3l4o - Revision history

OCA at 08:31, 6 September 2023

OCA — Wed, 06 Sep 2023 08:31:11 GMT

←Older revision		Revision as of 08:31, 6 September 2023
Line 1:		Line 1:

	==Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide==		==Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide==
-	<StructureSection load='3l4o' size='340' side='right' caption='[[3l4o]], [[Resolution\|resolution]] 2.05Å' scene=''>	+	<StructureSection load='3l4o' size='340' side='right'caption='[[3l4o]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l4o]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pardp Pardp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3L4O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l4o]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans_PD1222 Paracoccus denitrificans PD1222]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L4O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.046Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene~~></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l4m\|3l4m]], [[3orv\|3orv]], [[3pxs\|3pxs]], [[3pxt\|3pxt]], [[3pxw\|3pxw]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [https://pdbe.org/3l4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [https://www.ebi.ac.uk/pdbsum/3l4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l4o ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mauG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP]), mauA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP]), Pden_4730 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylamine_dehydrogenase_(amicyanin) Methylamine dehydrogenase (amicyanin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.9.1 1.4.9.1] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [~~http~~://pdbe.org/3l4o PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3l4o PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3l4o ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/MAUG_PARDP MAUG_PARDP]] Involved in methylamine metabolism. Essential for the maturation of the beta subunit of MADH, presumably via a step in the biosynthesis of tryptophan tryptophylquinone (TTQ), the cofactor of MADH~~. [[http://www.uniprot.org/uniprot/DHML_PARDE DHML_PARDE]] Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin~~.	+	[https://www.uniprot.org/uniprot/MAUG_PARDP MAUG_PARDP] Involved in methylamine metabolism. Essential for the maturation of the beta subunit of MADH, presumably via a step in the biosynthesis of tryptophan tryptophylquinone (TTQ), the cofactor of MADH.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l4/3l4o_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l4/3l4o_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 3l4o" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3l4o" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]
		+	*[[Methylation utilization protein MauG\|Methylation utilization protein MauG]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pardp~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Jensen, L M.R~~]]	+	[[Category: Paracoccus denitrificans PD1222]]
-	[[Category: ~~Wilmot, C M~~]]	+	[[Category: Jensen LMR]]
-	[[Category: ~~C-heme]]~~	+	[[Category: Wilmot CM]]
-	~~[[Category: Disulfide bond]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: His-tyr heme]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Maug]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Methylamine dehydrogenase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Oxidoreductase-electron transport complex]]~~	+
-	~~[[Category: Quinone cofactor]]~~	+
-	~~[[Category: Transport]]~~	+
-	~~[[Category: Ttq~~]]	+

OCA at 08:47, 1 November 2017

OCA — Wed, 01 Nov 2017 08:47:40 GMT

←Older revision		Revision as of 08:47, 1 November 2017
Line 32:		Line 32:
	</div>		</div>
	<div class="pdbe-citations 3l4o" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3l4o" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]
-	*[[Methylation utilization protein MauG\|Methylation utilization protein MauG]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:15, 4 August 2016

OCA — Thu, 04 Aug 2016 13:15:45 GMT

←Older revision		Revision as of 13:15, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide==		==Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide==
	<StructureSection load='3l4o' size='340' side='right' caption='[[3l4o]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='3l4o' size='340' side='right' caption='[[3l4o]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l4o]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Paracoccus_denitrificans Paracoccus denitrificans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L4O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l4o]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pardp Pardp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L4O FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l4m\|3l4m]], [[3orv\|3orv]], [[3pxs\|3pxs]], [[3pxt\|3pxt]], [[3pxw\|3pxw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l4m\|3l4m]], [[3orv\|3orv]], [[3pxs\|3pxs]], [[3pxt\|3pxt]], [[3pxw\|3pxw]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mauG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~266 Paracoccus denitrificans~~]), mauA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~266 Paracoccus denitrificans~~]), Pden_4730 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~266 Paracoccus denitrificans~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mauG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP]), mauA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP]), Pden_4730 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318586 PARDP])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/~~Amine_dehydrogenase Amine~~ dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.99.3 1.4.99.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methylamine_dehydrogenase_(amicyanin) Methylamine dehydrogenase (amicyanin)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.9.1 1.4.9.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [http://www.ebi.ac.uk/pdbsum/3l4o PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [http://pdbe.org/3l4o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [http://www.ebi.ac.uk/pdbsum/3l4o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l4o ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 21:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l4o ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3l4o" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]		*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]
		+	*[[Methylation utilization protein MauG\|Methylation utilization protein MauG]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Amine dehydrogenase]]~~	+	[[Category: Pardp]]
-	~~[[Category: Paracoccus denitrificans~~]]	+
	[[Category: Jensen, L M.R]]		[[Category: Jensen, L M.R]]
	[[Category: Wilmot, C M]]		[[Category: Wilmot, C M]]

