3or3 - Revision history

OCA at 09:43, 6 September 2023

OCA — Wed, 06 Sep 2023 09:43:34 GMT

←Older revision		Revision as of 09:43, 6 September 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_118 Helicobacter pylori 118]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_118 Helicobacter pylori 118]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3oqg\|3oqg]]~~, ~~[[3mx1\|3mx1]], [[3mx4\|3mx4]], [[3nic\|3nic]], [[2wsh\|2wsh]], [[1mk0\|1mk0]], [[1yd1\|1yd1]]~~<~~/div></td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">hpy188IR, SYNTHETIC GENE CODON OPTIMIZED FOR ESCHERICHIA COLI ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=585532 Helicobacter pylori 118])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [https://pdbe.org/3or3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [https://www.ebi.ac.uk/pdbsum/3or3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3or3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [https://pdbe.org/3or3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [https://www.ebi.ac.uk/pdbsum/3or3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3or3 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9KJ88_HELPX Q9KJ88_HELPX]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 28:		Line 28:
	[[Category: Helicobacter pylori 118]]		[[Category: Helicobacter pylori 118]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bochtler, M]]	+	[[Category: Bochtler M]]
-	[[Category: Czapinska, H]]	+	[[Category: Czapinska H]]
-	[[Category: Sokolowska, M]]	+	[[Category: Sokolowska M]]
-	~~[[Category: Catalytic mechanism]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Endonuclease-dna complex]]~~	+
-	~~[[Category: Giy-yig nuclease]]~~	+
-	~~[[Category: Hpy188i]]~~	+
-	~~[[Category: Hydrolase-dna complex]]~~	+
-	~~[[Category: Intercalation]]~~	+
-	~~[[Category: Pseudopalindrome]]~~	+
-	~~[[Category: Restriction endonuclease]]~~	+
-	~~[[Category: Restriction enzyme~~]]	+

OCA at 10:53, 18 May 2022

OCA — Wed, 18 May 2022 10:53:58 GMT

←Older revision		Revision as of 10:53, 18 May 2022
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	==Restriction endonuclease HPY188I in complex with product DNA==		==Restriction endonuclease HPY188I in complex with product DNA==
-	<StructureSection load='3or3' size='340' side='right' caption='[[3or3]], [[Resolution\|resolution]] 1.95Å' scene=''>	+	<StructureSection load='3or3' size='340' side='right'caption='[[3or3]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Helicobacter_pylori_118 Helicobacter pylori 118]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_118 Helicobacter pylori 118]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3oqg\|3oqg]], [[3mx1\|3mx1]], [[3mx4\|3mx4]], [[3nic\|3nic]], [[2wsh\|2wsh]], [[1mk0\|1mk0]], [[1yd1\|1yd1]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3oqg\|3oqg]], [[3mx1\|3mx1]], [[3mx4\|3mx4]], [[3nic\|3nic]], [[2wsh\|2wsh]], [[1mk0\|1mk0]], [[1yd1\|1yd1]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hpy188IR, SYNTHETIC GENE CODON OPTIMIZED FOR ESCHERICHIA COLI ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=585532 Helicobacter pylori 118])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hpy188IR, SYNTHETIC GENE CODON OPTIMIZED FOR ESCHERICHIA COLI ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=585532 Helicobacter pylori 118])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [~~http~~://pdbe.org/3or3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3or3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3or3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [https://pdbe.org/3or3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [https://www.ebi.ac.uk/pdbsum/3or3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3or3 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 3or3" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3or3" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Endonuclease 3D structures\|Endonuclease 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Helicobacter pylori 118]]		[[Category: Helicobacter pylori 118]]
		+	[[Category: Large Structures]]
	[[Category: Bochtler, M]]		[[Category: Bochtler, M]]
	[[Category: Czapinska, H]]		[[Category: Czapinska, H]]

OCA at 08:49, 8 November 2017

OCA — Wed, 08 Nov 2017 08:49:54 GMT

←Older revision		Revision as of 08:49, 8 November 2017
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 3or3" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3or3" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Endonuclease\|Endonuclease]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 03:55, 10 December 2016

