3n2i - Revision history

OCA at 09:07, 6 September 2023

OCA — Wed, 06 Sep 2023 09:07:15 GMT

←Older revision		Revision as of 09:07, 6 September 2023
Line 1:		Line 1:

	==2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine==		==2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine==
-	<StructureSection load='3n2i' size='340' side='right' caption='[[3n2i]], [[Resolution\|resolution]] 2.25Å' scene=''>	+	<StructureSection load='3n2i' size='340' side='right'caption='[[3n2i]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3n2i]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Vibch Vibch~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3N2I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3n2i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N2I FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Related_structure~~\|~~Related:]]</b></td><td class="sblockDat">[[3lv8\|3lv8~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>tmk, VC_2016 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~243277 VIBCH])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [https://pdbe.org/3n2i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [https://www.ebi.ac.uk/pdbsum/3n2i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n2i ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/dTMP_kinase dTMP kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.9 2.7.4.9]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [~~http~~://pdbe.org/3n2i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3n2i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3n2i ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH]] Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).	+	[https://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH] Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n2/3n2i_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n2/3n2i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2i ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Thymidylate kinase 3D structures\|Thymidylate kinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibch~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~DTMP kinase~~]]	+	[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
-	[[Category: Anderson~~, W F]]~~	+	[[Category: Anderson WF]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Dubrovska I]]
-	[[Category: Dubrovska, I]]	+	[[Category: Halavaty AS]]
-	[[Category: Halavaty~~, A S~~]]	+	[[Category: Minasov G]]
-	[[Category: Minasov, G]]	+	[[Category: Peterson S]]
-	[[Category: Peterson, S]]	+	[[Category: Shuvalova L]]
-	[[Category: Shuvalova, L]]	+	[[Category: Winsor J]]
-	[[Category: Winsor, J]]	+
-	~~[[Category: Atp-binding]]~~	+
-	~~[[Category: Csgid]]~~	+
-	~~[[Category: Infectious disease]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: Nucleotide biosynthesis]]~~	+
-	~~[[Category: Nucleotide-binding]]~~	+
-	~~[[Category: Thymidylate kinase]]~~	+
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Vibrio cholerae~~]]	+

OCA at 08:22, 8 November 2017

OCA — Wed, 08 Nov 2017 08:22:02 GMT

←Older revision		Revision as of 08:22, 8 November 2017
Line 22:		Line 22:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2i ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-
-	==See Also==
-	*[[Thymidylate kinase\|Thymidylate kinase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:01, 5 August 2016

OCA — Fri, 05 Aug 2016 16:01:53 GMT

←Older revision		Revision as of 16:01, 5 August 2016
Line 1:		Line 1:
		+
	==2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine==		==2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine==
	<StructureSection load='3n2i' size='340' side='right' caption='[[3n2i]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='3n2i' size='340' side='right' caption='[[3n2i]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3n2i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N2I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3n2i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibch Vibch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N2I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lv8\|3lv8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lv8\|3lv8]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tmk, VC_2016 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~686 Vibrio cholerae O1 biovar El Tor~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tmk, VC_2016 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 VIBCH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTMP_kinase dTMP kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.9 2.7.4.9] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTMP_kinase dTMP kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.9 2.7.4.9] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [http://www.ebi.ac.uk/pdbsum/3n2i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [http://pdbe.org/3n2i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [http://www.ebi.ac.uk/pdbsum/3n2i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3n2i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 20:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

Line 26:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio cholerae o1 biovar el tor~~]]	+	[[Category: Vibch]]
	[[Category: DTMP kinase]]		[[Category: DTMP kinase]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]

OCA at 03:49, 25 December 2014

OCA — Thu, 25 Dec 2014 03:49:06 GMT

←Older revision		Revision as of 03:49, 25 December 2014
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [http://www.ebi.ac.uk/pdbsum/3n2i PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [http://www.ebi.ac.uk/pdbsum/3n2i PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH]] Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 16:47, 18 December 2014

OCA — Thu, 18 Dec 2014 16:47:50 GMT

←Older revision		Revision as of 16:47, 18 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_3n2i\| PDB=3n2i \| SCENE= }}~~	+	==2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine==
-	===2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine===	+	<StructureSection load='3n2i' size='340' side='right' caption='[[3n2i]], [[Resolution\|resolution]] 2.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3n2i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3N2I FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3lv8\|3lv8]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tmk, VC_2016 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=686 Vibrio cholerae O1 biovar El Tor])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTMP_kinase dTMP kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.9 2.7.4.9] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [http://www.ebi.ac.uk/pdbsum/3n2i PDBsum]</span></td></tr>
		+	</table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n2/3n2i_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

