3nd5 - Revision history

OCA at 16:45, 1 November 2023

OCA — Wed, 01 Nov 2023 16:45:50 GMT

←Older revision		Revision as of 16:45, 1 November 2023
Line 3:		Line 3:
	<StructureSection load='3nd5' size='340' side='right'caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3nd5' size='340' side='right'caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"enterococcus_proteiformis"_thiercelin_and_jouhaud_1903 "enterococcus proteiformis" thiercelin and jouhaud 1903~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[3nd6\|3nd6]], [[3nd7\|3nd7]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">coaD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 "Enterococcus proteiformis" Thiercelin and Jouhaud 1903])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2~~.7.7~~.3 ~~2.7.7.3] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [https://pdbe.org/3nd5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [https://www.ebi.ac.uk/pdbsum/3nd5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nd5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [https://pdbe.org/3nd5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [https://www.ebi.ac.uk/pdbsum/3nd5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nd5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/COAD_ENTFA COAD_ENTFA]] Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).	+	[https://www.uniprot.org/uniprot/COAD_ENTFA COAD_ENTFA] Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Enterococcus ~~proteiformis thiercelin and jouhaud 1903~~]]	+	[[Category: Enterococcus faecalis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Pantetheine-phosphate adenylyltransferase]]~~	+	[[Category: Lee HH]]
-	[[Category: Lee~~, H H~~]]	+	[[Category: Suh SW]]
-	[[Category: Suh~~, S W~~]]	+	[[Category: Yoon HJ]]
-	[[Category: Yoon~~, H J]]~~	+
-	~~[[Category: Coenzyme a biosynthetic pathway]]~~	+
-	~~[[Category: Phosphopantetheine adenylyltransferase]]~~	+
-	~~[[Category: Ppat]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 06:59, 12 May 2022

OCA — Thu, 12 May 2022 06:59:22 GMT

←Older revision		Revision as of 06:59, 12 May 2022
Line 1:		Line 1:

	==Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis==		==Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis==
-	<StructureSection load='3nd5' size='340' side='right' caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='3nd5' size='340' side='right'caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"enterococcus_proteiformis"_thiercelin_and_jouhaud_1903 "enterococcus proteiformis" thiercelin and jouhaud 1903]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"enterococcus_proteiformis"_thiercelin_and_jouhaud_1903 "enterococcus proteiformis" thiercelin and jouhaud 1903]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3nd6\|3nd6]], [[3nd7\|3nd7]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3nd6\|3nd6]], [[3nd7\|3nd7]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 "Enterococcus proteiformis" Thiercelin and Jouhaud 1903])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 "Enterococcus proteiformis" Thiercelin and Jouhaud 1903])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [~~http~~://pdbe.org/3nd5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3nd5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3nd5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [https://pdbe.org/3nd5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [https://www.ebi.ac.uk/pdbsum/3nd5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nd5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/COAD_ENTFA COAD_ENTFA]] Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).	+	[[https://www.uniprot.org/uniprot/COAD_ENTFA COAD_ENTFA]] Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Enterococcus proteiformis thiercelin and jouhaud 1903]]		[[Category: Enterococcus proteiformis thiercelin and jouhaud 1903]]
		+	[[Category: Large Structures]]
	[[Category: Pantetheine-phosphate adenylyltransferase]]		[[Category: Pantetheine-phosphate adenylyltransferase]]
	[[Category: Lee, H H]]		[[Category: Lee, H H]]

OCA at 11:50, 4 August 2016

OCA — Thu, 04 Aug 2016 11:50:16 GMT

←Older revision		Revision as of 11:50, 4 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis==		==Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis==
	<StructureSection load='3nd5' size='340' side='right' caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3nd5' size='340' side='right' caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterococcus_faecalis Enterococcus faecalis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"enterococcus_proteiformis"_thiercelin_and_jouhaud_1903 "enterococcus proteiformis" thiercelin and jouhaud 1903]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3nd6\|3nd6]], [[3nd7\|3nd7]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3nd6\|3nd6]], [[3nd7\|3nd7]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 Enterococcus ~~faecalis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 "Enterococcus proteiformis" Thiercelin and Jouhaud 1903])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [http://www.ebi.ac.uk/pdbsum/3nd5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [http://pdbe.org/3nd5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [http://www.ebi.ac.uk/pdbsum/3nd5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nd5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3nd5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Enterococcus ~~faecalis~~]]	+	[[Category: Enterococcus proteiformis thiercelin and jouhaud 1903]]
	[[Category: Pantetheine-phosphate adenylyltransferase]]		[[Category: Pantetheine-phosphate adenylyltransferase]]
	[[Category: Lee, H H]]		[[Category: Lee, H H]]

