3pxp - Revision history

OCA at 11:49, 1 February 2023

OCA — Wed, 01 Feb 2023 11:49:49 GMT

←Older revision		Revision as of 11:49, 1 February 2023
Line 3:		Line 3:
	<StructureSection load='3pxp' size='340' side='right'caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3pxp' size='340' side='right'caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Chlaa Chlaa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PXP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chloroflexus_aurantiacus_J-10-fl Chloroflexus aurantiacus J-10-fl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PXP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=~~MYR~~:~~MYRISTIC+ACID~~'>~~MYR~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=324602 CHLAA])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [https://pdbe.org/3pxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [https://www.ebi.ac.uk/pdbsum/3pxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pxp ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [https://pdbe.org/3pxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [https://www.ebi.ac.uk/pdbsum/3pxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pxp ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A9WGF5_CHLAA A9WGF5_CHLAA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chlaa~~]]	+	[[Category: Chloroflexus aurantiacus J-10-fl]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: Basic helix-loop-helix motif]]
-	[[Category: Bhlh motif]]
-	[[Category: Dna-binding]]
-	[[Category: Jcsg]]
-	[[Category: Lambda repressor-like dna-binding fold]]
-	[[Category: Pas domain]]
-	[[Category: Per arnt sim domain]]
-	[[Category: Profilin-like fold]]
-	[[Category: PSI, Protein structure initiative]]
-	[[Category: Psi-biology]]
-	[[Category: Transcription]]
-	[[Category: Transcription regulation]]
-	[[Category: Transcription regulator]]

OCA at 09:00, 25 May 2022

OCA — Wed, 25 May 2022 09:00:47 GMT

←Older revision		Revision as of 09:00, 25 May 2022
Line 1:		Line 1:

	==Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution==		==Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution==
-	<StructureSection load='3pxp' size='340' side='right' caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='3pxp' size='340' side='right'caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Chlaa Chlaa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3PXP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlaa Chlaa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PXP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=324602 CHLAA])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=324602 CHLAA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [~~http~~://pdbe.org/3pxp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3pxp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3pxp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [https://pdbe.org/3pxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [https://www.ebi.ac.uk/pdbsum/3pxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pxp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Chlaa]]		[[Category: Chlaa]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Basic helix-loop-helix motif]]		[[Category: Basic helix-loop-helix motif]]

OCA at 11:54, 5 August 2016

OCA — Fri, 05 Aug 2016 11:54:29 GMT

←Older revision		Revision as of 11:54, 5 August 2016
Line 1:		Line 1:
		+
	==Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution==		==Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution==
	<StructureSection load='3pxp' size='340' side='right' caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='3pxp' size='340' side='right' caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chloroflexus_aurantiacus Chloroflexus aurantiacus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PXP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlaa Chlaa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PXP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1108 Chloroflexus aurantiacus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=324602 CHLAA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [http://www.ebi.ac.uk/pdbsum/3pxp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [http://pdbe.org/3pxp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [http://www.ebi.ac.uk/pdbsum/3pxp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3pxp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3pxp" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chloroflexus aurantiacus~~]]	+	[[Category: Chlaa]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Basic helix-loop-helix motif]]		[[Category: Basic helix-loop-helix motif]]

OCA at 22:38, 3 January 2015

OCA — Sat, 03 Jan 2015 22:38:35 GMT

←Older revision		Revision as of 22:38, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PXP FirstGlance]. <br>		<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PXP FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1108 Chloroflexus aurantiacus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1108 Chloroflexus aurantiacus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [http://www.ebi.ac.uk/pdbsum/3pxp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [http://www.ebi.ac.uk/pdbsum/3pxp PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Chloroflexus aurantiacus]]		[[Category: Chloroflexus aurantiacus]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Basic helix-loop-helix motif]]		[[Category: Basic helix-loop-helix motif]]
	[[Category: Bhlh motif]]		[[Category: Bhlh motif]]
	[[Category: Dna-binding]]		[[Category: Dna-binding]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Lambda repressor-like dna-binding fold]]		[[Category: Lambda repressor-like dna-binding fold]]
	[[Category: Pas domain]]		[[Category: Pas domain]]
	[[Category: Per arnt sim domain]]		[[Category: Per arnt sim domain]]
	[[Category: Profilin-like fold]]		[[Category: Profilin-like fold]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
	[[Category: Psi-biology]]		[[Category: Psi-biology]]
-	[[Category: Structural genomic]]
	[[Category: Transcription]]		[[Category: Transcription]]
	[[Category: Transcription regulation]]		[[Category: Transcription regulation]]
	[[Category: Transcription regulator]]		[[Category: Transcription regulator]]