OCA at 14:56, 24 December 2014

OCA — Wed, 24 Dec 2014 14:56:18 GMT

←Older revision		Revision as of 14:56, 24 December 2014
Line 10:		Line 10:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [http://www.ebi.ac.uk/pdbsum/3l4o PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [http://www.ebi.ac.uk/pdbsum/3l4o PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MAUG_PARDP MAUG_PARDP]] Involved in methylamine metabolism. Essential for the maturation of the beta subunit of MADH, presumably via a step in the biosynthesis of tryptophan tryptophylquinone (TTQ), the cofactor of MADH. [[http://www.uniprot.org/uniprot/DHML_PARDE DHML_PARDE]] Methylamine dehydrogenase carries out the oxidation of methylamine. Electrons are passed from methylamine dehydrogenase to amicyanin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:05, 9 December 2014

OCA — Tue, 09 Dec 2014 10:05:59 GMT

←Older revision		Revision as of 10:05, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3l4o.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide==
		+	<StructureSection load='3l4o' size='340' side='right' caption='[[3l4o]], [[Resolution\|resolution]] 2.05Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3l4o]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L4O FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRQ:2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC+ACID'>TRQ</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l4m\|3l4m]], [[3orv\|3orv]], [[3pxs\|3pxs]], [[3pxt\|3pxt]], [[3pxw\|3pxw]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mauG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans]), mauA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans]), Pden_4730 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Amine_dehydrogenase Amine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.99.3 1.4.99.3] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l4o RCSB], [http://www.ebi.ac.uk/pdbsum/3l4o PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l4/3l4o_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	MauG is a diheme enzyme responsible for the posttranslational modification of two tryptophan residues to form the tryptophan tryptophylquinone (TTQ) cofactor of methylamine dehydrogenase (MADH). MauG converts preMADH, containing monohydroxylated betaTrp57, to fully functional MADH by catalyzing the insertion of a second oxygen atom into the indole ring and covalently linking betaTrp57 to betaTrp108. We have solved the x-ray crystal structure of MauG complexed with preMADH to 2.1 angstroms. The c-type heme irons and the nascent TTQ site are separated by long distances over which electron transfer must occur to achieve catalysis. In addition, one of the hemes has an atypical His-Tyr axial ligation. The crystalline protein complex is catalytically competent; upon addition of hydrogen peroxide, MauG-dependent TTQ synthesis occurs.

-	~~{{STRUCTURE_3l4o\| PDB=3l4o \| SCENE= }}~~	+	In crystallo posttranslational modification within a MauG/pre-methylamine dehydrogenase complex.,Jensen LM, Sanishvili R, Davidson VL, Wilmot CM Science. 2010 Mar 12;327(5971):1392-4. PMID:20223990<ref>PMID:20223990</ref>

-	~~===Crystal Structure~~ of the ~~MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20223990}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3l4o]] is a 6 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].~~	+

	==See Also==		==See Also==
	*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]		*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020223990<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Amine dehydrogenase]]		[[Category: Amine dehydrogenase]]
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
-	[[Category: Jensen, L M.R.]]	+	[[Category: Jensen, L M.R]]
-	[[Category: Wilmot, C M.]]	+	[[Category: Wilmot, C M]]
	[[Category: C-heme]]		[[Category: C-heme]]
	[[Category: Disulfide bond]]		[[Category: Disulfide bond]]

OCA at 06:34, 20 October 2012

OCA — Sat, 20 Oct 2012 06:34:56 GMT

←Older revision		Revision as of 06:34, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3l4o]] is a 6 chain structure ~~of [[Methylamine dehydrogenase]]~~ with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].	+	[[3l4o]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].

