3m0f - Revision history

OCA at 10:23, 21 February 2024

OCA — Wed, 21 Feb 2024 10:23:19 GMT

←Older revision		Revision as of 10:23, 21 February 2024
Line 1:		Line 1:

	==Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens==		==Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens==
-	<StructureSection load='3m0f' size='340' side='right' caption='[[3m0f]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='3m0f' size='340' side='right'caption='[[3m0f]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3m0f]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Psef5 Psef5~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3M0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3m0f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_protegens_Pf-5 Pseudomonas protegens Pf-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M0F FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GSH:GLUTATHIONE'>GSH</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[3lxt\|3lxt]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~"><~~b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">PFL_2580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=220664 PSEF5])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m0f OCA], [https://pdbe.org/3m0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m0f RCSB], [https://www.ebi.ac.uk/pdbsum/3m0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m0f ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3m0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m0f OCA], [~~http~~://pdbe.org/3m0f PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3m0f RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3m0f PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3m0f ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q4KDJ6_PSEF5 Q4KDJ6_PSEF5]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m0f ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m0f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Glutathione S-transferase 3D structures\|Glutathione S-transferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Psef5~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Agarwal, R~~]]	+	[[Category: Pseudomonas protegens Pf-5]]
-	[[Category: ~~Burley, S K~~]]	+	[[Category: Agarwal R]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Burley SK]]
-	[[Category: Swaminathan, S]]	+	[[Category: Swaminathan S]]
-	~~[[Category: Glutathione]]~~	+
-	~~[[Category: Gst]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:26, 9 January 2019

OCA — Wed, 09 Jan 2019 07:26:03 GMT

←Older revision		Revision as of 07:26, 9 January 2019
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m0/3m0f_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m0/3m0f_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:10, 11 August 2016

OCA — Thu, 11 Aug 2016 19:10:09 GMT

←Older revision		Revision as of 19:10, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens==		==Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens==
	<StructureSection load='3m0f' size='340' side='right' caption='[[3m0f]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='3m0f' size='340' side='right' caption='[[3m0f]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3m0f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_fluorescens Pseudomonas fluorescens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3m0f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Psef5 Psef5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M0F FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lxt\|3lxt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lxt\|3lxt]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PFL_2580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~294 Pseudomonas fluorescens~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PFL_2580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=220664 PSEF5])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m0f RCSB], [http://www.ebi.ac.uk/pdbsum/3m0f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m0f OCA], [http://pdbe.org/3m0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m0f RCSB], [http://www.ebi.ac.uk/pdbsum/3m0f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m0f ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m0f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pseudomonas fluorescens~~]]	+	[[Category: Psef5]]
	[[Category: Agarwal, R]]		[[Category: Agarwal, R]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 13:38, 6 November 2014

OCA — Thu, 06 Nov 2014 13:38:46 GMT

←Older revision		Revision as of 13:38, 6 November 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3m0f\| PDB=3m0f \| SCENE= }}~~	+	==Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens==
-	===Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens===	+	<StructureSection load='3m0f' size='340' side='right' caption='[[3m0f]], [[Resolution\|resolution]] 1.60Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3m0f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M0F FirstGlance]. <br>
-	[[3m0f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lxt\|3lxt]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PFL_2580 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m0f RCSB], [http://www.ebi.ac.uk/pdbsum/3m0f PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m0/3m0f_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas fluorescens]]		[[Category: Pseudomonas fluorescens]]
-	[[Category: Agarwal, R.]]	+	[[Category: Agarwal, R]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Swaminathan, S.]]	+	[[Category: Swaminathan, S]]
	[[Category: Glutathione]]		[[Category: Glutathione]]
	[[Category: Gst]]		[[Category: Gst]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+	[[Category: PSI, Protein structure initiative]]
-	[[Category: Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "3m0f" [edit=sysop:move=sysop]

OCA — Wed, 10 Apr 2013 23:08:15 GMT

Protected "3m0f" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:08, 10 April 2013

OCA at 23:08, 10 April 2013

OCA — Wed, 10 Apr 2013 23:08:13 GMT

←Older revision		Revision as of 23:08, 10 April 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3m0f.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3m0f", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3m0f\| PDB=3m0f \| SCENE= }}		{{STRUCTURE_3m0f\| PDB=3m0f \| SCENE= }}
-
	===Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens===		===Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens===
-

	==About this Structure==		==About this Structure==
-	~~3M0F~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA].	+	[[3m0f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA].
	[[Category: Pseudomonas fluorescens]]		[[Category: Pseudomonas fluorescens]]
	[[Category: Agarwal, R.]]		[[Category: Agarwal, R.]]
Line 29:		Line 18:
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:49:40 2010''

OCA at 07:49, 17 March 2010

OCA — Wed, 17 Mar 2010 07:49:41 GMT

←Older revision		Revision as of 07:49, 17 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3m0f.jpg\|left\|200px]]

-	The ~~entry 3m0f~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3m0f", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3m0f\| PDB=3m0f \| SCENE= }}

-	~~Authors: Agarwal, Rakhi, Burley, Stephen. K., Swaminathan, Subramanyam, New York Structural GenomiX Research Consortium (NYSGXRC)~~	+	===Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens===

-	Description: Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar ~~10 13~~:18:02 2010''	+	==About this Structure==
		+	3M0F is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M0F OCA].
		+	[[Category: Pseudomonas fluorescens]]
		+	[[Category: Agarwal, R.]]
		+	[[Category: Burley, S K.]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
		+	[[Category: Swaminathan, S.]]
		+	[[Category: Glutathione]]
		+	[[Category: Gst]]
		+	[[Category: New york sgx research center for structural genomic]]
		+	[[Category: Nysgxrc]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transferase]]
		+	[[Category: Unknown function]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:49:40 2010''

OCA: New page: '''Unreleased structure''' The entry 3m0f is ON HOLD Authors: Agarwal, Rakhi, Burley, Stephen. K., Swaminathan, Subramanyam, New York Structural GenomiX Research Consortium (NYSGXRC) D...

OCA — Wed, 10 Mar 2010 11:18:03 GMT

New page: '''Unreleased structure''' The entry 3m0f is ON HOLD Authors: Agarwal, Rakhi, Burley, Stephen. K., Swaminathan, Subramanyam, New York Structural GenomiX Research Consortium (NYSGXRC) D...

New page

'''Unreleased structure'''

The entry 3m0f is ON HOLD

Authors: Agarwal, Rakhi, Burley, Stephen. K., Swaminathan, Subramanyam, New York Structural GenomiX Research Consortium (NYSGXRC)

Description: Crystal structure of Glutathione S Transferase in complex with glutathione from Pseudomonas fluorescens

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 13:18:02 2010''