3lzx - Revision history

OCA at 16:27, 1 November 2023

OCA — Wed, 01 Nov 2023 16:27:55 GMT

←Older revision		Revision as of 16:27, 1 November 2023
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	<StructureSection load='3lzx' size='340' side='right'caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3lzx' size='340' side='right'caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LZX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LZX FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FAD:FLAVIN~~-~~ADENINE+DINUCLEOTIDE'>FAD</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[3lzw\|3lzw]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[https~~:~~//en.wikipedia.org/wiki/Ferredoxin--~~NADP(+~~)_reductase Ferredoxin~~--~~NADP(~~+~~) reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [https://pdbe.org/3lzx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [https://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [https://pdbe.org/3lzx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [https://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FENR2_BACSU FENR2_BACSU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Higuchi, Y]]	+	[[Category: Higuchi Y]]
-	[[Category: Komori, H]]	+	[[Category: Komori H]]
-	[[Category: Sakurai, T]]	+	[[Category: Sakurai T]]
-	[[Category: Seo, D]]	+	[[Category: Seo D]]
-	~~[[Category: Fad]]~~	+
-	~~[[Category: Ferredoxin reductase]]~~	+
-	~~[[Category: Flavoprotein]]~~	+
-	~~[[Category: Nadp]]~~	+
-	~~[[Category: Nadph]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 07:32, 20 July 2022

OCA — Wed, 20 Jul 2022 07:32:43 GMT

←Older revision		Revision as of 07:32, 20 July 2022
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	<StructureSection load='3lzx' size='340' side='right'caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3lzx' size='340' side='right'caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3LZX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LZX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3lzw\|3lzw]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [~~http~~://pdbe.org/3lzx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [https://pdbe.org/3lzx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [https://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:38, 14 October 2020

OCA — Wed, 14 Oct 2020 06:38:46 GMT

←Older revision		Revision as of 06:38, 14 October 2020
Line 1:		Line 1:

	==Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)==		==Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)==
-	<StructureSection load='3lzx' size='340' side='right' caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='3lzx' size='340' side='right'caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3LZX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3LZX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [http://pdbe.org/3lzx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [http://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [http://pdbe.org/3lzx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [http://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
		+	[[Category: Large Structures]]
	[[Category: Higuchi, Y]]		[[Category: Higuchi, Y]]
	[[Category: Komori, H]]		[[Category: Komori, H]]

OCA at 06:54, 9 January 2019

OCA — Wed, 09 Jan 2019 06:54:58 GMT

←Older revision		Revision as of 06:54, 9 January 2019
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	<StructureSection load='3lzx' size='340' side='right' caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3lzx' size='340' side='right' caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LZX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LZX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Higuchi, Y]]		[[Category: Higuchi, Y]]
	[[Category: Komori, H]]		[[Category: Komori, H]]

OCA at 08:26, 4 August 2016

OCA — Thu, 04 Aug 2016 08:26:18 GMT

←Older revision		Revision as of 08:26, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)==		==Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)==
	<StructureSection load='3lzx' size='340' side='right' caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='3lzx' size='340' side='right' caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LZX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LZX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [http://www.ebi.ac.uk/pdbsum/3lzx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [http://pdbe.org/3lzx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [http://www.ebi.ac.uk/pdbsum/3lzx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lzx ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3lzx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Higuchi, Y]]		[[Category: Higuchi, Y]]
	[[Category: Komori, H]]		[[Category: Komori, H]]

OCA at 15:45, 18 December 2014

OCA — Thu, 18 Dec 2014 15:45:28 GMT

←Older revision		Revision as of 15:45, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3lzx\| PDB=3lzx \| SCENE= }}~~	+	==Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)==
-	===Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)===	+	<StructureSection load='3lzx' size='340' side='right' caption='[[3lzx]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{ABSTRACT_PUBMED_20878669}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LZX FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lzw\|3lzw]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lzx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lzx RCSB], [http://www.ebi.ac.uk/pdbsum/3lzx PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacillus subtilis yumC encodes a novel type of ferredoxin-NADP(+) oxidoreductase (FNR) with a primary sequence and oligomeric conformation distinct from those of previously known FNRs. In this study, the crystal structure of B. subtilis FNR (BsFNR) complexed with NADP(+) has been determined. BsFNR features two distinct binding domains for FAD and NADPH in accordance with its structural similarity to Escherichia coli NADPH-thioredoxin reductase (TdR) and TdR-like protein from Thermus thermophilus HB8 (PDB code: 2ZBW). The deduced mode of NADP(+) binding to the BsFNR molecule is nonproductive in that the nicotinamide and isoalloxazine rings are over 15 A apart. A unique C-terminal extension, not found in E. coli TdR but in TdR-like protein from T. thermophilus HB8, covers the re-face of the isoalloxazine moiety of FAD. In particular, Tyr50 in the FAD-binding region and His324 in the C-terminal extension stack on the si- and re-faces of the isoalloxazine ring of FAD, respectively. Aromatic residues corresponding to Tyr50 and His324 are also found in the plastid-type FNR superfamily of enzymes, and the residue corresponding to His324 has been reported to be responsible for nucleotide specificity. In contrast to the plastid-type FNRs, replacement of His324 with Phe or Ser had little effect on the specificity or reactivity of BsFNR with NAD(P)H, whereas replacement of Arg190, which interacts with the 2'-phosphate of NADP(+) , drastically decreased its affinity toward NADPH. This implies that BsFNR adopts the same nucleotide binding mode as the TdR enzyme family and that aromatic residue on the re-face of FAD is hardly relevant to the nucleotide selectivity.

