3l75 - Revision history

OCA at 08:32, 6 September 2023

OCA — Wed, 06 Sep 2023 08:32:21 GMT

←Older revision		Revision as of 08:32, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='3l75' size='340' side='right'caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>		<StructureSection load='3l75' size='340' side='right'caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3L75 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L75 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.79Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l70\|3l70]], [[3l71\|3l71]], [[3l72\|3l72]], [[3l73\|3l73]], [[3l74\|3l74]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [https://pdbe.org/3l75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [https://www.ebi.ac.uk/pdbsum/3l75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l75 ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquinol--cytochrome-c_reductase Ubiquinol--cytochrome-c reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.2.2 1.10.2.2] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [~~http~~://pdbe.org/3l75 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3l75 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3l75 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/D0VX30_CHICK D0VX30_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (By similarity).[PIRNR:PIRNR000022] [[http://www.uniprot.org/uniprot/CYB_CHICK CYB_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). [[http://www.uniprot.org/uniprot/UCRI_CHICK UCRI_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). [[http://www.uniprot.org/uniprot/D0VX28_CHICK D0VX28_CHICK]] This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.[PIRNR:PIRNR000019]	+	[https://www.uniprot.org/uniprot/D0VX31_CHICK D0VX31_CHICK]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
-	*[[Cytochrome bc1 ~~complex~~\|Cytochrome bc1 ~~complex~~]]	+	*[[Cytochrome bc1 3D structures\|Cytochrome bc1 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Ubiquinol--cytochrome-c reductase]]~~	+	[[Category: Berry EA]]
-	[[Category: Berry~~, E A~~]]	+	[[Category: Huang L]]
-	[[Category: Huang, L]]	+
-	~~[[Category: Azoxystrobin oxidoreductase]]~~	+
-	~~[[Category: Complex iii]]~~	+
-	~~[[Category: Cytochrome b]]~~	+
-	~~[[Category: Cytochrome bc1]]~~	+
-	~~[[Category: Cytochrome c1]]~~	+
-	~~[[Category: Disulfide bond]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Heme protein]]~~	+
-	~~[[Category: Inner membrane]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Iron-sulfur]]~~	+
-	~~[[Category: Membrane]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Mitochondrial inner membrane]]~~	+
-	~~[[Category: Mitochondrial processing protein]]~~	+
-	~~[[Category: Mitochondrion]]~~	+
-	~~[[Category: Mitochondrion inner membrane]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Redox enzyme respiratory chain]]~~	+
-	~~[[Category: Respiratory chain]]~~	+
-	~~[[Category: Rieske iron sulfur protein]]~~	+
-	~~[[Category: Stigmatellin]]~~	+
-	~~[[Category: Strobilurins binding]]~~	+
-	~~[[Category: Transit peptide]]~~	+
-	~~[[Category: Transmembrane]]~~	+
-	~~[[Category: Transport]]~~	+
-	~~[[Category: Ubiquinone~~]]	+

OCA at 13:38, 25 December 2019

OCA — Wed, 25 Dec 2019 13:38:25 GMT

←Older revision		Revision as of 13:38, 25 December 2019
Line 1:		Line 1:

	==Cytochrome BC1 complex from chicken with fenamidone bound==		==Cytochrome BC1 complex from chicken with fenamidone bound==
-	<StructureSection load='3l75' size='340' side='right' caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>	+	<StructureSection load='3l75' size='340' side='right'caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>
Line 22:		Line 22:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l75 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l75 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Cytochrome bc1 complex\|Cytochrome bc1 complex]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Ubiquinol--cytochrome-c reductase]]		[[Category: Ubiquinol--cytochrome-c reductase]]
	[[Category: Berry, E A]]		[[Category: Berry, E A]]

OCA at 06:47, 15 February 2018

OCA — Thu, 15 Feb 2018 06:47:52 GMT

←Older revision		Revision as of 06:47, 15 February 2018
Line 16:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l7/3l75_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l7/3l75_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:50, 1 November 2017

OCA — Wed, 01 Nov 2017 08:50:19 GMT

←Older revision		Revision as of 08:50, 1 November 2017
Line 1:		Line 1:
		+
	==Cytochrome BC1 complex from chicken with fenamidone bound==		==Cytochrome BC1 complex from chicken with fenamidone bound==
	<StructureSection load='3l75' size='340' side='right' caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>		<StructureSection load='3l75' size='340' side='right' caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chick Chick~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l70\|3l70]], [[3l71\|3l71]], [[3l72\|3l72]], [[3l73\|3l73]], [[3l74\|3l74]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l70\|3l70]], [[3l71\|3l71]], [[3l72\|3l72]], [[3l73\|3l73]], [[3l74\|3l74]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquinol--cytochrome-c_reductase Ubiquinol--cytochrome-c reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.2.2 1.10.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquinol--cytochrome-c_reductase Ubiquinol--cytochrome-c reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.2.2 1.10.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://pdbe.org/3l75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://pdbe.org/3l75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l75 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 22:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l75 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l75 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Cytochrome bc1 complex\|Cytochrome bc1 complex]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chick~~]]	+	[[Category: Gallus gallus]]
	[[Category: Ubiquinol--cytochrome-c reductase]]		[[Category: Ubiquinol--cytochrome-c reductase]]
	[[Category: Berry, E A]]		[[Category: Berry, E A]]