OCA — Sat, 10 Dec 2016 03:55:07 GMT

←Older revision		Revision as of 03:55, 10 December 2016
Line 1:		Line 1:
		+
	==Restriction endonuclease HPY188I in complex with product DNA==		==Restriction endonuclease HPY188I in complex with product DNA==
	<StructureSection load='3or3' size='340' side='right' caption='[[3or3]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='3or3' size='340' side='right' caption='[[3or3]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Helicobacter_pylori~~ Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_118 Helicobacter pylori 118]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3oqg\|3oqg]], [[3mx1\|3mx1]], [[3mx4\|3mx4]], [[3nic\|3nic]], [[2wsh\|2wsh]], [[1mk0\|1mk0]], [[1yd1\|1yd1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3oqg\|3oqg]], [[3mx1\|3mx1]], [[3mx4\|3mx4]], [[3nic\|3nic]], [[2wsh\|2wsh]], [[1mk0\|1mk0]], [[1yd1\|1yd1]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hpy188IR, SYNTHETIC GENE CODON OPTIMIZED FOR ESCHERICHIA COLI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~210~~ Helicobacter pylori])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hpy188IR, SYNTHETIC GENE CODON OPTIMIZED FOR ESCHERICHIA COLI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=585532 Helicobacter pylori 118])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [http://www.ebi.ac.uk/pdbsum/3or3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [http://pdbe.org/3or3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [http://www.ebi.ac.uk/pdbsum/3or3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3or3 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3or3" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 24:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Helicobacter pylori]]	+	[[Category: Helicobacter pylori 118]]
	[[Category: Bochtler, M]]		[[Category: Bochtler, M]]
	[[Category: Czapinska, H]]		[[Category: Czapinska, H]]

OCA at 12:34, 9 December 2014

OCA — Tue, 09 Dec 2014 12:34:57 GMT

←Older revision		Revision as of 12:34, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3or3.~~png~~\|~~left~~\|~~200px~~]]	+	==Restriction endonuclease HPY188I in complex with product DNA==
		+	<StructureSection load='3or3' size='340' side='right' caption='[[3or3]], [[Resolution\|resolution]] 1.95Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3or3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OR3 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3oqg\|3oqg]], [[3mx1\|3mx1]], [[3mx4\|3mx4]], [[3nic\|3nic]], [[2wsh\|2wsh]], [[1mk0\|1mk0]], [[1yd1\|1yd1]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hpy188IR, SYNTHETIC GENE CODON OPTIMIZED FOR ESCHERICHIA COLI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210 Helicobacter pylori])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3or3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3or3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3or3 RCSB], [http://www.ebi.ac.uk/pdbsum/3or3 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The GIY-YIG nuclease domain is present in all kingdoms of life and has diverse functions. It is found in the eukaryotic flap endonuclease and Holliday junction resolvase Slx1-Slx4, the prokaryotic nucleotide excision repair proteins UvrC and Cho, and in proteins of 'selfish' genetic elements. Here we present the structures of the ternary pre- and post-cleavage complexes of the type II GIY-YIG restriction endonuclease Hpy188I with DNA and a surrogate or catalytic metal ion, respectively. Our structures suggest that GIY-YIG nucleases catalyze DNA hydrolysis by a single substitution reaction. They are consistent with a previous proposal that a tyrosine residue (which we expect to occur in its phenolate form) acts as a general base for the attacking water molecule. In contrast to the earlier proposal, our data identify the general base with the GIY and not the YIG tyrosine. A conserved glutamate residue (Glu149 provided in trans in Hpy188I) anchors a single metal cation in the active site. This metal ion contacts the phosphate proS oxygen atom and the leaving group 3'-oxygen atom, presumably to facilitate its departure. Taken together, our data reveal striking analogy in the absence of homology between GIY-YIG and betabetaalpha-Me nucleases.

-	~~{{STRUCTURE_3or3\| PDB=3or3 \| SCENE= }}~~	+	Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis.,Sokolowska M, Czapinska H, Bochtler M Nucleic Acids Res. 2010 Oct 8. PMID:20935048<ref>PMID:20935048</ref>

-	~~===Restriction endonuclease HPY188I in complex with product DNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_20935048}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3or3]] is~~ a ~~6 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Helicobacter_pylori Helicobacter pylori]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].~~	+

	==See Also==		==See Also==
	*[[Endonuclease\|Endonuclease]]		*[[Endonuclease\|Endonuclease]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:020935048<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
-	[[Category: Bochtler, M.]]	+	[[Category: Bochtler, M]]
-	[[Category: Czapinska, H.]]	+	[[Category: Czapinska, H]]
-	[[Category: Sokolowska, M.]]	+	[[Category: Sokolowska, M]]
	[[Category: Catalytic mechanism]]		[[Category: Catalytic mechanism]]
	[[Category: Dna]]		[[Category: Dna]]

OCA at 14:09, 20 October 2012

OCA — Sat, 20 Oct 2012 14:09:42 GMT

←Older revision		Revision as of 14:09, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[3or3]] is a 6 chain structure ~~of [[Endonuclease]]~~ with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].	+	[[3or3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].

