3m5w - Revision history

OCA at 07:45, 9 January 2019

OCA — Wed, 09 Jan 2019 07:45:55 GMT

←Older revision		Revision as of 07:45, 9 January 2019
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/3m5w_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/3m5w_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:27, 11 August 2016

OCA — Thu, 11 Aug 2016 19:27:33 GMT

←Older revision		Revision as of 19:27, 11 August 2016
Line 1:		Line 1:
		+
	==Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni==		==Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni==
	<StructureSection load='3m5w' size='340' side='right' caption='[[3m5w]], [[Resolution\|resolution]] 2.32Å' scene=''>		<StructureSection load='3m5w' size='340' side='right' caption='[[3m5w]], [[Resolution\|resolution]] 2.32Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cj0388, trpS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cj0388, trpS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan--tRNA_ligase Tryptophan--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.2 6.1.1.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan--tRNA_ligase Tryptophan--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.2 6.1.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m5w RCSB], [http://www.ebi.ac.uk/pdbsum/3m5w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m5w OCA], [http://pdbe.org/3m5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m5w RCSB], [http://www.ebi.ac.uk/pdbsum/3m5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m5w ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m5w ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 09:50, 20 January 2015

OCA — Tue, 20 Jan 2015 09:50:01 GMT

←Older revision		Revision as of 09:50, 20 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3m5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M5W FirstGlance]. <br>		<table><tr><td colspan='2'>[[3m5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M5W FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cj0388, trpS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cj0388, trpS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan--tRNA_ligase Tryptophan--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.2 6.1.1.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan--tRNA_ligase Tryptophan--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.2 6.1.1.2] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m5w RCSB], [http://www.ebi.ac.uk/pdbsum/3m5w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m5w RCSB], [http://www.ebi.ac.uk/pdbsum/3m5w PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:
	[[Category: Camje]]		[[Category: Camje]]
	[[Category: Tryptophan--tRNA ligase]]		[[Category: Tryptophan--tRNA ligase]]
-	[[Category: Anderson, W F.]]	+	[[Category: Anderson, W F]]
-	[[Category: ~~CSGID, Center for~~ Structural ~~Genomics of Infectious Diseases.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Hasseman, J.]]	+	[[Category: Hasseman, J]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Kim, Y.]]	+	[[Category: Kim, Y]]
-	[[Category: Zhou, M.]]	+	[[Category: Zhou, M]]
	[[Category: Alpha-beta structure]]		[[Category: Alpha-beta structure]]
	[[Category: Aminoacyl-trna synthetase]]		[[Category: Aminoacyl-trna synthetase]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
-	[[Category: Center for structural genomics of infectious disease]]
	[[Category: Csgid]]		[[Category: Csgid]]
	[[Category: Ligase]]		[[Category: Ligase]]
	[[Category: Nucleotide-binding]]		[[Category: Nucleotide-binding]]
	[[Category: Protein biosynthesis]]		[[Category: Protein biosynthesis]]
-	[[Category: Structural genomic]]
-	[[Category: Structural genomics of infectious disease]]

OCA at 22:30, 1 October 2014

OCA — Wed, 01 Oct 2014 22:30:44 GMT

←Older revision		Revision as of 22:30, 1 October 2014
Line 1:		Line 1:
-	~~[[Image:3m5w.png\|left\|200px]]~~	+	==Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni==
-		+	<StructureSection load='3m5w' size='340' side='right' caption='[[3m5w]], [[Resolution\|resolution]] 2.32Å' scene=''>
-	~~{{STRUCTURE_3m5w\| PDB=3m5w \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[3m5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M5W FirstGlance]. <br>
-	===Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cj0388, trpS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan--tRNA_ligase Tryptophan--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.2 6.1.1.2] </span></td></tr>
-	[[3m5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Campylobacter_jejuni Campylobacter jejuni~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m5w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m5w RCSB], [http://www.ebi.ac.uk/pdbsum/3m5w PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/3m5w_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Aminoacyl tRNA Synthetase\|Aminoacyl tRNA Synthetase]]		*[[Aminoacyl tRNA Synthetase\|Aminoacyl tRNA Synthetase]]
-	[[Category: ~~Campylobacter jejuni~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Camje]]
	[[Category: Tryptophan--tRNA ligase]]		[[Category: Tryptophan--tRNA ligase]]
	[[Category: Anderson, W F.]]		[[Category: Anderson, W F.]]
-	[[Category: ~~Csgid~~]]	+	[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
	[[Category: Hasseman, J.]]		[[Category: Hasseman, J.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]

OCA at 13:18, 20 October 2012

OCA — Sat, 20 Oct 2012 13:18:08 GMT

←Older revision		Revision as of 13:18, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[3m5w]] is a 2 chain structure ~~of [[Aminoacyl tRNA Synthetase]]~~ with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA].	+	[[3m5w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA].