OCA at 06:49, 9 June 2014

OCA — Mon, 09 Jun 2014 06:49:08 GMT

←Older revision		Revision as of 06:49, 9 June 2014
Line 1:		Line 1:
-	[[~~Image:~~3pxp.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution==
		+	<StructureSection load='3pxp' size='340' side='right' caption='[[3pxp]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PXP FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MYR:MYRISTIC+ACID'>MYR</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Caur_2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1108 Chloroflexus aurantiacus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pxp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pxp RCSB], [http://www.ebi.ac.uk/pdbsum/3pxp PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Actinomycetes are important bacterial sources of antibiotics and other secondary metabolites. Many antibiotic gene clusters are controlled by pathway-specific activators that act in response to growth conditions. Here we present the crystal structure of an MmyB-like transcription regulator MltR (PDB code 3pxp) (Caur_2278) from Chloroflexus aurantiacus, in complex with a fatty acid (myristic acid). MltR is a distant homolog of the methylenomycin activator MmyB and consists of an Xre-type N-terminal DNA-binding domain and a C-terminal ligand-binding module that is related to the Per-Arnt-Sim (PAS) domain. This structure has enabled identification of a new family of bacterial transcription factors that are distributed predominantly in actinomycetes. Bioinformatics analysis of MltR and other characterized family members suggest that they are likely associated with antibiotic and fatty acid metabolism in actinomycetes. Streptomyces coelicolor SCO4944 is a candidate as an ancestral member of the family. Its ortholog in S. griseus, SGR_6891, is induced by A-factor, a gamma-butyrolactone that controls antibiotic production and development, and is adjacent to the A-factor synthase gen, afsA. The location of mltR/mmyB homologs, in particular those adjacent to less well-studied antibiotic-related genes, makes them interesting genetic markers for identifying new antibiotic genes. A model for signal-triggered DNA-binding by MltR is proposed.

-	~~{{STRUCTURE_3pxp\| PDB=3pxp \| SCENE= }}~~	+	Structure of an MmyB-Like Regulator from C. aurantiacus, Member of a New Transcription Factor Family Linked to Antibiotic Metabolism in Actinomycetes.,Xu Q, van Wezel GP, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon AM, Wilson IA PLoS One. 2012;7(7):e41359. Epub 2012 Jul 26. PMID:22844465<ref>PMID:22844465</ref>

-	~~===Crystal structure~~ of ~~a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2~~.~~30 A resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_22844465}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[3pxp]] is a 3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022844465<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Chloroflexus aurantiacus]]		[[Category: Chloroflexus aurantiacus]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA at 04:51, 15 August 2012

OCA — Wed, 15 Aug 2012 04:51:13 GMT

←Older revision		Revision as of 04:51, 15 August 2012
Line 1:		Line 1:
	[[Image:3pxp.png\|left\|200px]]		[[Image:3pxp.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_3pxp", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_3pxp\| PDB=3pxp \| SCENE= }}		{{STRUCTURE_3pxp\| PDB=3pxp \| SCENE= }}

	===Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution===		===Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution===

		+	{{ABSTRACT_PUBMED_22844465}}

	==About this Structure==		==About this Structure==
	[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA].		[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022844465</ref><references group="xtra"/>
	[[Category: Chloroflexus aurantiacus]]		[[Category: Chloroflexus aurantiacus]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA at 05:34, 20 July 2011

OCA — Wed, 20 Jul 2011 05:34:57 GMT

←Older revision		Revision as of 05:34, 20 July 2011
Line 1:		Line 1:
-	[[Image:3pxp.~~jpg~~\|left\|200px]]	+	[[Image:3pxp.png\|left\|200px]]

	<!--		<!--
Line 16:		Line 16:
	[[Category: Chloroflexus aurantiacus]]		[[Category: Chloroflexus aurantiacus]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Basic helix-loop-helix motif]]
		+	[[Category: Bhlh motif]]
		+	[[Category: Dna-binding]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Lambda repressor-like dna-binding fold]]
		+	[[Category: Pas domain]]
		+	[[Category: Per arnt sim domain]]
		+	[[Category: Profilin-like fold]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription regulation]]
		+	[[Category: Transcription regulator]]

OCA: Protected "3pxp" [edit=sysop:move=sysop]

OCA — Wed, 19 Jan 2011 06:29:22 GMT

Protected "3pxp" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:29, 19 January 2011

OCA at 06:29, 19 January 2011

OCA — Wed, 19 Jan 2011 06:29:20 GMT

←Older revision		Revision as of 06:29, 19 January 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3pxp.jpg\|left\|200px]]

-	The ~~entry 3pxp~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_3pxp", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_3pxp\| PDB=3pxp \| SCENE= }}

-	~~Authors: Joint Center for Structural Genomics~~ (~~JCSG~~)	+	===Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution===

-	Description: Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution

-	~~''Page seeded by~~ [http://oca.weizmann.ac.il/oca OCA ] ~~on Wed Dec 22 09~~:37:~~58 2010''~~	+	==About this Structure==
		+	[[3pxp]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Chloroflexus_aurantiacus Chloroflexus aurantiacus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PXP OCA].
		+	[[Category: Chloroflexus aurantiacus]]
		+	[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: New page: '''Unreleased structure''' The entry 3pxp is ON HOLD Authors: Joint Center for Structural Genomics (JCSG) Description: Crystal structure of a PAS and DNA binding domain containing prot...

OCA — Wed, 22 Dec 2010 06:25:22 GMT

New page: '''Unreleased structure''' The entry 3pxp is ON HOLD Authors: Joint Center for Structural Genomics (JCSG) Description: Crystal structure of a PAS and DNA binding domain containing prot...

New page

'''Unreleased structure'''

The entry 3pxp is ON HOLD

Authors: Joint Center for Structural Genomics (JCSG)

Description: Crystal structure of a PAS and DNA binding domain containing protein (Caur_2278) from CHLOROFLEXUS AURANTIACUS J-10-FL at 2.30 A resolution

''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 22 09:37:58 2010''