	==See Also==		==See Also==

OCA at 14:15, 26 July 2012

OCA — Thu, 26 Jul 2012 14:15:20 GMT

←Older revision		Revision as of 14:15, 26 July 2012
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	[[Image:3or3.png\|left\|200px]]		[[Image:3or3.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_3or3\| PDB=3or3 \| SCENE= }}		{{STRUCTURE_3or3\| PDB=3or3 \| SCENE= }}

	===Restriction endonuclease HPY188I in complex with product DNA===		===Restriction endonuclease HPY188I in complex with product DNA===

-
-	<!--
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-	(as it appears on PubMed at http://www.pubmed.gov), where 20935048 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20935048}}		{{ABSTRACT_PUBMED_20935048}}

	==About this Structure==		==About this Structure==
-	[[3or3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].	+	[[3or3]] is a 6 chain structure of [[Endonuclease]] with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].
		+
		+	==See Also==
		+	*[[Endonuclease\|Endonuclease]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~20935048~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020935048</ref><references group="xtra"/>
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
	[[Category: Bochtler, M.]]		[[Category: Bochtler, M.]]
	[[Category: Czapinska, H.]]		[[Category: Czapinska, H.]]
	[[Category: Sokolowska, M.]]		[[Category: Sokolowska, M.]]
		+	[[Category: Catalytic mechanism]]
		+	[[Category: Dna]]
		+	[[Category: Endonuclease-dna complex]]
		+	[[Category: Giy-yig nuclease]]
		+	[[Category: Hpy188i]]
		+	[[Category: Hydrolase-dna complex]]
		+	[[Category: Intercalation]]
		+	[[Category: Pseudopalindrome]]
		+	[[Category: Restriction endonuclease]]
		+	[[Category: Restriction enzyme]]

OCA: Protected "3or3" [edit=sysop:move=sysop]

OCA — Wed, 05 Jan 2011 15:41:42 GMT

Protected "3or3" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:41, 5 January 2011

OCA at 15:41, 5 January 2011

OCA — Wed, 05 Jan 2011 15:41:41 GMT

←Older revision		Revision as of 15:41, 5 January 2011
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:3or3.png\|left\|200px]]
-	[[Image:3or3.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 12:		Line 11:
	===Restriction endonuclease HPY188I in complex with product DNA===		===Restriction endonuclease HPY188I in complex with product DNA===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_20935048}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 20935048 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_20935048}}

	==About this Structure==		==About this Structure==
-	~~3OR3~~ is a 6 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].	+	[[3or3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:20935048</ref><references group="xtra"/>
	[[Category: Helicobacter pylori]]		[[Category: Helicobacter pylori]]
	[[Category: Bochtler, M.]]		[[Category: Bochtler, M.]]
	[[Category: Czapinska, H.]]		[[Category: Czapinska, H.]]
	[[Category: Sokolowska, M.]]		[[Category: Sokolowska, M.]]
-	[[Category: Catalytic mechanism]]
-	[[Category: Dna]]
-	[[Category: Endonuclease-dna complex]]
-	[[Category: Giy-yig nuclease]]
-	[[Category: Hpy188i]]
-	[[Category: Hydrolase-dna complex]]
-	[[Category: Intercalation]]
-	[[Category: Pseudopalindrome]]
-	[[Category: Restriction endonuclease]]
-	[[Category: Restriction enzyme]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 20 06:40:44 2010''

OCA at 03:30, 20 October 2010

OCA — Wed, 20 Oct 2010 03:30:40 GMT

←Older revision		Revision as of 03:30, 20 October 2010
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:3or3.jpg\|left\|200px]]

-	The ~~entry 3or3~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3or3", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3or3\| PDB=3or3 \| SCENE= }}

-	~~Authors: Sokolowska, M., Czapinska, H., Bochtler, M.~~	+	===Restriction endonuclease HPY188I in complex with product DNA===

-	Description: Restriction endonuclease HPY188I in complex with product DNA

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Sep 15 10~~:38:58 2010''	+	==About this Structure==
		+	3OR3 is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OR3 OCA].
		+	[[Category: Helicobacter pylori]]
		+	[[Category: Bochtler, M.]]
		+	[[Category: Czapinska, H.]]
		+	[[Category: Sokolowska, M.]]
		+	[[Category: Catalytic mechanism]]
		+	[[Category: Dna]]
		+	[[Category: Endonuclease-dna complex]]
		+	[[Category: Giy-yig nuclease]]
		+	[[Category: Hpy188i]]
		+	[[Category: Hydrolase-dna complex]]
		+	[[Category: Intercalation]]
		+	[[Category: Pseudopalindrome]]
		+	[[Category: Restriction endonuclease]]
		+	[[Category: Restriction enzyme]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 20 06:40:44 2010''