3qav - Revision history

OCA at 08:34, 20 March 2024

OCA — Wed, 20 Mar 2024 08:34:52 GMT

←Older revision		Revision as of 08:34, 20 March 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QAV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QAV FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~3qaw~~\|~~3qaw~~]]~~</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1~~.18 2.5.1.18] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [https://pdbe.org/3qav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [https://www.ebi.ac.uk/pdbsum/3qav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qav ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [https://pdbe.org/3qav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [https://www.ebi.ac.uk/pdbsum/3qav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qav ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/B9VX79_LATEL B9VX79_LATEL]
-	Glutathione-S-transferases have been identified in all the living species examined so far, yet little is known about their function in marine organisms. In a previous report, the recently identified GST from Antarctic bivalve Laternula elliptica (LeGST) was classified into the rho class GST, but there are several unique features of LeGST that may justify reclassification, which could represent specific shellfish GSTs. Here, we determined the crystal structure of LeGST, which is a shellfish specific class of GST. The structural analysis showed that the relatively open and wide hydrophobic H-site of the LeGST allows this GST to accommodate various substrates. These results suggest that the H-site of LeGST may be the result of adaptation to their environments as sedentary organisms. Proteins 2013. (c) 2012 Wiley Periodicals, Inc.	+
-		+
-	The structure of a shellfish specific GST class glutathione S-transferase from antarctic bivalve Laternula elliptica reveals novel active site architecture.,Park AK, Moon JH, Jang EH, Park H, Ahn IY, Lee KS, Chi YM Proteins. 2013 Mar;81(3):~~531-7. doi: 10.1002~~/~~prot.24208. Epub 2012 Dec 24. PMID:23152139<ref>PMID:23152139<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 3qav" style="background-color:#fffaf0;"><~~/~~div>~~	+

	==See Also==		==See Also==
	*[[Glutathione S-transferase 3D structures\|Glutathione S-transferase 3D structures]]		*[[Glutathione S-transferase 3D structures\|Glutathione S-transferase 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Glutathione transferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Laternula elliptica]]		[[Category: Laternula elliptica]]
-	[[Category: Chi~~, Y M~~]]	+	[[Category: Chi YM]]
-	[[Category: Moon~~, J H~~]]	+	[[Category: Moon JH]]
-	[[Category: Park~~, A K]]~~	+	[[Category: Park AK]]
-	~~[[Category: Cytosol]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 06:00, 8 June 2022

OCA — Wed, 08 Jun 2022 06:00:13 GMT

←Older revision		Revision as of 06:00, 8 June 2022
Line 3:		Line 3:
	<StructureSection load='3qav' size='340' side='right'caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3qav' size='340' side='right'caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3QAV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QAV FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qaw\|3qaw]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3qaw\|3qaw]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [~~http~~://pdbe.org/3qav PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/3qav PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=3qav ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [https://pdbe.org/3qav PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [https://www.ebi.ac.uk/pdbsum/3qav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qav ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:02, 14 August 2019

OCA — Wed, 14 Aug 2019 18:02:39 GMT

←Older revision		Revision as of 18:02, 14 August 2019
Line 1:		Line 1:

	==Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica==		==Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica==
-	<StructureSection load='3qav' size='340' side='right' caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='3qav' size='340' side='right'caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QAV FirstGlance]. <br>		<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QAV FirstGlance]. <br>
Line 17:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 3qav" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3qav" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glutathione S-transferase 3D structures\|Glutathione S-transferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 22:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Glutathione transferase]]		[[Category: Glutathione transferase]]
		+	[[Category: Large Structures]]
	[[Category: Laternula elliptica]]		[[Category: Laternula elliptica]]
	[[Category: Chi, Y M]]		[[Category: Chi, Y M]]

OCA at 09:12, 8 November 2017

OCA — Wed, 08 Nov 2017 09:12:54 GMT

←Older revision		Revision as of 09:12, 8 November 2017
Line 17:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 3qav" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 3qav" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Glutathione S-transferase\|Glutathione S-transferase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:17, 10 December 2016

OCA — Sat, 10 Dec 2016 11:17:01 GMT

←Older revision		Revision as of 11:17, 10 December 2016
Line 1:		Line 1:
		+
	==Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica==		==Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica==
	<StructureSection load='3qav' size='340' side='right' caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='3qav' size='340' side='right' caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qaw\|3qaw]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qaw\|3qaw]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [http://www.ebi.ac.uk/pdbsum/3qav PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [http://pdbe.org/3qav PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [http://www.ebi.ac.uk/pdbsum/3qav PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qav ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 3qav" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 11:37, 9 December 2014