OCA at 14:08, 24 December 2014

OCA — Wed, 24 Dec 2014 14:08:47 GMT

←Older revision		Revision as of 14:08, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3nd6\|3nd6]], [[3nd7\|3nd7]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3nd6\|3nd6]], [[3nd7\|3nd7]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 Enterococcus faecalis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 Enterococcus faecalis])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [http://www.ebi.ac.uk/pdbsum/3nd5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [http://www.ebi.ac.uk/pdbsum/3nd5 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COAD_ENTFA COAD_ENTFA]] Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 16:
	Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine.,Yoon HJ, Kang JY, Mikami B, Lee HH, Suh SW Mol Cells. 2011 Nov;32(5):431-5. Epub 2011 Sep 9. PMID:21912874<ref>PMID:21912874</ref>		Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine.,Yoon HJ, Kang JY, Mikami B, Lee HH, Suh SW Mol Cells. 2011 Nov;32(5):431-5. Epub 2011 Sep 9. PMID:21912874<ref>PMID:21912874</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 22:		Line 24:
	[[Category: Enterococcus faecalis]]		[[Category: Enterococcus faecalis]]
	[[Category: Pantetheine-phosphate adenylyltransferase]]		[[Category: Pantetheine-phosphate adenylyltransferase]]
-	[[Category: Lee, H H.]]	+	[[Category: Lee, H H]]
-	[[Category: Suh, S W.]]	+	[[Category: Suh, S W]]
-	[[Category: Yoon, H J.]]	+	[[Category: Yoon, H J]]
	[[Category: Coenzyme a biosynthetic pathway]]		[[Category: Coenzyme a biosynthetic pathway]]
	[[Category: Phosphopantetheine adenylyltransferase]]		[[Category: Phosphopantetheine adenylyltransferase]]
	[[Category: Ppat]]		[[Category: Ppat]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 10:37, 28 May 2014

OCA — Wed, 28 May 2014 10:37:27 GMT

←Older revision		Revision as of 10:37, 28 May 2014
Line 1:		Line 1:
-	[[~~Image:~~3nd5.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis==
		+	<StructureSection load='3nd5' size='340' side='right' caption='[[3nd5]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ND5 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3nd6\|3nd6]], [[3nd7\|3nd7]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">coaD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1351 Enterococcus faecalis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pantetheine-phosphate_adenylyltransferase Pantetheine-phosphate adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.3 2.7.7.3] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nd5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nd5 RCSB], [http://www.ebi.ac.uk/pdbsum/3nd5 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Phosphopantetheine adenylyltransferase (PPAT) catalyzes the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine (Ppant) to form dephospho-CoA (dPCoA) and pyrophosphate in the Coenzyme A (CoA) biosynthetic pathway. Importantly, PPATs are the potential target for developing antibiotics because bacterial and mammalian PPATs share little sequence homology. Previous structural studies revealed the mechanism of the recognizing substrates and products. The binding modes of ATP, ADP, Ppant, and dPCoA are highly similar in all known structures, whereas the binding modes of CoA or 3'-phosphoadenosine 5'-phosphosulfate binding are novel. To provide further structural information on ligand binding by PPATs, the crystal structure of PPAT from Enterococcus faecalis was solved in three forms: (i) apo form, (ii) binary complex with ATP, and (iii) binary complex with pantetheine. The substrate analog, pantetheine, binds to the active site in a similar manner to Ppant. The new structural information reported in this study including pantetheine as a potent inhibitor of PPAT will supplement the existing structural data and should be useful for structurebased antibacterial discovery against PPATs.

