3lg3 - Revision history

OCA at 06:58, 2 January 2019

OCA — Wed, 02 Jan 2019 06:58:55 GMT

←Older revision		Revision as of 06:58, 2 January 2019
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lg3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lg3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 13:56, 4 August 2016

OCA — Thu, 04 Aug 2016 13:56:43 GMT

←Older revision		Revision as of 13:56, 4 August 2016
Line 1:		Line 1:
		+
	==1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92==		==1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92==
	<StructureSection load='3lg3' size='340' side='right' caption='[[3lg3]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='3lg3' size='340' side='right' caption='[[3lg3]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Yersinia_pestis Yersinia~~ pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LG3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pestis"_(lehmann_and_neumann_1896)_migula_1900 "bacillus pestis" (lehmann and neumann 1896) migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LG3 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aceA, y0016, YPO3725, YP_3087 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 ~~Yersinia~~ pestis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aceA, y0016, YPO3725, YP_3087 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_lyase Isocitrate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.1 4.1.3.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_lyase Isocitrate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.1 4.1.3.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lg3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lg3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg3 OCA], [http://pdbe.org/3lg3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lg3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lg3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lg3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lg3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Isocitrate lyase]]		[[Category: Isocitrate lyase]]
-	[[Category: Yersinia pestis]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]
	[[Category: Brunzelle, J S]]		[[Category: Brunzelle, J S]]

OCA at 23:02, 3 January 2015

OCA — Sat, 03 Jan 2015 23:02:11 GMT

←Older revision		Revision as of 23:02, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LG3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LG3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aceA, y0016, YPO3725, YP_3087 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 Yersinia pestis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aceA, y0016, YPO3725, YP_3087 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 Yersinia pestis])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_lyase Isocitrate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.1 4.1.3.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_lyase Isocitrate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.1 4.1.3.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lg3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lg3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lg3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lg3 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	[[Category: Isocitrate lyase]]		[[Category: Isocitrate lyase]]
	[[Category: Yersinia pestis]]		[[Category: Yersinia pestis]]
-	[[Category: Anderson, W F.]]	+	[[Category: Anderson, W F]]
-	[[Category: Brunzelle, J S.]]	+	[[Category: Brunzelle, J S]]
-	[[Category: ~~CSGID, Center for~~ Structural ~~Genomics of Infectious Diseases.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Sharma, S S.]]	+	[[Category: Sharma, S S]]
-	[[Category: Skarina, T.]]	+	[[Category: Skarina, T]]
	[[Category: Cd]]		[[Category: Cd]]
-	[[Category: Center for structural genomics of infectious disease]]
	[[Category: Conserved]]		[[Category: Conserved]]
	[[Category: Csgid]]		[[Category: Csgid]]
	[[Category: Drug target function]]		[[Category: Drug target function]]
-	[[Category: Isocitrate lyase]]
	[[Category: Lyase]]		[[Category: Lyase]]
-	[[Category: Structural genomic]]

OCA at 09:38, 21 May 2014

OCA — Wed, 21 May 2014 09:38:34 GMT

←Older revision		Revision as of 09:38, 21 May 2014
Line 1:		Line 1:
-	~~[[Image:3lg3.png\|left\|200px]]~~	+	==1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92==
-		+	<StructureSection load='3lg3' size='340' side='right' caption='[[3lg3]], [[Resolution\|resolution]] 1.40Å' scene=''>
-	~~<!--~~	+	== Structural highlights ==
-	~~The line below this paragraph, containing "STRUCTURE_3lg3", creates the "Structure Box" on the page.~~	+	<table><tr><td colspan='2'>[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LG3 FirstGlance]. <br>
-	~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">aceA, y0016, YPO3725, YP_3087 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=632 Yersinia pestis])</td></tr>
-	~~or leave the SCENE parameter empty for the default display.~~	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Isocitrate_lyase Isocitrate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.3.1 4.1.3.1] </span></td></tr>
-	~~-->~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lg3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lg3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lg3 PDBsum]</span></td></tr>
-	~~{{STRUCTURE_3lg3\| PDB=3lg3 \| SCENE= }}~~	+	<table>
-		+	== Evolutionary Conservation ==
-	===1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92===	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-		+	Check<jmol>
-		+	<jmolCheckbox>
-	==~~About this Structure~~==	+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lg3_consurf.spt"</scriptWhenChecked>
-	[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA].	+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Isocitrate lyase]]		[[Category: Isocitrate lyase]]
	[[Category: Yersinia pestis]]		[[Category: Yersinia pestis]]

