3l1t - Revision history

OCA at 16:19, 1 November 2023

OCA — Wed, 01 Nov 2023 16:19:00 GMT

←Older revision		Revision as of 16:19, 1 November 2023
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	<StructureSection load='3l1t' size='340' side='right'caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3l1t' size='340' side='right'caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Escherichia_coli~~ Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L1T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L1T FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2rdz\|2rdz]], [[3bnf\|3bnf]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [https://pdbe.org/3l1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [https://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [https://pdbe.org/3l1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [https://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NRFA_ECOLI NRFA_ECOLI]] Plays a role in nitrite reduction.[HAMAP-Rule:MF_01182]	+	[https://www.uniprot.org/uniprot/NRFA_ECOLI NRFA_ECOLI] Plays a role in nitrite reduction.[HAMAP-Rule:MF_01182]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 27:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Escherichia coli]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Butt~~, J N~~]]	+	[[Category: Butt JN]]
-	[[Category: Clarke~~, T A~~]]	+	[[Category: Clarke TA]]
-	[[Category: Hemmings~~, A M]]~~	+	[[Category: Hemmings AM]]
-	~~[[Category: C-type cytochrome]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Multiheme]]~~	+
-	~~[[Category: Nitrite reductase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Sulfite]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 05:40, 13 July 2022

OCA — Wed, 13 Jul 2022 05:40:53 GMT

←Older revision		Revision as of 05:40, 13 July 2022
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	<StructureSection load='3l1t' size='340' side='right'caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3l1t' size='340' side='right'caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3L1T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L1T FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rdz\|2rdz]], [[3bnf\|3bnf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2rdz\|2rdz]], [[3bnf\|3bnf]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [~~http~~://pdbe.org/3l1t PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [https://pdbe.org/3l1t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [https://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NRFA_ECOLI NRFA_ECOLI]] Plays a role in nitrite reduction.[HAMAP-Rule:MF_01182]	+	[[https://www.uniprot.org/uniprot/NRFA_ECOLI NRFA_ECOLI]] Plays a role in nitrite reduction.[HAMAP-Rule:MF_01182]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	==See Also==		==See Also==
	*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]		*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]
-	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:04, 7 October 2020

OCA — Wed, 07 Oct 2020 07:04:52 GMT

←Older revision		Revision as of 07:04, 7 October 2020
Line 1:		Line 1:

	==E. coli NrfA sulfite ocmplex==		==E. coli NrfA sulfite ocmplex==
-	<StructureSection load='3l1t' size='340' side='right' caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='3l1t' size='340' side='right'caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3L1T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3L1T FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rdz\|2rdz]], [[3bnf\|3bnf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rdz\|2rdz]], [[3bnf\|3bnf]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://pdbe.org/3l1t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://pdbe.org/3l1t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:

	==See Also==		==See Also==
-	*[[Nitrite reductase\|Nitrite reductase]]	+	*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]
		+	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 28:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
		+	[[Category: Large Structures]]
	[[Category: Butt, J N]]		[[Category: Butt, J N]]
	[[Category: Clarke, T A]]		[[Category: Clarke, T A]]

OCA at 06:42, 2 January 2019

OCA — Wed, 02 Jan 2019 06:42:43 GMT

←Older revision		Revision as of 06:42, 2 January 2019
Line 22:		Line 22:

	==See Also==		==See Also==
-	*[[~~Nitric~~ reductase\|~~Nitric~~ reductase]]	+	*[[Nitrite reductase\|Nitrite reductase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 19:52, 5 August 2016

OCA — Fri, 05 Aug 2016 19:52:08 GMT

←Older revision		Revision as of 19:52, 5 August 2016
Line 1:		Line 1:
		+
	==E. coli NrfA sulfite ocmplex==		==E. coli NrfA sulfite ocmplex==
	<StructureSection load='3l1t' size='340' side='right' caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3l1t' size='340' side='right' caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rdz\|2rdz]], [[3bnf\|3bnf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rdz\|2rdz]], [[3bnf\|3bnf]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://pdbe.org/3l1t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l1t ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3l1t" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 21:27, 25 December 2014

OCA — Thu, 25 Dec 2014 21:27:31 GMT

←Older revision		Revision as of 21:27, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NRFA_ECOLI NRFA_ECOLI]] Plays a role in nitrite reduction.[HAMAP-Rule:MF_01182]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 08:55, 9 December 2014