OCA at 04:18, 10 February 2016

OCA — Wed, 10 Feb 2016 04:18:14 GMT

←Older revision		Revision as of 04:18, 10 February 2016
Line 7:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l70\|3l70]], [[3l71\|3l71]], [[3l72\|3l72]], [[3l73\|3l73]], [[3l74\|3l74]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l70\|3l70]], [[3l71\|3l71]], [[3l72\|3l72]], [[3l73\|3l73]], [[3l74\|3l74]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquinol--cytochrome-c_reductase Ubiquinol--cytochrome-c reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.2.2 1.10.2.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquinol--cytochrome-c_reductase Ubiquinol--cytochrome-c reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.2.2 1.10.2.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://pdbe.org/3l75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l75 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 11:45, 25 December 2014

OCA — Thu, 25 Dec 2014 11:45:07 GMT

←Older revision		Revision as of 11:45, 25 December 2014
Line 2:		Line 2:
	<StructureSection load='3l75' size='340' side='right' caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>		<StructureSection load='3l75' size='340' side='right' caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Gallus_gallus Gallus gallus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/D0VX30_CHICK D0VX30_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (By similarity).[PIRNR:PIRNR000022] [[http://www.uniprot.org/uniprot/CYB_CHICK CYB_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). [[http://www.uniprot.org/uniprot/UCRI_CHICK UCRI_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). [[http://www.uniprot.org/uniprot/D0VX28_CHICK D0VX28_CHICK]] This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.[PIRNR:PIRNR000019]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Cytochrome bc1 complex\|Cytochrome bc1 complex]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Gallus gallus~~]]	+	[[Category: Chick]]
	[[Category: Ubiquinol--cytochrome-c reductase]]		[[Category: Ubiquinol--cytochrome-c reductase]]
-	[[Category: Berry, E A.]]	+	[[Category: Berry, E A]]
-	[[Category: Huang, L.]]	+	[[Category: Huang, L]]
	[[Category: Azoxystrobin oxidoreductase]]		[[Category: Azoxystrobin oxidoreductase]]
	[[Category: Complex iii]]		[[Category: Complex iii]]

OCA at 09:25, 29 October 2014

OCA — Wed, 29 Oct 2014 09:25:52 GMT

←Older revision		Revision as of 09:25, 29 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3l75\| PDB=3l75 \| SCENE= }}~~	+	==Cytochrome BC1 complex from chicken with fenamidone bound==
-	===Cytochrome BC1 complex from chicken with fenamidone bound===	+	<StructureSection load='3l75' size='340' side='right' caption='[[3l75]], [[Resolution\|resolution]] 2.79Å' scene=''>
-		+	== Structural highlights ==
-	==~~Function~~==	+	<table><tr><td colspan='2'>[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L75 FirstGlance]. <br>
-	[[http://~~www~~.~~uniprot~~.org/~~uniprot~~/~~D0VX30_CHICK D0VX30_CHICK~~]] ~~Component of~~ the ~~ubiquinol~~-~~cytochrome c reductase complex (complex III or cytochrome~~ b-~~c1 complex~~), ~~which is part of the mitochondrial respiratory chain~~ (~~By similarity~~).[~~PIRNR~~:~~PIRNR000022~~] [[http://~~www~~.~~uniprot~~.org/~~uniprot~~/~~CYB_CHICK CYB_CHICK]] Component of the ubiquinol~~-cytochrome c reductase ~~complex (complex III or cytochrome~~ b-~~c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity)~~. [[http://www.~~uniprot~~.org/~~uniprot~~/~~UCRI_CHICK UCRI_CHICK~~]~~] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex)~~, ~~which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity)~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CDL:CARDIOLIPIN'>CDL</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FNM:(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE'>FNM</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PEE:1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE'>PEE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>, <scene name='pdbligand=UQ:COENZYME+Q10,+(2Z,6E,10Z,14E,18E,22E,26Z)-ISOMER'>UQ</scene></td></tr>
-		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
-	==~~About this Structure~~==	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3l70\|3l70]], [[3l71\|3l71]], [[3l72\|3l72]], [[3l73\|3l73]], [[3l74\|3l74]]</td></tr>
-	[[~~3l75~~]] ~~is a 20 chain~~ structure ~~with sequence from~~ [http://en.~~wikipedia~~.~~org/wiki~~/~~Gallus_gallus Gallus gallus~~]. ~~Full crystallographic information is~~ available from [http://~~oca~~.~~weizmann~~.ac.il/~~oca-bin~~/~~ocashort~~?id=~~3L75 OCA~~].	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquinol--cytochrome-c_reductase Ubiquinol--cytochrome-c reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.2.2 1.10.2.2] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l75 RCSB], [http://www.ebi.ac.uk/pdbsum/3l75 PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l7/3l75_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Ubiquinol--cytochrome-c reductase]]		[[Category: Ubiquinol--cytochrome-c reductase]]