-	~~==About this Structure==~~	+	Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity.,Komori H, Seo D, Sakurai T, Higuchi Y Protein Sci. 2010 Dec;19(12):2279-90. doi: 10.1002/pro.508. Epub 2010 Nov, 3. PMID:20878669<ref>PMID:20878669</ref>
-	~~[[3lzx]] is a 2 chain~~ structure ~~with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis~~ Bacillus subtilis]. ~~Full crystallographic information is available from [http~~:/~~/oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=3LZX OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:020878669</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Higuchi, Y.]]	+	[[Category: Higuchi, Y]]
-	[[Category: Komori, H.]]	+	[[Category: Komori, H]]
-	[[Category: Sakurai, T.]]	+	[[Category: Sakurai, T]]
-	[[Category: Seo, D.]]	+	[[Category: Seo, D]]
	[[Category: Fad]]		[[Category: Fad]]
	[[Category: Ferredoxin reductase]]		[[Category: Ferredoxin reductase]]

OCA: Protected "3lzx" [edit=sysop:move=sysop]

OCA — Wed, 10 Apr 2013 23:01:19 GMT

Protected "3lzx" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:01, 10 April 2013

OCA at 23:01, 10 April 2013

OCA — Wed, 10 Apr 2013 23:01:17 GMT

←Older revision		Revision as of 23:01, 10 April 2013
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-	{{Seed}}
-	[[Image:3lzx.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3lzx", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3lzx\| PDB=3lzx \| SCENE= }}		{{STRUCTURE_3lzx\| PDB=3lzx \| SCENE= }}
-
	===Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)===		===Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20878669}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20878669 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20878669}}		{{ABSTRACT_PUBMED_20878669}}

	==About this Structure==		==About this Structure==
-	~~3LZX~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA].	+	[[3lzx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20878669~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020878669</ref><references group="xtra"/><references/>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Higuchi, Y.]]		[[Category: Higuchi, Y.]]
Line 35:		Line 19:
	[[Category: Nadph]]		[[Category: Nadph]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 8 11:49:44 2010''

OCA at 08:37, 8 December 2010

OCA — Wed, 08 Dec 2010 08:37:42 GMT

←Older revision		Revision as of 08:37, 8 December 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3lzx.jpg\|left\|200px]]

-	The ~~entry 3lzx~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3lzx", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3lzx\| PDB=3lzx \| SCENE= }}

-	~~Authors: Komori, H., Seo, D., Sakurai, T., Higuchi, Y.~~	+	===Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)===

-	Description: Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Mar 24 08~~:37:42 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20878669}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20878669 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20878669}}
		+
		+	==About this Structure==
		+	3LZX is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LZX OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20878669</ref><references group="xtra"/>
		+	[[Category: Bacillus subtilis]]
		+	[[Category: Higuchi, Y.]]
		+	[[Category: Komori, H.]]
		+	[[Category: Sakurai, T.]]
		+	[[Category: Seo, D.]]
		+	[[Category: Fad]]
		+	[[Category: Ferredoxin reductase]]
		+	[[Category: Flavoprotein]]
		+	[[Category: Nadp]]
		+	[[Category: Nadph]]
		+	[[Category: Oxidoreductase]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 8 11:49:44 2010''

OCA at 06:37, 24 March 2010

OCA — Wed, 24 Mar 2010 06:37:42 GMT

←Older revision		Revision as of 06:37, 24 March 2010
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3lzx is ON HOLD	+	The entry 3lzx is ON HOLD until Paper Publication

	Authors: Komori, H., Seo, D., Sakurai, T., Higuchi, Y.		Authors: Komori, H., Seo, D., Sakurai, T., Higuchi, Y.

-	Description: Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis	+	Description: Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar ~~10 13~~:17:41 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:37:42 2010''