kzm\| PDB=3kzm \| SCENE= }}~~	+	==Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate==
-	===Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate===	+	<StructureSection load='3kzm' size='340' side='right' caption='[[3kzm]], [[Resolution\|resolution]] 1.95Å' scene=''>
-	~~{{ABSTRACT_PUBMED_16741992}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3kzm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KZM FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CP:PHOSPHORIC+ACID+MONO(FORMAMIDE)ESTER'>CP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fg7\|2fg7]], [[3kzc\|3kzc]], [[3kzk\|3kzk]], [[3kzn\|3kzn]], [[3kzo\|3kzo]], [[3l02\|3l02]], [[3l04\|3l04]], [[3l05\|3l05]], [[3l06\|3l06]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argF, argF', XCC2249 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=340 Xanthomonas campestris pv. campestris])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/N-acetylornithine_carbamoyltransferase N-acetylornithine carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.9 2.1.3.9] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kzm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kzm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kzm RCSB], [http://www.ebi.ac.uk/pdbsum/3kzm PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kz/3kzm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	N-acetyl-L-ornithine transcarbamoylase (AOTCase) is a new member of the transcarbamoylase superfamily that is essential for arginine biosynthesis in several eubacteria. We report here crystal structures of the binary complexes of AOTCase with its substrates, carbamoyl phosphate (CP) or N-acetyl-L-ornithine (AORN), and the ternary complex with CP and N-acetyl-L-norvaline. Comparison of these structures demonstrates that the substrate-binding mechanism of this novel transcarbamoylase is different from those of aspartate and ornithine transcarbamoylases, both of which show ordered substrate binding with large domain movements. CP and AORN bind to AOTCase independently, and the main conformational change upon substrate binding is ordering of the 80's loop, with a small domain closure around the active site and little movement of the 240's loop. The structures of the complexes provide insight into the mode of substrate binding and the mechanism of the transcarbamoylation reaction.

-	~~==About this Structure==~~	+	Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis.,Shi D, Yu X, Roth L, Morizono H, Tuchman M, Allewell NM Proteins. 2006 Aug 1;64(2):532-42. PMID:16741992<ref>PMID:16741992</ref>
-	~~[[3kzm]] is a 1 chain structure with sequence~~ from ~~[http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris~~ Xanthomonas campestris pv. ~~campestris]~~. ~~This structure supersedes the now removed PDB entry [http~~:~~//oca.weizmann.ac.il/oca~~-~~bin/send-pdb?obs=1&id=1zq2 1zq2]~~. ~~Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:016741992</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: N-acetylornithine carbamoyltransferase]]		[[Category: N-acetylornithine carbamoyltransferase]]
	[[Category: Xanthomonas campestris pv. campestris]]		[[Category: Xanthomonas campestris pv. campestris]]
-	[[Category: Allewell, N M.]]	+	[[Category: Allewell, N M]]
-	[[Category: Shi, D.]]	+	[[Category: Shi, D]]
-	[[Category: Tuchman, M.]]	+	[[Category: Tuchman, M]]
-	[[Category: Yu, X.]]	+	[[Category: Yu, X]]
	[[Category: Amino-acid biosynthesis]]		[[Category: Amino-acid biosynthesis]]
	[[Category: Arginine biosynthesis]]		[[Category: Arginine biosynthesis]]
	[[Category: Transcarbamylase]]		[[Category: Transcarbamylase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA: Protected "3kzm" [edit=sysop:move=sysop]

OCA — Thu, 04 Apr 2013 20:39:23 GMT

Protected "3kzm" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:39, 4 April 2013

OCA at 20:39, 4 April 2013

OCA — Thu, 04 Apr 2013 20:39:16 GMT

←Older revision		Revision as of 20:39, 4 April 2013
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-	{{Seed}}
-	[[Image:3kzm.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3kzm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3kzm\| PDB=3kzm \| SCENE= }}		{{STRUCTURE_3kzm\| PDB=3kzm \| SCENE= }}
-
	===Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate===		===Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16741992}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16741992 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16741992}}		{{ABSTRACT_PUBMED_16741992}}

	==About this Structure==		==About this Structure==
-	~~3KZM~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA].	+	[[3kzm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16741992~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016741992</ref><references group="xtra"/><references/>
	[[Category: N-acetylornithine carbamoyltransferase]]		[[Category: N-acetylornithine carbamoyltransferase]]
	[[Category: Xanthomonas campestris pv. campestris]]		[[Category: Xanthomonas campestris pv. campestris]]
Line 32:		Line 16:
	[[Category: Amino-acid biosynthesis]]		[[Category: Amino-acid biosynthesis]]
	[[Category: Arginine biosynthesis]]		[[Category: Arginine biosynthesis]]
-	[[Category: Cytoplasm]]
	[[Category: Transcarbamylase]]		[[Category: Transcarbamylase]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:32:43 2010''

OCA at 10:32, 31 March 2010

OCA — Wed, 31 Mar 2010 10:32:44 GMT

←Older revision		Revision as of 10:32, 31 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3kzm.jpg\|left\|200px]]

-	The ~~entry 3kzm~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3kzm", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3kzm\| PDB=3kzm \| SCENE= }}

-	~~Authors: Shi, D., Yu, X., Allewell,~~ N~~.M., Tuchman, M.~~	+	===Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate===

-	Description: Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Feb 3 09~~:17:36 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_16741992}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 16741992 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_16741992}}
		+
		+	==About this Structure==
		+	3KZM is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1zq2 1zq2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KZM OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:16741992</ref><references group="xtra"/>
		+	[[Category: N-acetylornithine carbamoyltransferase]]
		+	[[Category: Xanthomonas campestris pv. campestris]]
		+	[[Category: Allewell, N M.]]
		+	[[Category: Shi, D.]]
		+	[[Category: Tuchman, M.]]
		+	[[Category: Yu, X.]]
		+	[[Category: Amino-acid biosynthesis]]
		+	[[Category: Arginine biosynthesis]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Transcarbamylase]]
		+	[[Category: Transferase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:32:43 2010''

OCA at 07:17, 3 February 2010

OCA — Wed, 03 Feb 2010 07:17:36 GMT

←Older revision		Revision as of 07:17, 3 February 2010
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3kzm is ON HOLD	+	The entry 3kzm is ON HOLD until Paper Publication

	Authors: Shi, D., Yu, X., Allewell, N.M., Tuchman, M.		Authors: Shi, D., Yu, X., Allewell, N.M., Tuchman, M.
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	Description: Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate		Description: Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Dec 16 12~~:39:~~56 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 3 09:17:36 2010''

OCA: New page: '''Unreleased structure''' The entry 3kzm is ON HOLD Authors: Shi, D., Yu, X., Allewell, N.M., Tuchman, M. Description: Crystal structure of N-acetyl-L-ornithine transcarbamylase compl...

OCA — Wed, 16 Dec 2009 10:39:57 GMT

New page: '''Unreleased structure''' The entry 3kzm is ON HOLD Authors: Shi, D., Yu, X., Allewell, N.M., Tuchman, M. Description: Crystal structure of N-acetyl-L-ornithine transcarbamylase compl...

New page

'''Unreleased structure'''

The entry 3kzm is ON HOLD

Authors: Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

Description: Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 16 12:39:56 2009''