OCA: Protected "3lg3" [edit=sysop:move=sysop]

OCA — Wed, 14 Dec 2011 10:35:19 GMT

Protected "3lg3" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:35, 14 December 2011

OCA at 10:35, 14 December 2011

OCA — Wed, 14 Dec 2011 10:35:17 GMT

←Older revision		Revision as of 10:35, 14 December 2011
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3lg3.png\|left\|200px]]
-	[[Image:3lg3.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 14:		Line 13:

	==About this Structure==		==About this Structure==
-	~~3LG3~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA].	+	[[3lg3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA].
	[[Category: Isocitrate lyase]]		[[Category: Isocitrate lyase]]
	[[Category: Yersinia pestis]]		[[Category: Yersinia pestis]]
	[[Category: Anderson, W F.]]		[[Category: Anderson, W F.]]
	[[Category: Brunzelle, J S.]]		[[Category: Brunzelle, J S.]]
-	[[Category: ~~Diseases~~, Center for Structural Genomics of Infectious.]]	+	[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
	[[Category: Savchenko, A.]]		[[Category: Savchenko, A.]]
	[[Category: Sharma, S S.]]		[[Category: Sharma, S S.]]
Line 31:		Line 30:
	[[Category: Lyase]]		[[Category: Lyase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 14 09:52:09 2010''

OCA at 06:52, 14 April 2010

OCA — Wed, 14 Apr 2010 06:52:11 GMT

←Older revision		Revision as of 06:52, 14 April 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3lg3.jpg\|left\|200px]]

-	The ~~entry 3lg3~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3lg3", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3lg3\| PDB=3lg3 \| SCENE= }}

-	~~Authors: Sharma, S~~.~~S., Brunzelle, J.S., Skarina, T., Savchenko, A., Anderson, W.F., Center for Structural Genomics~~ of ~~Infectious Diseases~~	+	===1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92===

-	Description: 1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 27 19~~:19:05 2010''	+	==About this Structure==
		+	3LG3 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LG3 OCA].
		+	[[Category: Isocitrate lyase]]
		+	[[Category: Yersinia pestis]]
		+	[[Category: Anderson, W F.]]
		+	[[Category: Brunzelle, J S.]]
		+	[[Category: Diseases, Center for Structural Genomics of Infectious.]]
		+	[[Category: Savchenko, A.]]
		+	[[Category: Sharma, S S.]]
		+	[[Category: Skarina, T.]]
		+	[[Category: Cd]]
		+	[[Category: Center for structural genomics of infectious disease]]
		+	[[Category: Conserved]]
		+	[[Category: Csgid]]
		+	[[Category: Drug target function]]
		+	[[Category: Isocitrate lyase]]
		+	[[Category: Lyase]]
		+	[[Category: Structural genomic]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 14 09:52:09 2010''

OCA: New page: '''Unreleased structure''' The entry 3lg3 is ON HOLD Authors: Sharma, S.S., Brunzelle, J.S., Skarina, T., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Dis...

OCA — Wed, 27 Jan 2010 17:19:05 GMT

New page: '''Unreleased structure''' The entry 3lg3 is ON HOLD Authors: Sharma, S.S., Brunzelle, J.S., Skarina, T., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Dis...

New page

'''Unreleased structure'''

The entry 3lg3 is ON HOLD

Authors: Sharma, S.S., Brunzelle, J.S., Skarina, T., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases

Description: 1.4A Crystal Structure of Isocitrate Lyase from Yersinia pestis CO92

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 27 19:19:05 2010''