OCA — Tue, 09 Dec 2014 11:37:30 GMT

←Older revision		Revision as of 11:37, 9 December 2014
Line 1:		Line 1:
-	[[~~Image:~~3qav.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica==
		+	<StructureSection load='3qav' size='340' side='right' caption='[[3qav]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[3qav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QAV FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3qaw\|3qaw]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qav FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qav OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qav RCSB], [http://www.ebi.ac.uk/pdbsum/3qav PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Glutathione-S-transferases have been identified in all the living species examined so far, yet little is known about their function in marine organisms. In a previous report, the recently identified GST from Antarctic bivalve Laternula elliptica (LeGST) was classified into the rho class GST, but there are several unique features of LeGST that may justify reclassification, which could represent specific shellfish GSTs. Here, we determined the crystal structure of LeGST, which is a shellfish specific class of GST. The structural analysis showed that the relatively open and wide hydrophobic H-site of the LeGST allows this GST to accommodate various substrates. These results suggest that the H-site of LeGST may be the result of adaptation to their environments as sedentary organisms. Proteins 2013. (c) 2012 Wiley Periodicals, Inc.

-	~~{{STRUCTURE_3qav\| PDB=3qav \| SCENE= }}~~	+	The structure of a shellfish specific GST class glutathione S-transferase from antarctic bivalve Laternula elliptica reveals novel active site architecture.,Park AK, Moon JH, Jang EH, Park H, Ahn IY, Lee KS, Chi YM Proteins. 2013 Mar;81(3):531-7. doi: 10.1002/prot.24208. Epub 2012 Dec 24. PMID:23152139<ref>PMID:23152139</ref>

-	~~===Crystal structure~~ of ~~a glutathione~~ S~~-transferase from Antarctic clam Laternula elliptica===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_23152139}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[3qav]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA].~~	+

	==See Also==		==See Also==
	*[[Glutathione S-transferase\|Glutathione S-transferase]]		*[[Glutathione S-transferase\|Glutathione S-transferase]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Glutathione transferase]]		[[Category: Glutathione transferase]]
	[[Category: Laternula elliptica]]		[[Category: Laternula elliptica]]
-	[[Category: Chi, Y M.]]	+	[[Category: Chi, Y M]]
-	[[Category: Moon, J H.]]	+	[[Category: Moon, J H]]
-	[[Category: Park, A K.]]	+	[[Category: Park, A K]]
	[[Category: Cytosol]]		[[Category: Cytosol]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 09:21, 13 February 2013

OCA — Wed, 13 Feb 2013 09:21:54 GMT

←Older revision		Revision as of 09:21, 13 February 2013
Line 5:		Line 5:
	===Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica===		===Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica===

		+	{{ABSTRACT_PUBMED_23152139}}

	==About this Structure==		==About this Structure==
	[[3qav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA].		[[3qav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA].
		+
		+	==See Also==
		+	*[[Glutathione S-transferase\|Glutathione S-transferase]]
	[[Category: Glutathione transferase]]		[[Category: Glutathione transferase]]
	[[Category: Laternula elliptica]]		[[Category: Laternula elliptica]]

OCA at 10:14, 8 August 2012

OCA — Wed, 08 Aug 2012 10:14:42 GMT

←Older revision		Revision as of 10:14, 8 August 2012
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:3qav.png\|left\|200px]]

-	~~The entry~~ 3qav ~~is ON HOLD~~ ~~until Paper Publication~~	+	{{STRUCTURE_3qav\| PDB=3qav \| SCENE= }}

-	~~Authors: Park, A.K., Moon, J.H., Chi, Y.M.~~	+	===Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica===

-	~~Description: Crystal structure of~~ a ~~glutathione S~~-transferase ~~from Antarctic clam~~ Laternula elliptica	+
		+	==About this Structure==
		+	[[3qav]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Laternula_elliptica Laternula elliptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAV OCA].
		+	[[Category: Glutathione transferase]]
		+	[[Category: Laternula elliptica]]
		+	[[Category: Chi, Y M.]]
		+	[[Category: Moon, J H.]]
		+	[[Category: Park, A K.]]
		+	[[Category: Cytosol]]
		+	[[Category: Transferase]]

OCA at 05:19, 16 February 2011

OCA — Wed, 16 Feb 2011 05:19:54 GMT

←Older revision		Revision as of 05:19, 16 February 2011
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 3qav is ON HOLD	+	The entry 3qav is ON HOLD until Paper Publication

	Authors: Park, A.K., Moon, J.H., Chi, Y.M.		Authors: Park, A.K., Moon, J.H., Chi, Y.M.

	Description: Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica		Description: Crystal structure of a glutathione S-transferase from Antarctic clam Laternula elliptica

OCA: Protected "3qav" [edit=sysop:move=sysop]

OCA — Wed, 19 Jan 2011 05:52:48 GMT

Protected "3qav" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:52, 19 January 2011