-	<!--	+	Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine.,Yoon HJ, Kang JY, Mikami B, Lee HH, Suh SW Mol Cells. 2011 Nov;32(5):431-5. Epub 2011 Sep 9. PMID:21912874<ref>PMID:21912874</ref>
-	~~The line below this paragraph~~, ~~containing "STRUCTURE_3nd5"~~, ~~creates the "Structure Box" on the page~~.	+
-	~~You may change the PDB parameter~~ (~~which sets the PDB file loaded into the applet~~)	+
-	~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~	+
-	~~or leave the SCENE parameter empty for the default display~~.	+
-	-->	+
-	~~{{STRUCTURE_3nd5\| PDB=3nd5 \| SCENE= }}~~	+

-	~~===Crystal structure~~ of ~~phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	~~<!--~~	+	<references/>
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_21912874}}, adds~~ the ~~Publication Abstract to the page~~	+	__TOC__
-	~~(as it appears on PubMed at http://www~~.~~pubmed~~.~~gov), where 21912874 is the PubMed ID number~~.	+	</StructureSection>
-	-->	+
-	~~{{ABSTRACT_PUBMED_21912874}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3nd5]] is a 6 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA].~~	+
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021912874<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Enterococcus faecalis]]		[[Category: Enterococcus faecalis]]
	[[Category: Pantetheine-phosphate adenylyltransferase]]		[[Category: Pantetheine-phosphate adenylyltransferase]]

OCA at 10:42, 14 December 2011

OCA — Wed, 14 Dec 2011 10:42:56 GMT

←Older revision		Revision as of 10:42, 14 December 2011
Line 1:		Line 1:
-	[[Image:3nd5.~~jpg~~\|left\|200px]]	+	[[Image:3nd5.png\|left\|200px]]

	<!--		<!--
Line 11:		Line 11:
	===Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis===		===Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21912874}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21912874 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21912874}}

	==About this Structure==		==About this Structure==
	[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA].		[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021912874</ref><references group="xtra"/>
	[[Category: Enterococcus faecalis]]		[[Category: Enterococcus faecalis]]
	[[Category: Pantetheine-phosphate adenylyltransferase]]		[[Category: Pantetheine-phosphate adenylyltransferase]]

OCA: Protected "3nd5" [edit=sysop:move=sysop]

OCA — Wed, 22 Jun 2011 16:47:30 GMT

Protected "3nd5" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:47, 22 June 2011

OCA at 16:47, 22 June 2011

OCA — Wed, 22 Jun 2011 16:47:26 GMT

←Older revision		Revision as of 16:47, 22 June 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3nd5.jpg\|left\|200px]]

-	The ~~entry 3nd5~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3nd5", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3nd5\| PDB=3nd5 \| SCENE= }}

-	~~Authors: Yoon, H.J., Lee, H.H., Suh, S.W.~~	+	===Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis===

-	Description: Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis

-	~~''Page seeded by~~ [http://oca.weizmann.ac.il/oca OCA ] ~~on Wed Jul 7 08~~:28:~~43 2010''~~	+	==About this Structure==
		+	[[3nd5]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ND5 OCA].
		+	[[Category: Enterococcus faecalis]]
		+	[[Category: Pantetheine-phosphate adenylyltransferase]]
		+	[[Category: Lee, H H.]]
		+	[[Category: Suh, S W.]]
		+	[[Category: Yoon, H J.]]
		+	[[Category: Coenzyme a biosynthetic pathway]]
		+	[[Category: Phosphopantetheine adenylyltransferase]]
		+	[[Category: Ppat]]
		+	[[Category: Transferase]]

OCA at 04:22, 7 July 2010

OCA — Wed, 07 Jul 2010 04:22:52 GMT

←Older revision		Revision as of 04:22, 7 July 2010
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3nd5 is ON HOLD	+	The entry 3nd5 is ON HOLD until Paper Publication

	Authors: Yoon, H.J., Lee, H.H., Suh, S.W.		Authors: Yoon, H.J., Lee, H.H., Suh, S.W.

-	Description: Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis ~~in the ligand-unbound state and in complex with ATP and pantetheine~~	+	Description: Crystal structure of phosphopantetheine adenylyltransferase (PPAT) from Enterococcus faecalis

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jun 16~~ 08:30:22 2010''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 7 08:28:43 2010''

OCA: New page: '''Unreleased structure''' The entry 3nd5 is ON HOLD Authors: Yoon, H.J., Lee, H.H., Suh, S.W. Description: Crystal structure of phosphopantetheine adenylyltransferase from Enterococcu...

OCA — Wed, 16 Jun 2010 04:25:22 GMT

New page: '''Unreleased structure''' The entry 3nd5 is ON HOLD Authors: Yoon, H.J., Lee, H.H., Suh, S.W. Description: Crystal structure of phosphopantetheine adenylyltransferase from Enterococcu...

New page

'''Unreleased structure'''

The entry 3nd5 is ON HOLD

Authors: Yoon, H.J., Lee, H.H., Suh, S.W.

Description: Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 16 08:30:22 2010''