OCA — Tue, 09 Dec 2014 08:55:36 GMT

←Older revision		Revision as of 08:55, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3l1t.~~png~~\|~~left~~\|~~200px~~]]	+	==E. coli NrfA sulfite ocmplex==
		+	<StructureSection load='3l1t' size='340' side='right' caption='[[3l1t]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3l1t]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L1T FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2rdz\|2rdz]], [[3bnf\|3bnf]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrite_reductase_(cytochrome;_ammonia-forming) Nitrite reductase (cytochrome; ammonia-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.2 1.7.2.2] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l1t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l1t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l1t RCSB], [http://www.ebi.ac.uk/pdbsum/3l1t PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	NrfA is a pentahaem cytochrome present in a wide-range of gamma-, delta- and epsilon-proteobacteria. Its nitrite and nitric oxide reductase activities have been studied extensively and contribute to respiratory nitrite ammonification and nitric oxide detoxification respectively. Sulfite is a third substrate for NrfA that may be encountered in the micro-oxic environments where nrfA is expressed. Consequently, we have performed quantitative kinetic and thermodynamic studies of the interactions between sulfite and Escherichia coli NrfA to provide a biochemical framework from which to consider their possible cellular consequences. A combination of voltammetric, spectroscopic and crystallographic analyses define dissociation constants for sulfite binding to NrfA in oxidized (~54 muM), semi-reduced (~145 muM) and reduced (~180 muM) states that are comparable with each other, and the Km (~70 muM) for sulfite reduction at pH 7. Under comparable conditions Km values of ~22 and ~300 muM describe nitrite and nitric oxide reduction respectively, whereas the affinities of nitrate and thiocyanate for NrfA fall more than 50-fold on enzyme reduction. These results are discussed in terms of the nature of sulfite co-ordination within the active site of NrfA and their implications for the cellular activity of NrfA.

-	~~{{STRUCTURE_3l1t\| PDB=3l1t \| SCENE= }}~~	+	Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA from Escherichia coli.,Kemp GL, Clarke TA, Marritt SJ, Lockwood C, Poock SR, Hemmings AM, Richardson DJ, Cheesman MR, Butt JN Biochem J. 2010 Oct 1;431(1):73-80. PMID:20629638<ref>PMID:20629638</ref>

-	~~===E. coli NrfA sulfite ocmplex===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20629638}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3l1t]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA].~~	+

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]
	*[[Nitric reductase\|Nitric reductase]]		*[[Nitric reductase\|Nitric reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020629638<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Butt, J N.]]	+	[[Category: Butt, J N]]
-	[[Category: Clarke, T A.]]	+	[[Category: Clarke, T A]]
-	[[Category: Hemmings, A M.]]	+	[[Category: Hemmings, A M]]
	[[Category: C-type cytochrome]]		[[Category: C-type cytochrome]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 21:51, 20 October 2012

OCA — Sat, 20 Oct 2012 21:51:47 GMT

←Older revision		Revision as of 21:51, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3l1t]] is a 4 chain structure ~~of [[Cytochrome c]] and [[Nitric reductase]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA].	+	[[3l1t]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA].

	==See Also==		==See Also==

OCA: Protected "3l1t" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 14:30:14 GMT

Protected "3l1t" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:30, 27 July 2012

OCA at 14:30, 27 July 2012

OCA — Fri, 27 Jul 2012 14:30:11 GMT

←Older revision		Revision as of 14:30, 27 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3l1t.png\|left\|200px]]
-	[[Image:3l1t.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3l1t", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3l1t\| PDB=3l1t \| SCENE= }}		{{STRUCTURE_3l1t\| PDB=3l1t \| SCENE= }}

	===E. coli NrfA sulfite ocmplex===		===E. coli NrfA sulfite ocmplex===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20629638}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20629638 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20629638}}		{{ABSTRACT_PUBMED_20629638}}

	==About this Structure==		==About this Structure==
-	~~3L1T~~ is a 4 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA].	+	[[3l1t]] is a 4 chain structure of [[Cytochrome c]] and [[Nitric reductase]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L1T OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]
		+	*[[Nitric reductase\|Nitric reductase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20629638~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020629638</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Butt, J N.]]		[[Category: Butt, J N.]]
Line 38:		Line 30:
	[[Category: Sulfite]]		[[Category: Sulfite]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 27 12:09:45 2010''