-	==~~Function~~==	+	==See Also==
-	[[~~http://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH~~]] ~~Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).~~	+	*[[Thymidylate kinase\|Thymidylate kinase]]
-		+	__TOC__
-	~~==About this Structure==~~	+	</StructureSection>
-	~~[[3n2i]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA].~~	+
	[[Category: Vibrio cholerae o1 biovar el tor]]		[[Category: Vibrio cholerae o1 biovar el tor]]
	[[Category: DTMP kinase]]		[[Category: DTMP kinase]]
-	[[Category: Anderson, W F.]]	+	[[Category: Anderson, W F]]
-	[[Category: ~~CSGID, Center for~~ Structural ~~Genomics of Infectious Diseases.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Dubrovska, I.]]	+	[[Category: Dubrovska, I]]
-	[[Category: Halavaty, A S.]]	+	[[Category: Halavaty, A S]]
-	[[Category: Minasov, G.]]	+	[[Category: Minasov, G]]
-	[[Category: Peterson, S.]]	+	[[Category: Peterson, S]]
-	[[Category: Shuvalova, L.]]	+	[[Category: Shuvalova, L]]
-	[[Category: Winsor, J.]]	+	[[Category: Winsor, J]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
-	[[Category: Center for structural genomics of infectious disease]]
	[[Category: Csgid]]		[[Category: Csgid]]
	[[Category: Infectious disease]]		[[Category: Infectious disease]]
Line 24:		Line 40:
	[[Category: Nucleotide biosynthesis]]		[[Category: Nucleotide biosynthesis]]
	[[Category: Nucleotide-binding]]		[[Category: Nucleotide-binding]]
-	[[Category: Structural genomic]]
	[[Category: Thymidylate kinase]]		[[Category: Thymidylate kinase]]
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Vibrio cholerae]]		[[Category: Vibrio cholerae]]

OCA: Protected "3n2i" [edit=sysop:move=sysop]

OCA — Wed, 17 Apr 2013 21:03:20 GMT

Protected "3n2i" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:03, 17 April 2013

OCA at 21:03, 17 April 2013

OCA — Wed, 17 Apr 2013 21:03:18 GMT

←Older revision		Revision as of 21:03, 17 April 2013
Line 1:		Line 1:
-	{{Seed}}
-	[[Image:3n2i.jpg\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_3n2i", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3n2i\| PDB=3n2i \| SCENE= }}		{{STRUCTURE_3n2i\| PDB=3n2i \| SCENE= }}
-
	===2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine===		===2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine===

		+	==Function==
		+	[[http://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH]] Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).

	==About this Structure==		==About this Structure==
-	~~3N2I~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/~~Vibrio_cholerae_o1_biovar_el_tor_str._n16961~~ Vibrio cholerae o1 biovar el tor ~~str. n16961~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA].	+	[[3n2i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA].
-	[[Category: Vibrio cholerae o1 biovar el tor ~~str. n16961~~]]	+	[[Category: Vibrio cholerae o1 biovar el tor]]
	[[Category: DTMP kinase]]		[[Category: DTMP kinase]]
	[[Category: Anderson, W F.]]		[[Category: Anderson, W F.]]
Line 36:		Line 28:
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Vibrio cholerae]]		[[Category: Vibrio cholerae]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 2 08:41:11 2010''

OCA at 04:36, 2 June 2010

OCA — Wed, 02 Jun 2010 04:36:44 GMT

←Older revision		Revision as of 04:36, 2 June 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3n2i.jpg\|left\|200px]]

-	The ~~entry 3n2i~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3n2i", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3n2i\| PDB=3n2i \| SCENE= }}

-	~~Authors: Halavaty, A~~.~~S., Minasov, G., Shuvalova, L. , Winsor, J. , Dubrovska, I. , Peterson, S., Anderson, W.F., Center for Structural Genomics~~ of ~~Infectious Diseases~~ (~~CSGID~~)	+	===2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine===

-	Description: 2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~May 26~~ 08:23:27 2010''	+	==About this Structure==
		+	3N2I is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor_str._n16961 Vibrio cholerae o1 biovar el tor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA].
		+	[[Category: Vibrio cholerae o1 biovar el tor str. n16961]]
		+	[[Category: DTMP kinase]]
		+	[[Category: Anderson, W F.]]
		+	[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
		+	[[Category: Dubrovska, I.]]
		+	[[Category: Halavaty, A S.]]
		+	[[Category: Minasov, G.]]
		+	[[Category: Peterson, S.]]
		+	[[Category: Shuvalova, L.]]
		+	[[Category: Winsor, J.]]
		+	[[Category: Atp-binding]]
		+	[[Category: Center for structural genomics of infectious disease]]
		+	[[Category: Csgid]]
		+	[[Category: Infectious disease]]
		+	[[Category: Kinase]]
		+	[[Category: Nucleotide biosynthesis]]
		+	[[Category: Nucleotide-binding]]
		+	[[Category: Structural genomic]]
		+	[[Category: Thymidylate kinase]]
		+	[[Category: Transferase]]
		+	[[Category: Vibrio cholerae]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 2 08:41:11 2010''

OCA: New page: '''Unreleased structure''' The entry 3n2i is ON HOLD Authors: Halavaty, A.S., Minasov, G., Shuvalova, L. , Winsor, J. , Dubrovska, I. , Peterson, S., Anderson, W.F., Center for Structur...

OCA — Wed, 26 May 2010 04:19:15 GMT

New page: '''Unreleased structure''' The entry 3n2i is ON HOLD Authors: Halavaty, A.S., Minasov, G., Shuvalova, L. , Winsor, J. , Dubrovska, I. , Peterson, S., Anderson, W.F., Center for Structur...

New page

'''Unreleased structure'''

The entry 3n2i is ON HOLD

Authors: Halavaty, A.S., Minasov, G., Shuvalova, L. , Winsor, J. , Dubrovska, I. , Peterson, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Description: 2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 26 08:23:27 2010''