OCA: Protected "3l75" [edit=sysop:move=sysop]

OCA — Thu, 04 Apr 2013 20:14:39 GMT

Protected "3l75" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:14, 4 April 2013

OCA at 20:14, 4 April 2013

OCA — Thu, 04 Apr 2013 20:14:30 GMT

←Older revision		Revision as of 20:14, 4 April 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3l75.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3l75", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3l75\| PDB=3l75 \| SCENE= }}		{{STRUCTURE_3l75\| PDB=3l75 \| SCENE= }}
-
	===Cytochrome BC1 complex from chicken with fenamidone bound===		===Cytochrome BC1 complex from chicken with fenamidone bound===

		+	==Function==
		+	[[http://www.uniprot.org/uniprot/D0VX30_CHICK D0VX30_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (By similarity).[PIRNR:PIRNR000022] [[http://www.uniprot.org/uniprot/CYB_CHICK CYB_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity). [[http://www.uniprot.org/uniprot/UCRI_CHICK UCRI_CHICK]] Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (By similarity).

	==About this Structure==		==About this Structure==
-	~~3L75~~ is a 20 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA].	+	[[3l75]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA].
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Ubiquinol--cytochrome-c reductase]]		[[Category: Ubiquinol--cytochrome-c reductase]]
	[[Category: Berry, E A.]]		[[Category: Berry, E A.]]
	[[Category: Huang, L.]]		[[Category: Huang, L.]]
-	[[Category: 2fe-2]]
	[[Category: Azoxystrobin oxidoreductase]]		[[Category: Azoxystrobin oxidoreductase]]
	[[Category: Complex iii]]		[[Category: Complex iii]]
Line 39:		Line 30:
	[[Category: Mitochondrion]]		[[Category: Mitochondrion]]
	[[Category: Mitochondrion inner membrane]]		[[Category: Mitochondrion inner membrane]]
		+	[[Category: Oxidoreductase]]
	[[Category: Redox enzyme respiratory chain]]		[[Category: Redox enzyme respiratory chain]]
	[[Category: Respiratory chain]]		[[Category: Respiratory chain]]
Line 48:		Line 40:
	[[Category: Transport]]		[[Category: Transport]]
	[[Category: Ubiquinone]]		[[Category: Ubiquinone]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 3 10:02:12 2010''

OCA at 08:02, 3 February 2010

OCA — Wed, 03 Feb 2010 08:02:13 GMT

←Older revision		Revision as of 08:02, 3 February 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3l75.jpg\|left\|200px]]

-	The ~~entry 3l75~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3l75", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3l75\| PDB=3l75 \| SCENE= }}

-	~~Authors: Huang, L., Berry, E.A.~~	+	===Cytochrome BC1 complex from chicken with fenamidone bound===

-	Description: CYTOCHROME BC1 COMPLEX FROM CHICKEN WITH FENAMIDONE BOUND

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan~~ ~~6 09~~:14:22 2010''	+	==About this Structure==
		+	3L75 is a 20 chains structure with sequences from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L75 OCA].
		+	[[Category: Gallus gallus]]
		+	[[Category: Ubiquinol--cytochrome-c reductase]]
		+	[[Category: Berry, E A.]]
		+	[[Category: Huang, L.]]
		+	[[Category: 2fe-2]]
		+	[[Category: Azoxystrobin oxidoreductase]]
		+	[[Category: Complex iii]]
		+	[[Category: Cytochrome b]]
		+	[[Category: Cytochrome bc1]]
		+	[[Category: Cytochrome c1]]
		+	[[Category: Disulfide bond]]
		+	[[Category: Electron transport]]
		+	[[Category: Heme]]
		+	[[Category: Heme protein]]
		+	[[Category: Inner membrane]]
		+	[[Category: Iron]]
		+	[[Category: Iron-sulfur]]
		+	[[Category: Membrane]]
		+	[[Category: Membrane protein]]
		+	[[Category: Metal-binding]]
		+	[[Category: Mitochondrial inner membrane]]
		+	[[Category: Mitochondrial processing protein]]
		+	[[Category: Mitochondrion]]
		+	[[Category: Mitochondrion inner membrane]]
		+	[[Category: Redox enzyme respiratory chain]]
		+	[[Category: Respiratory chain]]
		+	[[Category: Rieske iron sulfur protein]]
		+	[[Category: Stigmatellin]]
		+	[[Category: Strobilurins binding]]
		+	[[Category: Transit peptide]]
		+	[[Category: Transmembrane]]
		+	[[Category: Transport]]
		+	[[Category: Ubiquinone]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 3 10:02:12 2010''