3m9w - Revision history

OCA at 16:31, 1 November 2023

OCA — Wed, 01 Nov 2023 16:31:07 GMT

←Older revision		Revision as of 16:31, 1 November 2023
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	<StructureSection load='3m9w' size='340' side='right'caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3m9w' size='340' side='right'caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Escherichia_coli_mg1655~~ Escherichia coli ~~mg1655~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=3M9W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_str._K-12_substr._MG1655 Escherichia coli str. K-12 substr. MG1655]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M9W FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.15Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[3m9x\|3m9x]], [[3ma0\|3ma0]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [~~http~~://pdbe.org/3m9w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3m9w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3m9w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [https://pdbe.org/3m9w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [https://www.ebi.ac.uk/pdbsum/3m9w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m9w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/XYLF_ECOLI XYLF_ECOLI]] Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose.	+	[https://www.uniprot.org/uniprot/XYLF_ECOLI XYLF_ECOLI] Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Escherichia coli ~~mg1655~~]]	+	[[Category: Escherichia coli str. K-12 substr. MG1655]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Mowbray~~, S L~~]]	+	[[Category: Mowbray SL]]
-	[[Category: Sooriyaarachchi, S]]	+	[[Category: Sooriyaarachchi S]]
-	[[Category: Ubhayasekera, W]]	+	[[Category: Ubhayasekera W]]
-	~~[[Category: Conformational change]]~~	+
-	~~[[Category: Sugar binding protein]]~~	+
-	~~[[Category: Xylose]]~~	+
-	~~[[Category: Xylose binding protein~~]]	+

OCA at 06:40, 14 October 2020

OCA — Wed, 14 Oct 2020 06:40:23 GMT

←Older revision		Revision as of 06:40, 14 October 2020
Line 1:		Line 1:

	==Open ligand-free crystal structure of xylose binding protein from Escherichia coli==		==Open ligand-free crystal structure of xylose binding protein from Escherichia coli==
-	<StructureSection load='3m9w' size='340' side='right' caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>	+	<StructureSection load='3m9w' size='340' side='right'caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_mg1655 Escherichia coli mg1655]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3M9W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_mg1655 Escherichia coli mg1655]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3M9W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://pdbe.org/3m9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m9w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://pdbe.org/3m9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m9w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli mg1655]]		[[Category: Escherichia coli mg1655]]
		+	[[Category: Large Structures]]
	[[Category: Mowbray, S L]]		[[Category: Mowbray, S L]]
	[[Category: Sooriyaarachchi, S]]		[[Category: Sooriyaarachchi, S]]

OCA at 07:41, 9 January 2019

OCA — Wed, 09 Jan 2019 07:41:19 GMT

←Older revision		Revision as of 07:41, 9 January 2019
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/3m9w_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/3m9w_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 23:19, 5 August 2016

OCA — Fri, 05 Aug 2016 23:19:56 GMT

←Older revision		Revision as of 23:19, 5 August 2016
Line 1:		Line 1:
		+
	==Open ligand-free crystal structure of xylose binding protein from Escherichia coli==		==Open ligand-free crystal structure of xylose binding protein from Escherichia coli==
	<StructureSection load='3m9w' size='340' side='right' caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='3m9w' size='340' side='right' caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://pdbe.org/3m9w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m9w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3m9w ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3m9w" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:44, 25 December 2014

OCA — Thu, 25 Dec 2014 06:44:36 GMT

←Older revision		Revision as of 06:44, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_mg1655 Escherichia coli mg1655]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M9W FirstGlance]. <br>		<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_mg1655 Escherichia coli mg1655]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M9W FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYLF_ECOLI XYLF_ECOLI]] Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 25:
	Conformational Changes and Ligand Recognition of Escherichia colid-Xylose Binding Protein Revealed.,Sooriyaarachchi S, Ubhayasekera W, Park C, Mowbray SL J Mol Biol. 2010 Aug 1. PMID:20678502<ref>PMID:20678502</ref>		Conformational Changes and Ligand Recognition of Escherichia colid-Xylose Binding Protein Revealed.,Sooriyaarachchi S, Ubhayasekera W, Park C, Mowbray SL J Mol Biol. 2010 Aug 1. PMID:20678502<ref>PMID:20678502</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli mg1655]]		[[Category: Escherichia coli mg1655]]
-	[[Category: Mowbray, S L.]]	+	[[Category: Mowbray, S L]]
-	[[Category: Sooriyaarachchi, S.]]	+	[[Category: Sooriyaarachchi, S]]
-	[[Category: Ubhayasekera, W.]]	+	[[Category: Ubhayasekera, W]]
	[[Category: Conformational change]]		[[Category: Conformational change]]
	[[Category: Sugar binding protein]]		[[Category: Sugar binding protein]]
	[[Category: Xylose]]		[[Category: Xylose]]
	[[Category: Xylose binding protein]]		[[Category: Xylose binding protein]]

