3l9y - Revision history

OCA at 16:22, 1 November 2023

OCA — Wed, 01 Nov 2023 16:22:22 GMT

←Older revision		Revision as of 16:22, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3l9y' size='340' side='right'caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3l9y' size='340' side='right'caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bommo Bommo~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>~~, ~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>SOD1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~7091 BOMMO])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [https://pdbe.org/3l9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [https://www.ebi.ac.uk/pdbsum/3l9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l9y ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [https://pdbe.org/3l9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [https://www.ebi.ac.uk/pdbsum/3l9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l9y ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SODC_BOMMO SODC_BOMMO]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[UniProtKB:P00441]	+	[https://www.uniprot.org/uniprot/SODC_BOMMO SODC_BOMMO] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[UniProtKB:P00441]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bommo~~]]	+	[[Category: Bombyx mori]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Superoxide dismutase]]~~	+	[[Category: Chen Y]]
-	[[Category: Chen, Y]]	+	[[Category: He Y-X]]
-	[[Category: He, Y X]]	+	[[Category: Li W-F]]
-	[[Category: Li, W F]]	+	[[Category: Teng Y-B]]
-	[[Category: Teng, Y B]]	+	[[Category: Yan L-F]]
-	[[Category: Yan, L F]]	+	[[Category: Yu J]]
-	[[Category: Yu, J]]	+	[[Category: Zhang G-Z]]
-	[[Category: Zhang, G Z]]	+	[[Category: Zhang N-N]]
-	[[Category: Zhang, N N]]	+	[[Category: Zhao F]]
-	[[Category: Zhao, F]]	+	[[Category: Zhou C-Z]]
-	[[Category: Zhou, C Z]]	+
-	~~[[Category: Antioxidant]]~~	+
-	~~[[Category: Copper]]~~	+
-	~~[[Category: Cytoplasm]]~~	+
-	~~[[Category: Greek-key-barrel]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 07:53, 10 November 2021

OCA — Wed, 10 Nov 2021 07:53:19 GMT

←Older revision		Revision as of 07:53, 10 November 2021
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	<StructureSection load='3l9y' size='340' side='right'caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3l9y' size='340' side='right'caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SOD1 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 BOMMO])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SOD1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 BOMMO])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [~~http~~://pdbe.org/3l9y PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3l9y PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3l9y ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [https://pdbe.org/3l9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [https://www.ebi.ac.uk/pdbsum/3l9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l9y ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SODC_BOMMO SODC_BOMMO]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[UniProtKB:P00441]	+	[[https://www.uniprot.org/uniprot/SODC_BOMMO SODC_BOMMO]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[UniProtKB:P00441]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Superoxide ~~Dismutase~~\|Superoxide ~~Dismutase~~]]	+	*[[Superoxide dismutase 3D structures\|Superoxide dismutase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:50, 25 December 2019

OCA — Wed, 25 Dec 2019 09:50:36 GMT

←Older revision		Revision as of 09:50, 25 December 2019
Line 1:		Line 1:

	==Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis==		==Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis==
-	<StructureSection load='3l9y' size='340' side='right' caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='3l9y' size='340' side='right'caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>		<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l9/3l9y_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l9/3l9y_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l9y ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l9y ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Superoxide Dismutase\|Superoxide Dismutase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bommo]]		[[Category: Bommo]]
		+	[[Category: Large Structures]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]

OCA at 08:52, 1 November 2017

OCA — Wed, 01 Nov 2017 08:52:11 GMT

←Older revision		Revision as of 08:52, 1 November 2017
Line 21:		Line 21:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l9y ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l9y ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Superoxide Dismutase\|Superoxide Dismutase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
Line 39:		Line 36:
	[[Category: Zhou, C Z]]		[[Category: Zhou, C Z]]
	[[Category: Antioxidant]]		[[Category: Antioxidant]]
		+	[[Category: Copper]]
		+	[[Category: Cytoplasm]]
	[[Category: Greek-key-barrel]]		[[Category: Greek-key-barrel]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 12:39, 5 August 2016

OCA — Fri, 05 Aug 2016 12:39:58 GMT

←Older revision		Revision as of 12:39, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis==		==Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis==
	<StructureSection load='3l9y' size='340' side='right' caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='3l9y' size='340' side='right' caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bombyx_mori Bombyx mori~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SOD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 ~~Bombyx mori~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SOD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 BOMMO])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [http://www.ebi.ac.uk/pdbsum/3l9y PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [http://pdbe.org/3l9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [http://www.ebi.ac.uk/pdbsum/3l9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l9y ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3l9y ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bombyx mori~~]]	+	[[Category: Bommo]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]