	==See Also==		==See Also==

OCA: Protected "3m5w" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 11:32:00 GMT

Protected "3m5w" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:32, 26 July 2012

OCA at 11:31, 26 July 2012

OCA — Thu, 26 Jul 2012 11:31:58 GMT

←Older revision		Revision as of 11:31, 26 July 2012
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3m5w.png\|left\|200px]]
-	[[Image:3m5w.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3m5w", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3m5w\| PDB=3m5w \| SCENE= }}		{{STRUCTURE_3m5w\| PDB=3m5w \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~3M5W~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA].	+	[[3m5w]] is a 2 chain structure of [[Aminoacyl tRNA Synthetase]] with sequence from [http://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA].
		+
		+	==See Also==
		+	*[[Aminoacyl tRNA Synthetase\|Aminoacyl tRNA Synthetase]]
	[[Category: Campylobacter jejuni]]		[[Category: Campylobacter jejuni]]
	[[Category: Tryptophan--tRNA ligase]]		[[Category: Tryptophan--tRNA ligase]]
Line 28:		Line 24:
	[[Category: Center for structural genomics of infectious disease]]		[[Category: Center for structural genomics of infectious disease]]
	[[Category: Csgid]]		[[Category: Csgid]]
-	[[Category: Cytoplasm]]
	[[Category: Ligase]]		[[Category: Ligase]]
	[[Category: Nucleotide-binding]]		[[Category: Nucleotide-binding]]
Line 34:		Line 29:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Structural genomics of infectious disease]]		[[Category: Structural genomics of infectious disease]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:55:39 2010''

OCA at 10:55, 31 March 2010

OCA — Wed, 31 Mar 2010 10:55:41 GMT

←Older revision		Revision as of 10:55, 31 March 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3m5w.jpg\|left\|200px]]

-	The ~~entry 3m5w~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3m5w", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3m5w\| PDB=3m5w \| SCENE= }}

-	~~Authors: Kim, Y., Zhou, M., Hasseman, J., Anderson, W.F., Joachimiak, A., CSGID~~	+	===Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni===

-	Description: Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar ~~24 08~~:38:45 2010''	+	==About this Structure==
		+	3M5W is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Campylobacter_jejuni Campylobacter jejuni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M5W OCA].
		+	[[Category: Campylobacter jejuni]]
		+	[[Category: Tryptophan--tRNA ligase]]
		+	[[Category: Anderson, W F.]]
		+	[[Category: Csgid]]
		+	[[Category: Hasseman, J.]]
		+	[[Category: Joachimiak, A.]]
		+	[[Category: Kim, Y.]]
		+	[[Category: Zhou, M.]]
		+	[[Category: Alpha-beta structure]]
		+	[[Category: Aminoacyl-trna synthetase]]
		+	[[Category: Atp-binding]]
		+	[[Category: Center for structural genomics of infectious disease]]
		+	[[Category: Csgid]]
		+	[[Category: Cytoplasm]]
		+	[[Category: Ligase]]
		+	[[Category: Nucleotide-binding]]
		+	[[Category: Protein biosynthesis]]
		+	[[Category: Structural genomic]]
		+	[[Category: Structural genomics of infectious disease]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 31 13:55:39 2010''

OCA: New page: '''Unreleased structure''' The entry 3m5w is ON HOLD Authors: Kim, Y., Zhou, M., Hasseman, J., Anderson, W.F., Joachimiak, A., CSGID Description: Crystal Structure of Tryptophanyl-tRNA...

OCA — Wed, 24 Mar 2010 06:38:45 GMT

New page: '''Unreleased structure''' The entry 3m5w is ON HOLD Authors: Kim, Y., Zhou, M., Hasseman, J., Anderson, W.F., Joachimiak, A., CSGID Description: Crystal Structure of Tryptophanyl-tRNA...

New page

'''Unreleased structure'''

The entry 3m5w is ON HOLD

Authors: Kim, Y., Zhou, M., Hasseman, J., Anderson, W.F., Joachimiak, A., CSGID

Description: Crystal Structure of Tryptophanyl-tRNA Synthetase from Campylobacter jejuni

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 24 08:38:45 2010''