	==See Also==		==See Also==

OCA: Protected "3l4o" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 13:39:08 GMT

Protected "3l4o" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:39, 25 July 2012

OCA at 13:39, 25 July 2012

OCA — Wed, 25 Jul 2012 13:39:07 GMT

←Older revision		Revision as of 13:39, 25 July 2012
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-	{{Seed}}
	[[Image:3l4o.png\|left\|200px]]		[[Image:3l4o.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3l4o", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3l4o\| PDB=3l4o \| SCENE= }}		{{STRUCTURE_3l4o\| PDB=3l4o \| SCENE= }}

	===Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide===		===Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20223990}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20223990 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20223990}}		{{ABSTRACT_PUBMED_20223990}}

	==About this Structure==		==About this Structure==
-	~~3L4O~~ is a 6 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].	+	[[3l4o]] is a 6 chain structure of [[Methylamine dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].
		+
		+	==See Also==
		+	*[[Methylamine dehydrogenase\|Methylamine dehydrogenase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20223990~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020223990</ref><references group="xtra"/>
	[[Category: Amine dehydrogenase]]		[[Category: Amine dehydrogenase]]
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
Line 38:		Line 29:
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Oxidoreductase-electron transport complex]]		[[Category: Oxidoreductase-electron transport complex]]
-	[[Category: Periplasm]]
-	[[Category: Plasmid]]
	[[Category: Quinone cofactor]]		[[Category: Quinone cofactor]]
	[[Category: Transport]]		[[Category: Transport]]
	[[Category: Ttq]]		[[Category: Ttq]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:06:29 2010''

OCA at 10:06, 31 March 2010

OCA — Wed, 31 Mar 2010 10:06:29 GMT

←Older revision		Revision as of 10:06, 31 March 2010
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	{{Seed}}		{{Seed}}
-	[[Image:3l4o.~~jpg~~\|left\|200px]]	+	[[Image:3l4o.png\|left\|200px]]

	<!--		<!--
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	===Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide===		===Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20223990}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20223990 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20223990}}

	==About this Structure==		==About this Structure==
	3L4O is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].		3L4O is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20223990</ref><references group="xtra"/>
	[[Category: Amine dehydrogenase]]		[[Category: Amine dehydrogenase]]
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
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	[[Category: Ttq]]		[[Category: Ttq]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar ~~24 09~~:04:27 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:06:29 2010''

OCA at 07:04, 24 March 2010

OCA — Wed, 24 Mar 2010 07:04:29 GMT

←Older revision		Revision as of 07:04, 24 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3l4o.jpg\|left\|200px]]

-	The ~~entry 3l4o~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3l4o", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3l4o\| PDB=3l4o \| SCENE= }}

-	~~Authors: Jensen, L.M.R., Wilmot, C.M.~~	+	===Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide===

-	Description: Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex After Treatment with Hydrogen Peroxide

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Dec 30 13~~:48:~~41 2009~~''	+	==About this Structure==
		+	3L4O is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L4O OCA].
		+	[[Category: Amine dehydrogenase]]
		+	[[Category: Paracoccus denitrificans]]
		+	[[Category: Jensen, L M.R.]]
		+	[[Category: Wilmot, C M.]]
		+	[[Category: C-heme]]
		+	[[Category: Disulfide bond]]
		+	[[Category: Electron transport]]
		+	[[Category: His-tyr heme]]
		+	[[Category: Iron]]
		+	[[Category: Maug]]
		+	[[Category: Metal-binding]]
		+	[[Category: Methylamine dehydrogenase]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Oxidoreductase-electron transport complex]]
		+	[[Category: Periplasm]]
		+	[[Category: Plasmid]]
		+	[[Category: Quinone cofactor]]
		+	[[Category: Transport]]
		+	[[Category: Ttq]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 09:04:27 2010''