3m1a - Revision history

OCA at 12:41, 13 October 2021

OCA — Wed, 13 Oct 2021 12:41:20 GMT

←Older revision		Revision as of 12:41, 13 October 2021
Line 1:		Line 1:

	==The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A==		==The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A==
-	<StructureSection load='3m1a' size='340' side='right' caption='[[3m1a]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='3m1a' size='340' side='right'caption='[[3m1a]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3m1a]] is a 10 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"streptomyces_avermitilis"_burg_et_al._1979 "streptomyces avermitilis" burg et al. 1979]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3M1A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3m1a]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/"streptomyces_avermitilis"_burg_et_al._1979 "streptomyces avermitilis" burg et al. 1979]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M1A FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV770, SAV_770 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33903 "Streptomyces avermitilis" Burg et al. 1979])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV770, SAV_770 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33903 "Streptomyces avermitilis" Burg et al. 1979])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3m1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1a OCA], [~~http~~://pdbe.org/3m1a PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3m1a RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3m1a PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3m1a ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1a OCA], [https://pdbe.org/3m1a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m1a RCSB], [https://www.ebi.ac.uk/pdbsum/3m1a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m1a ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/3m1a_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/3m1a_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Streptomyces avermitilis burg et al. 1979]]		[[Category: Streptomyces avermitilis burg et al. 1979]]
		+	[[Category: Large Structures]]
	[[Category: Egorova, O]]		[[Category: Egorova, O]]
	[[Category: Evdokimova, E]]		[[Category: Evdokimova, E]]

OCA at 10:44, 4 August 2016

OCA — Thu, 04 Aug 2016 10:44:09 GMT

←Older revision		Revision as of 10:44, 4 August 2016
Line 1:		Line 1:
		+
	==The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A==		==The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A==
	<StructureSection load='3m1a' size='340' side='right' caption='[[3m1a]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='3m1a' size='340' side='right' caption='[[3m1a]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3m1a]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_avermitilis Streptomyces~~ avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3m1a]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptomyces_avermitilis"_burg_et_al._1979 "streptomyces avermitilis" burg et al. 1979]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1A FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV770, SAV_770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33903 Streptomyces avermitilis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV770, SAV_770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33903 "Streptomyces avermitilis" Burg et al. 1979])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m1a RCSB], [http://www.ebi.ac.uk/pdbsum/3m1a PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1a OCA], [http://pdbe.org/3m1a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m1a RCSB], [http://www.ebi.ac.uk/pdbsum/3m1a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m1a ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m1a ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptomyces avermitilis]]	+	[[Category: Streptomyces avermitilis burg et al. 1979]]
	[[Category: Egorova, O]]		[[Category: Egorova, O]]
	[[Category: Evdokimova, E]]		[[Category: Evdokimova, E]]

OCA at 17:15, 18 December 2014

OCA — Thu, 18 Dec 2014 17:15:47 GMT

←Older revision		Revision as of 17:15, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3m1a\| PDB=3m1a \| SCENE= }}~~	+	==The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A==
-	===The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A===	+	<StructureSection load='3m1a' size='340' side='right' caption='[[3m1a]], [[Resolution\|resolution]] 2.00Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[3m1a]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M1A FirstGlance]. <br>
-	[[3m1a]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA].	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV770, SAV_770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33903 Streptomyces avermitilis])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m1a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m1a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m1a RCSB], [http://www.ebi.ac.uk/pdbsum/3m1a PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/3m1a_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptomyces avermitilis]]		[[Category: Streptomyces avermitilis]]
-	[[Category: Egorova, O.]]	+	[[Category: Egorova, O]]
-	[[Category: Evdokimova, E.]]	+	[[Category: Evdokimova, E]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Stein, A J.]]	+	[[Category: Stein, A J]]
	[[Category: Avermitili]]		[[Category: Avermitili]]
	[[Category: Dehydrogenase]]		[[Category: Dehydrogenase]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi~~]]	+
	[[Category: Short]]		[[Category: Short]]
	[[Category: Streptomyce]]		[[Category: Streptomyce]]
-	[[Category: Structural genomic]]

OCA: Protected "3m1a" [edit=sysop:move=sysop]

OCA — Wed, 10 Apr 2013 23:26:49 GMT

Protected "3m1a" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:26, 10 April 2013

OCA at 23:26, 10 April 2013

OCA — Wed, 10 Apr 2013 23:26:46 GMT

←Older revision		Revision as of 23:26, 10 April 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3m1a.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3m1a", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3m1a\| PDB=3m1a \| SCENE= }}		{{STRUCTURE_3m1a\| PDB=3m1a \| SCENE= }}
-
	===The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A===		===The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A===
-

	==About this Structure==		==About this Structure==
-	~~3M1A~~ is a 10 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA].	+	[[3m1a]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA].
	[[Category: Streptomyces avermitilis]]		[[Category: Streptomyces avermitilis]]
	[[Category: Egorova, O.]]		[[Category: Egorova, O.]]
Line 32:		Line 21:
	[[Category: Streptomyce]]		[[Category: Streptomyce]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 09:08:23 2010''

OCA at 07:08, 24 March 2010

OCA — Wed, 24 Mar 2010 07:08:24 GMT

←Older revision		Revision as of 07:08, 24 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3m1a.jpg\|left\|200px]]

-	The ~~entry 3m1a~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3m1a", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3m1a\| PDB=3m1a \| SCENE= }}

-	~~Authors: Stein, A.J., Evdokimova, E., Egorova, O., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)~~	+	===The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A===

-	Description: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:12:33 2010''	+	==About this Structure==
		+	3M1A is a 10 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M1A OCA].
		+	[[Category: Streptomyces avermitilis]]
		+	[[Category: Egorova, O.]]
		+	[[Category: Evdokimova, E.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: MCSG, Midwest Center for Structural Genomics.]]
		+	[[Category: Savchenko, A.]]
		+	[[Category: Stein, A J.]]
		+	[[Category: Avermitili]]
		+	[[Category: Dehydrogenase]]
		+	[[Category: Mcsg]]
		+	[[Category: Midwest center for structural genomic]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi]]
		+	[[Category: Short]]
		+	[[Category: Streptomyce]]
		+	[[Category: Structural genomic]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 09:08:23 2010''

OCA at 07:12, 17 March 2010

OCA — Wed, 17 Mar 2010 07:12:34 GMT

←Older revision		Revision as of 07:12, 17 March 2010
Line 3:		Line 3:
	The entry 3m1a is ON HOLD		The entry 3m1a is ON HOLD

-	Authors:	+	Authors: Stein, A.J., Evdokimova, E., Egorova, O., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

	Description: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A		Description: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar ~~10 13~~:18:39 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 17 09:12:33 2010''

OCA: New page: '''Unreleased structure''' The entry 3m1a is ON HOLD Authors: Description: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A ''Page seeded by [...

OCA — Wed, 10 Mar 2010 11:18:40 GMT

New page: '''Unreleased structure''' The entry 3m1a is ON HOLD Authors: Description: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A ''Page seeded by [...

New page

'''Unreleased structure'''

The entry 3m1a is ON HOLD

Authors:

Description: The Crystal Structure of a Short-chain Dehydrogenase from Streptomyces avermitilis to 2A

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 13:18:39 2010''