OCA at 13:08, 18 May 2014

OCA — Sun, 18 May 2014 13:08:06 GMT

←Older revision		Revision as of 13:08, 18 May 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3m9w\| PDB=3m9w \| SCENE= }}~~	+	==Open ligand-free crystal structure of xylose binding protein from Escherichia coli==
-	===Open ligand-free crystal structure of xylose binding protein from Escherichia coli===	+	<StructureSection load='3m9w' size='340' side='right' caption='[[3m9w]], [[Resolution\|resolution]] 2.15Å' scene=''>
-	~~{{ABSTRACT_PUBMED_20678502}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3m9w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_mg1655 Escherichia coli mg1655]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M9W FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3m9x\|3m9x]], [[3ma0\|3ma0]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m9w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m9w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3m9w RCSB], [http://www.ebi.ac.uk/pdbsum/3m9w PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m9/3m9w_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ATP binding cassette transport systems account for most import of necessary nutrients in bacteria. The periplasmic binding component (or an equivalent membrane-anchored protein) is critical to recognizing cognate ligand and directing it to the appropriate membrane permease. Here we report the X-ray structures of d-xylose binding protein from Escherichia coli in ligand-free open form, ligand-bound open form, and ligand-bound closed form at 2.15 A, 2.2 A, and 2.2 A resolutions, respectively. The ligand-bound open form is the first such structure to be reported at high resolution; the combination of the three different forms from the same protein furthermore gives unprecedented details concerning the conformational changes involved in binding protein function. As is typical of the structural family, the protein has two similar globular domains, which are connected by a three-stranded hinge region. The open liganded structure shows that xylose binds first to the C-terminal domain, with only very small conformational changes resulting. After a 34 degrees closing motion, additional interactions are formed with the N-terminal domain; changes in this domain are larger and serve to make the structure more ordered near the ligand. An analysis of the interactions suggests why xylose is the preferred ligand. Furthermore, a comparison with the most closely related proteins in the structural family shows that the conformational changes are distinct in each type of binding protein, which may have implications for how the individual proteins act in concert with their respective membrane permeases.

-	~~==Function==~~	+	Conformational Changes and Ligand Recognition of Escherichia colid-Xylose Binding Protein Revealed.,Sooriyaarachchi S, Ubhayasekera W, Park C, Mowbray SL J Mol Biol. 2010 Aug 1. PMID:20678502<ref>PMID:20678502</ref>
-	~~[[http://www~~.~~uniprot~~.~~org~~/~~uniprot/XYLF_ECOLI XYLF_ECOLI]] Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose.~~	+

-	~~==About this Structure==~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-	~~[[3m9w]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA].~~	+	</div>
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:020678502</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
-	[[Category: Escherichia coli]]	+	</StructureSection>
		+	[[Category: Escherichia coli mg1655]]
	[[Category: Mowbray, S L.]]		[[Category: Mowbray, S L.]]
	[[Category: Sooriyaarachchi, S.]]		[[Category: Sooriyaarachchi, S.]]

OCA: Protected "3m9w" [edit=sysop:move=sysop]

OCA — Wed, 10 Apr 2013 23:25:20 GMT

Protected "3m9w" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:25, 10 April 2013

OCA at 23:25, 10 April 2013

OCA — Wed, 10 Apr 2013 23:25:17 GMT

←Older revision		Revision as of 23:25, 10 April 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3m9w.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3m9w", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3m9w\| PDB=3m9w \| SCENE= }}		{{STRUCTURE_3m9w\| PDB=3m9w \| SCENE= }}
-
	===Open ligand-free crystal structure of xylose binding protein from Escherichia coli===		===Open ligand-free crystal structure of xylose binding protein from Escherichia coli===
		+	{{ABSTRACT_PUBMED_20678502}}

-		+	==Function==
-	~~<!--~~	+	[[http://www.uniprot.org/uniprot/XYLF_ECOLI XYLF_ECOLI]] Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose.
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_20678502}}, adds the Publication Abstract to the page~~	+
-	~~(as it appears on PubMed at~~ http://www.~~pubmed~~.~~gov), where 20678502 is~~ the ~~PubMed ID number.~~	+
-	-->	+
-	~~{{ABSTRACT_PUBMED_20678502}}~~	+

	==About this Structure==		==About this Structure==
-	~~3M9W~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA].	+	[[3m9w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20678502~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020678502</ref><references group="xtra"/><references/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Mowbray, S L.]]		[[Category: Mowbray, S L.]]
Line 32:		Line 19:
	[[Category: Xylose]]		[[Category: Xylose]]
	[[Category: Xylose binding protein]]		[[Category: Xylose binding protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 18 11:44:37 2010''

OCA at 07:37, 18 August 2010

OCA — Wed, 18 Aug 2010 07:37:06 GMT

←Older revision		Revision as of 07:37, 18 August 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3m9w.jpg\|left\|200px]]

-	The ~~entry 3m9w~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3m9w", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3m9w\| PDB=3m9w \| SCENE= }}

-	~~Authors: Sooriyaarachchi, S., Ubhayasekera, W., Mowbray, S.L.~~	+	===Open ligand-free crystal structure of xylose binding protein from Escherichia coli===

-	Description: Open ligand-free crystal structure of xylose binding protein from Escherichia coli

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Apr 21 09~~:36:32 2010''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20678502}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20678502 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20678502}}
		+
		+	==About this Structure==
		+	3M9W is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M9W OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20678502</ref><references group="xtra"/>
		+	[[Category: Escherichia coli]]
		+	[[Category: Mowbray, S L.]]
		+	[[Category: Sooriyaarachchi, S.]]
		+	[[Category: Ubhayasekera, W.]]
		+	[[Category: Conformational change]]
		+	[[Category: Sugar binding protein]]
		+	[[Category: Xylose]]
		+	[[Category: Xylose binding protein]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 18 11:44:37 2010''

OCA at 06:36, 21 April 2010

OCA — Wed, 21 Apr 2010 06:36:33 GMT

←Older revision		Revision as of 06:36, 21 April 2010
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3m9w is ON HOLD	+	The entry 3m9w is ON HOLD until Paper Publication

	Authors: Sooriyaarachchi, S., Ubhayasekera, W., Mowbray, S.L.		Authors: Sooriyaarachchi, S., Ubhayasekera, W., Mowbray, S.L.
Line 7:		Line 7:
	Description: Open ligand-free crystal structure of xylose binding protein from Escherichia coli		Description: Open ligand-free crystal structure of xylose binding protein from Escherichia coli

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Mar 31 13~~:23:39 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 21 09:36:32 2010''