OCA at 02:31, 25 December 2014

OCA — Thu, 25 Dec 2014 02:31:36 GMT

←Older revision		Revision as of 02:31, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [http://www.ebi.ac.uk/pdbsum/3l9y PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [http://www.ebi.ac.uk/pdbsum/3l9y PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SODC_BOMMO SODC_BOMMO]] Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity).[UniProtKB:P00441]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:47, 9 December 2014

OCA — Tue, 09 Dec 2014 09:47:23 GMT

←Older revision		Revision as of 09:47, 9 December 2014
Line 1:		Line 1:
-	~~[[Image:3l9y.png\|left\|200px]]~~	+	==Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis==
-		+	<StructureSection load='3l9y' size='340' side='right' caption='[[3l9y]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~{{STRUCTURE_3l9y\| PDB=3l9y \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L9Y FirstGlance]. <br>
-	===Crystal structures of holo and Cu-deficient Cu/ZnSOD from the silkworm Bombyx mori and the implications in Amyotrophic lateral sclerosis===	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SOD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 Bombyx mori])</td></tr>
-		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
-	==~~About this Structure~~==	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3l9y RCSB], [http://www.ebi.ac.uk/pdbsum/3l9y PDBsum]</span></td></tr>
-	[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA].	+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l9/3l9y_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Superoxide Dismutase\|Superoxide Dismutase]]		*[[Superoxide Dismutase\|Superoxide Dismutase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Bombyx mori]]		[[Category: Bombyx mori]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
-	[[Category: Chen, Y.]]	+	[[Category: Chen, Y]]
-	[[Category: He, Y X.]]	+	[[Category: He, Y X]]
-	[[Category: Li, W F.]]	+	[[Category: Li, W F]]
-	[[Category: Teng, Y B.]]	+	[[Category: Teng, Y B]]
-	[[Category: Yan, L F.]]	+	[[Category: Yan, L F]]
-	[[Category: Yu, J.]]	+	[[Category: Yu, J]]
-	[[Category: Zhang, G Z.]]	+	[[Category: Zhang, G Z]]
-	[[Category: Zhang, N N.]]	+	[[Category: Zhang, N N]]
-	[[Category: Zhao, F.]]	+	[[Category: Zhao, F]]
-	[[Category: Zhou, C Z.]]	+	[[Category: Zhou, C Z]]
	[[Category: Antioxidant]]		[[Category: Antioxidant]]
	[[Category: Greek-key-barrel]]		[[Category: Greek-key-barrel]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 11:40, 20 October 2012

OCA — Sat, 20 Oct 2012 11:40:15 GMT

←Older revision		Revision as of 11:40, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3l9y]] is a 2 chain structure ~~of [[Superoxide Dismutase]]~~ with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA].	+	[[3l9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA].

	==See Also==		==See Also==

OCA: Protected "3l9y" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 06:12:11 GMT

Protected "3l9y" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:12, 26 July 2012

OCA at 06:12, 26 July 2012

OCA — Thu, 26 Jul 2012 06:12:07 GMT

←Older revision		Revision as of 06:12, 26 July 2012
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-	~~{{Seed}}~~	+	[[Image:3l9y.png\|left\|200px]]
-	[[Image:3l9y.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3l9y", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_3l9y\| PDB=3l9y \| SCENE= }}		{{STRUCTURE_3l9y\| PDB=3l9y \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~3L9Y~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA].	+	[[3l9y]] is a 2 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L9Y OCA].
		+
		+	==See Also==
		+	*[[Superoxide Dismutase\|Superoxide Dismutase]]
	[[Category: Bombyx mori]]		[[Category: Bombyx mori]]
	[[Category: Superoxide dismutase]]		[[Category: Superoxide dismutase]]
Line 28:		Line 24:
	[[Category: Zhou, C Z.]]		[[Category: Zhou, C Z.]]
	[[Category: Antioxidant]]		[[Category: Antioxidant]]
-	[[Category: Copper]]
-	[[Category: Cytoplasm]]
	[[Category: Greek-key-barrel]]		[[Category: Greek-key-barrel]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 09:04:52 2010''